Mercurial > repos > recetox > matchms_filtering

changeset 3:1f2b13dbc0c8 draft

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/matchms commit f7bab98744e338dcdbdc9cf6f9de287632c76ea2
author recetox
date Tue, 18 Oct 2022 13:22:20 +0000
parents f814052fbdc5
children 357df6c47d92
files macros.xml matchms_filtering.xml
diffstat 2 files changed, 26 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Tue Oct 18 11:01:27 2022 +0000
+++ b/macros.xml	Tue Oct 18 13:22:20 2022 +0000
@@ -3,6 +3,7 @@
 
     <xml name="creator">
         <creator>
+            <yield/>
             <person
                 givenName="Helge"
                 familyName="Hecht"
@@ -44,7 +45,23 @@
                 The output is a JSON file containing serialized matchMS Scores object. The file can be processed by **matchMS output formatter**. 
         ]]>
     </token>
+    
+    <token name="@HELP_matchms_networking@">
+        <![CDATA[
+        Documentation
+        For documentation on the tool see https://github.com/matchms/matchms/blob/master/README.rst
+        and https://matchms.readthedocs.io/en/latest/.
+        
+        **Upstream Tools**
 
+        matchMS similarity
+        
+        **Downstream Tools**
+        
+        The output is a network-graph file that can be visualized using graph visualization software (e.g., Cytoscape).
+        ]]>
+    </token>
+    
     <token name="@HELP_formatter@">
         <![CDATA[
             Usage
@@ -66,4 +83,12 @@
                 +----------+-----------+---------+--------+
         ]]>
     </token>
+    
+        <xml name="citations">
+            <citations>
+                <citation type="doi">10.5281/zenodo.7178586</citation>
+                <citation type="doi">10.21105/joss.02411</citation>
+            </citations>
+        </xml>
+
 </macros>
--- a/matchms_filtering.xml	Tue Oct 18 11:01:27 2022 +0000
+++ b/matchms_filtering.xml	Tue Oct 18 13:22:20 2022 +0000
@@ -147,8 +147,5 @@
     ]]></help>
 
 
-    <citations>
-        <citation type="doi">10.5281/zenodo.7178586</citation>
-        <citation type="doi">10.21105/joss.02411</citation>
-    </citations>
+    <expand macro="citations"/>
 </tool>