Mercurial > repos > rmarenco > hubarchivecreator
diff templates/trackDb/layout.txt @ 29:7e8a8b732db3 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
author | yating-l |
---|---|
date | Wed, 16 May 2018 18:04:20 -0400 |
parents | cdd33c5c8ac1 |
children |
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--- a/templates/trackDb/layout.txt Mon Jul 10 17:08:38 2017 -0400 +++ b/templates/trackDb/layout.txt Wed May 16 18:04:20 2018 -0400 @@ -1,92 +1,7 @@ % for trackDb in trackDbs: - % if "bigWig" in trackDb.trackType: - -track ${trackDb.trackName} -longLabel ${trackDb.longLabel} -shortLabel ${trackDb.shortLabel} -bigDataUrl ${trackDb.trackDataURL} -visibility ${trackDb.visibility} -priority ${trackDb.priority} -color ${trackDb.track_color} -group ${trackDb.group_name.lower().replace(' ', '_')} -type ${trackDb.trackType} -autoScale on -maxHeightPixels 100:32:8 -windowingFunction mean+whiskers - - % elif "bigBed 12 +" in trackDb.trackType and trackDb.database: +## See this http://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html + % for key in trackDb: +${key} ${trackDb.get(key)} + % endfor -track ${trackDb.trackName} -longLabel ${trackDb.longLabel} -shortLabel ${trackDb.shortLabel} -bigDataUrl ${trackDb.trackDataURL} -type ${trackDb.trackType} -visibility ${trackDb.visibility} -thickDrawItem ${trackDb.thickDrawItem} -priority ${trackDb.priority} -color ${trackDb.track_color} -group ${trackDb.group_name.lower().replace(' ', '_')} -searchIndex name - % if "NCBI" in trackDb.database: -url https://www.ncbi.nlm.nih.gov/protein/$$ -urlLabel ${trackDb.database} Details: -iframeUrl https://www.ncbi.nlm.nih.gov/protein/$$ -iframeOptions height='600' width='800' - % elif "UniProt" in trackDb.database: -url http://www.uniprot.org/uniprot/$$ -urlLabel ${trackDb.database} Details: -iframeUrl http://www.uniprot.org/uniprot/$$ -iframeOptions height='600' width='800' - % elif "FlyBase" in trackDb.database: -url http://flybase.org/reports/$$ -urlLabel ${trackDb.database} Details: -iframeUrl http://flybase.org/reports/$$ -iframeOptions height='600' width='800' - % else: -url https://www.ncbi.nlm.nih.gov/gquery/?term=$$ -urlLabel NCBI Details: -iframeUrl https://www.ncbi.nlm.nih.gov/gquery/?term=$$ -iframeOptions height='600' width='800' - % endif - - % elif "bigPsl" in trackDb.trackType and trackDb.database: - -track ${trackDb.trackName} -longLabel ${trackDb.longLabel} -shortLabel ${trackDb.shortLabel} -bigDataUrl ${trackDb.trackDataURL} -type ${trackDb.trackType} -visibility ${trackDb.visibility} -thickDrawItem ${trackDb.thickDrawItem} -priority ${trackDb.priority} -color ${trackDb.track_color} -group ${trackDb.group_name.lower().replace(' ', '_')} -searchIndex name - % if "NCBI" in trackDb.database: -url https://www.ncbi.nlm.nih.gov/nuccore/$$ -urlLabel NCBI Details: -iframeUrl https://www.ncbi.nlm.nih.gov/nuccore/$$ -iframeOptions height='600' width='800' - % else: -url https://www.ncbi.nlm.nih.gov/gquery/?term=$$ -urlLabel NCBI Details: -iframeUrl https://www.ncbi.nlm.nih.gov/gquery/?term=$$ -iframeOptions height='600' width='800' - % endif - - % else: - -## See this http://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html -track ${trackDb.trackName} -longLabel ${trackDb.longLabel} -shortLabel ${trackDb.shortLabel} -bigDataUrl ${trackDb.trackDataURL} -type ${trackDb.trackType} -visibility ${trackDb.visibility} -thickDrawItem ${trackDb.thickDrawItem} -priority ${trackDb.priority} -color ${trackDb.track_color} -group ${trackDb.group_name.lower().replace(' ', '_')} -searchIndex name - % endif % endfor