Mercurial > repos > recetox > waveica
comparison macros.xml @ 9:6fc9f6dbcef5 draft
planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit bbcbf9c32acaedffb78f0caef47faeed8f68cb52
author | recetox |
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date | Fri, 16 May 2025 10:14:27 +0000 |
parents | 1a2aeb8137bf |
children | 821062fc5782 |
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8:bf32ae95a06f | 9:6fc9f6dbcef5 |
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20 </creator> | 20 </creator> |
21 </xml> | 21 </xml> |
22 | 22 |
23 <xml name="annotation"> | 23 <xml name="annotation"> |
24 <xrefs> | 24 <xrefs> |
25 <xref type="bio.tools">waveica</xref> | 25 <xref type="bio.tools">waveica</xref> |
26 </xrefs> | 26 </xrefs> |
27 </xml> | 27 </xml> |
28 | 28 |
29 <xml name="input_data"> | 29 <xml name="input_data"> |
30 <param type="data" name="data" label="Feature table" format="csv,tsv,parquet" help=""/> | 30 <param type="data" name="data" label="Feature table" format="csv,tsv,tabular,parquet" help=""/> |
31 </xml> | 31 </xml> |
32 <xml name="general_parameters"> | 32 |
33 <param type="integer" value="20" name="k" label="Number of components to decompose" help="maximal component that ICA decomposes"/> | |
34 <param type="float" value="0" name="alpha" label="Alpha" help="trade-off value between the independence of samples (temporal ICA) and variables (spatial ICA), should be between 0 and 1"/> | |
35 </xml> | |
36 <xml name="batchwise_parameters"> | |
37 <param type="float" value="0.05" name="t" label="Batch-association threshold" help="threshold to consider a component associate with the batch, | |
38 should be between 0 and 1"/> | |
39 <param type="float" value="0.05" name="t2" label="Group-association threshold" help="threshold to consider a component associate with the group, | |
40 should be between 0 and 1"/> | |
41 </xml> | |
42 <xml name="singlebatch_parameters"> | |
43 <param type="float" value="0" name="cutoff" label="Cutoff" help="threshold of the variation explained by the injection order for independent components, should be between 0 and 1"/> | |
44 </xml> | |
45 <xml name="exclude_blanks"> | |
46 <param name="exclude_blanks" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="Remove blanks" help="Excludes blank samples from the output" /> | |
47 </xml> | |
48 <xml name="wf"> | 33 <xml name="wf"> |
49 <conditional name="wf"> | 34 <conditional name="wf"> |
50 <param type="select" name="wavelet_filter" label="Wavelet transform filter" help="wavelet function and filter length [1] (see footnotes for more details)"> | 35 <param type="select" name="wavelet_filter" label="Wavelet transform filter" help="wavelet function and filter length [1] (see footnotes for more details)"> |
51 <option value="d" selected="True">Daubechies</option> | 36 <option value="d" selected="True">Daubechies</option> |
52 <option value="la" >Least Asymetric</option> | 37 <option value="la" >Least Asymetric</option> |