comparison macros.xml @ 9:6fc9f6dbcef5 draft

planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/waveica commit bbcbf9c32acaedffb78f0caef47faeed8f68cb52
author recetox
date Fri, 16 May 2025 10:14:27 +0000
parents 1a2aeb8137bf
children 821062fc5782
comparison
equal deleted inserted replaced
8:bf32ae95a06f 9:6fc9f6dbcef5
20 </creator> 20 </creator>
21 </xml> 21 </xml>
22 22
23 <xml name="annotation"> 23 <xml name="annotation">
24 <xrefs> 24 <xrefs>
25 <xref type="bio.tools">waveica</xref> 25 <xref type="bio.tools">waveica</xref>
26 </xrefs> 26 </xrefs>
27 </xml> 27 </xml>
28 28
29 <xml name="input_data"> 29 <xml name="input_data">
30 <param type="data" name="data" label="Feature table" format="csv,tsv,parquet" help=""/> 30 <param type="data" name="data" label="Feature table" format="csv,tsv,tabular,parquet" help=""/>
31 </xml> 31 </xml>
32 <xml name="general_parameters"> 32
33 <param type="integer" value="20" name="k" label="Number of components to decompose" help="maximal component that ICA decomposes"/>
34 <param type="float" value="0" name="alpha" label="Alpha" help="trade-off value between the independence of samples (temporal ICA) and variables (spatial ICA), should be between 0 and 1"/>
35 </xml>
36 <xml name="batchwise_parameters">
37 <param type="float" value="0.05" name="t" label="Batch-association threshold" help="threshold to consider a component associate with the batch,
38 should be between 0 and 1"/>
39 <param type="float" value="0.05" name="t2" label="Group-association threshold" help="threshold to consider a component associate with the group,
40 should be between 0 and 1"/>
41 </xml>
42 <xml name="singlebatch_parameters">
43 <param type="float" value="0" name="cutoff" label="Cutoff" help="threshold of the variation explained by the injection order for independent components, should be between 0 and 1"/>
44 </xml>
45 <xml name="exclude_blanks">
46 <param name="exclude_blanks" type="boolean" checked="false" truevalue="TRUE" falsevalue="FALSE" label="Remove blanks" help="Excludes blank samples from the output" />
47 </xml>
48 <xml name="wf"> 33 <xml name="wf">
49 <conditional name="wf"> 34 <conditional name="wf">
50 <param type="select" name="wavelet_filter" label="Wavelet transform filter" help="wavelet function and filter length [1] (see footnotes for more details)"> 35 <param type="select" name="wavelet_filter" label="Wavelet transform filter" help="wavelet function and filter length [1] (see footnotes for more details)">
51 <option value="d" selected="True">Daubechies</option> 36 <option value="d" selected="True">Daubechies</option>
52 <option value="la" >Least Asymetric</option> 37 <option value="la" >Least Asymetric</option>