Mercurial > repos > rhpvorderman > data_manager_select_index_by_path
annotate data_manager/indexes.yml @ 0:5f8d9309058b draft
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
author | rhpvorderman |
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date | Mon, 25 Sep 2017 03:35:26 -0400 |
parents | |
children | 8495c49cd056 |
rev | line source |
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0
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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1 all_fasta: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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2 name: fasta file |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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3 extensions: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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4 - .fa |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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5 no_prefix: True |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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6 bowtie2_indexes: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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7 name: bowtie2 index |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
|
8 extensions: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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9 - .bt2 |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
|
10 bowtie_indexes: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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11 name: bowtie index |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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12 extensions: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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13 - .ebwt |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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14 bowtie_indexes_color: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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15 name: bowtie color index |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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16 extensions: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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17 - .ebwt |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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18 bwa_mem_indexes: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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19 name: bwa mem index |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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20 extensions: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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21 - .amb |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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22 - .ann |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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23 - .bwt |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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24 - .pac |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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25 - .sa |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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26 bwameth_indexes: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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27 name: bwa_meth_index |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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28 fasta_indexes: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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29 name: fasta index |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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30 extensions: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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31 - .fai |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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32 gatk_picard_index: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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33 name: picard index for GATK |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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34 gene_transfer: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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35 name: Gene Transfer File |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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36 extensions: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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37 - .gtf |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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38 hisat2_indexes: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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39 name: hisat2 index |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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40 extensions: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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41 - .ht2 |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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42 kallisto_indexes: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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43 name: kallisto index |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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44 no_prefix: True |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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45 picard_indexes: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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46 name: picard index |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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47 tophat2_indexes: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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48 name: tophat2 index |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
changeset
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49 extensions: |
5f8d9309058b
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit b3f86a0c89c2956f40ee0d462cb31a60eb91724a
rhpvorderman
parents:
diff
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50 - .bt2 |