Mercurial > repos > rachel-929292 > extract_fragment_counts_for_chromosomes

changeset 1:e1803849ab52 draft

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Uploaded
author rachel-929292
date Tue, 18 Oct 2016 09:18:48 -0400
parents b255b5ea9708
children 910e6aeab6af
files script_2_GC_correct_bdp-qad.xml
diffstat 1 files changed, 26 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/script_2_GC_correct_bdp-qad.xml	Tue Oct 18 09:18:48 2016 -0400
@@ -0,0 +1,26 @@
+
+<tool id="script_2_GC_correct_bdp-qad" name="GC Corrected Chromosome Counter" version="0.1.0">
+	<description>for counting chromosomes</description>
+	<command interpreter="perl">script_2_GC_correct_bdp-qad.pl $input $output $input2 </command>
+	<inputs>
+	<param format="sam" name="input" type="data" label="Source file"/>
+        <param format="txt" name="input2" type="data" label="Source file"/>
+	 </inputs>
+	<outputs>
+	<data format="tabular" name="output" />
+	 </outputs>
+	
+	<tests>
+	<test>
+	<param name= "input" value="1.sam"/>
+	<output name= "output" file="output"/>
+	</test>
+	</tests>
+	
+
+	<help>
+	This tool aligns reads against Chromosomes
+	</help>
+
+</tool>
+