Mercurial > repos > recetox > mfassignr_snplot
annotate mfassignr_snplot.xml @ 2:434fa3233e96 draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit c6e502d8af84750003e4ba001c61817acedd1896
| author | recetox |
|---|---|
| date | Fri, 13 Sep 2024 10:08:39 +0000 |
| parents | 7579b0cda787 |
| children | 5f4b3130272e |
| rev | line source |
|---|---|
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434fa3233e96
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit c6e502d8af84750003e4ba001c61817acedd1896
recetox
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1 <tool id="mfassignr_snplot" name="MFAssignR SNplot" version="@TOOL_VERSION@+galaxy0" profile="23.0"> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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2 <description>Noise level assessment using the SNplot function.</description> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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3 <macros> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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4 <import>macros.xml</import> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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5 <import>help.xml</import> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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6 </macros> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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7 <edam_topics> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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8 <edam_topic>topic_3172</edam_topic> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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9 </edam_topics> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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10 <expand macro="creator"/> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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11 <expand macro="requirements" /> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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12 <command detect_errors="exit_code"><![CDATA[ |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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13 Rscript '${run_script}' |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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14 ]]></command> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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15 <configfiles> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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16 <configfile name="run_script"><![CDATA[ |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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17 SNplot <- MFAssignR::SNplot( |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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18 df = read.delim("$input_file", sep="\t"), |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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19 cut = $cut, |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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20 mass = $mass, |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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21 window.x = $window_x, |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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22 window.y = $window_y |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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23 ) |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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24 |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
parents:
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25 ggplot2::ggsave(filename = "SNplot.png", SNplot) |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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changeset
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26 ]]></configfile> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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changeset
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27 </configfiles> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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changeset
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28 <inputs> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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29 <expand macro="snplot_param"/> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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changeset
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30 </inputs> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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31 <outputs> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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32 <data name="SNplot" format="png" label="SNplot by ${tool.name} on ${on_string}" from_work_dir="SNplot.png"/> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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33 </outputs> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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34 <tests> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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35 <test> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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36 <param name="input_file" value="QC1_1_POS_500.tabular"/> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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37 <param name="cut" value="3294705.63963789"/> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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38 <param name="mass" value="300"/> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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39 <output name="SNplot" ftype="png" file="snplot/plot.png" /> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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40 </test> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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41 </tests> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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42 <help><![CDATA[ |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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43 @SNPLOT_HELP@ |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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44 |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
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45 @GENERAL_HELP@ |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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46 ]]></help> |
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6a34bc7afd61
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 87bb82e07c57753a71d9ce4efc757c4367200d15
recetox
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47 <expand macro="citations" /> |
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7579b0cda787
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/mfassignr commit 37faca3342cbcd3bd6b23fe52a00d05151c03bfd
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48 </tool> |