<tool id="script_2_GC_correct_bdp-qad" name="GC Corrected Chromosome Counter" version="0.1.0">
	<description>for counting chromosomes</description>
	<command interpreter="perl">script_2_GC_correct_bdp-qad.pl $input $output $input2 </command>
	<inputs>
	<param format="sam" name="input" type="data" label="Source file"/>
        <param format="txt" name="input2" type="data" label="Source file"/>
	 </inputs>
	<outputs>
	<data format="tabular" name="output" />
	 </outputs>
	
	<tests>
	<test>
	<param name= "input" value="1.sam"/>
	<output name= "output" file="output"/>
	</test>
	</tests>
	

	<help>
	This tool aligns reads against Chromosomes
	</help>

</tool>