Mercurial > repos > recetox > qcxms_neutral_run

view msp_out.sh @ 6:475bbef634d4 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/qcxms commit 384b9f232ce56d35cc16cbf0e499c5e1be683933
author recetox
date Tue, 15 Apr 2025 12:33:15 +0000
parents 0d9d72ef658f
children
line wrap: on
line source

#!/bin/sh

molname=`sed -n '1{p;q}'  molname.txt`
kword=$(grep 'NPOINTS' result.jdx)
num_peaks=$(echo "$kword" | sed 's/^[^=]*=//')
echo `pwd`
sed -n '/PEAK/,/END/{/PEAK/!{/END/!p}}' result.jdx > temp.dat
awk '{print $1, $2}' temp.dat > tempa.dat
sed "1s/^/NAME: $molname\nNum Peaks: $num_peaks\n/" tempa.dat >> simulated_spectra.msp
sed -i '$a\ ' simulated_spectra.msp
rm temp.dat tempa.dat