Mercurial > repos > rmarenco > hubarchivecreator

comparison templates/trackDb/layout.txt @ 29:7e8a8b732db3 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
author yating-l
date Wed, 16 May 2018 18:04:20 -0400
parents cdd33c5c8ac1
children
comparison
equal deleted inserted replaced
28:6aa28a85cc38 29:7e8a8b732db3
1 % for trackDb in trackDbs: 1 % for trackDb in trackDbs:
2 % if "bigWig" in trackDb.trackType: 2 ## See this http://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html
3 % for key in trackDb:
4 ${key} ${trackDb.get(key)}
5 % endfor
3 6
4 track ${trackDb.trackName}
5 longLabel ${trackDb.longLabel}
6 shortLabel ${trackDb.shortLabel}
7 bigDataUrl ${trackDb.trackDataURL}
8 visibility ${trackDb.visibility}
9 priority ${trackDb.priority}
10 color ${trackDb.track_color}
11 group ${trackDb.group_name.lower().replace(' ', '_')}
12 type ${trackDb.trackType}
13 autoScale on
14 maxHeightPixels 100:32:8
15 windowingFunction mean+whiskers
16
17 % elif "bigBed 12 +" in trackDb.trackType and trackDb.database:
18
19 track ${trackDb.trackName}
20 longLabel ${trackDb.longLabel}
21 shortLabel ${trackDb.shortLabel}
22 bigDataUrl ${trackDb.trackDataURL}
23 type ${trackDb.trackType}
24 visibility ${trackDb.visibility}
25 thickDrawItem ${trackDb.thickDrawItem}
26 priority ${trackDb.priority}
27 color ${trackDb.track_color}
28 group ${trackDb.group_name.lower().replace(' ', '_')}
29 searchIndex name
30 % if "NCBI" in trackDb.database:
31 url https://www.ncbi.nlm.nih.gov/protein/$$
32 urlLabel ${trackDb.database} Details:
33 iframeUrl https://www.ncbi.nlm.nih.gov/protein/$$
34 iframeOptions height='600' width='800'
35 % elif "UniProt" in trackDb.database:
36 url http://www.uniprot.org/uniprot/$$
37 urlLabel ${trackDb.database} Details:
38 iframeUrl http://www.uniprot.org/uniprot/$$
39 iframeOptions height='600' width='800'
40 % elif "FlyBase" in trackDb.database:
41 url http://flybase.org/reports/$$
42 urlLabel ${trackDb.database} Details:
43 iframeUrl http://flybase.org/reports/$$
44 iframeOptions height='600' width='800'
45 % else:
46 url https://www.ncbi.nlm.nih.gov/gquery/?term=$$
47 urlLabel NCBI Details:
48 iframeUrl https://www.ncbi.nlm.nih.gov/gquery/?term=$$
49 iframeOptions height='600' width='800'
50 % endif
51
52 % elif "bigPsl" in trackDb.trackType and trackDb.database:
53
54 track ${trackDb.trackName}
55 longLabel ${trackDb.longLabel}
56 shortLabel ${trackDb.shortLabel}
57 bigDataUrl ${trackDb.trackDataURL}
58 type ${trackDb.trackType}
59 visibility ${trackDb.visibility}
60 thickDrawItem ${trackDb.thickDrawItem}
61 priority ${trackDb.priority}
62 color ${trackDb.track_color}
63 group ${trackDb.group_name.lower().replace(' ', '_')}
64 searchIndex name
65 % if "NCBI" in trackDb.database:
66 url https://www.ncbi.nlm.nih.gov/nuccore/$$
67 urlLabel NCBI Details:
68 iframeUrl https://www.ncbi.nlm.nih.gov/nuccore/$$
69 iframeOptions height='600' width='800'
70 % else:
71 url https://www.ncbi.nlm.nih.gov/gquery/?term=$$
72 urlLabel NCBI Details:
73 iframeUrl https://www.ncbi.nlm.nih.gov/gquery/?term=$$
74 iframeOptions height='600' width='800'
75 % endif
76
77 % else:
78
79 ## See this http://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html
80 track ${trackDb.trackName}
81 longLabel ${trackDb.longLabel}
82 shortLabel ${trackDb.shortLabel}
83 bigDataUrl ${trackDb.trackDataURL}
84 type ${trackDb.trackType}
85 visibility ${trackDb.visibility}
86 thickDrawItem ${trackDb.thickDrawItem}
87 priority ${trackDb.priority}
88 color ${trackDb.track_color}
89 group ${trackDb.group_name.lower().replace(' ', '_')}
90 searchIndex name
91 % endif
92 % endfor 7 % endfor