Mercurial > repos > recetox > recetox_aplcms_compute_clusters

changeset 4:15aae2bfa67d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 775afc79d12e680bb26496a2626d1855db9cddc7
author recetox
date Thu, 25 May 2023 12:08:49 +0000
parents a054eae3123c
children 60a09c4fa7a0
files recetox_aplcms_compute_clusters.xml utils.R
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/recetox_aplcms_compute_clusters.xml	Thu May 25 09:14:38 2023 +0000
+++ b/recetox_aplcms_compute_clusters.xml	Thu May 25 12:08:49 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="recetox_aplcms_compute_clusters" name="recetox-aplcms - compute clusters" version="@TOOL_VERSION@+galaxy0">
+<tool id="recetox_aplcms_compute_clusters" name="recetox-aplcms - compute clusters" version="@TOOL_VERSION@+galaxy1">
     <description>compute clusters of mz and rt across samples and assign cluster IDs to individual features</description>
     <macros>
         <import>macros.xml</import>
--- a/utils.R	Thu May 25 09:14:38 2023 +0000
+++ b/utils.R	Thu May 25 12:08:49 2023 +0000
@@ -41,9 +41,9 @@
 
 save_parquet_collection <- function(feature_tables, sample_names, subdir) {
     dir.create(subdir)
-    for (i in seq_len(length(table$feature_tables))) {
+    for (i in seq_len(length(feature_tables))) {
       filename <- file.path(subdir, paste0(sample_names[i], ".parquet"))
-      feature_table <- as.data.frame(table$feature_tables[[i]])
+      feature_table <- as.data.frame(feature_tables[[i]])
       feature_table <- save_sample_name(feature_table, sample_names[i])
       arrow::write_parquet(feature_table, filename)
     }