Mercurial > repos > rmarenco > hubarchivecreator
diff test-data/gtf/__main__.log @ 29:7e8a8b732db3 draft
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 1a81ebd0ddea950b84af3fc830e9267a4814b29f
| author | yating-l |
|---|---|
| date | Wed, 16 May 2018 18:04:20 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gtf/__main__.log Wed May 16 18:04:20 2018 -0400 @@ -0,0 +1,38 @@ +DEBUG:root:#### Welcome in HubArchiveCreator Debug Mode #### + +DEBUG:root:Calling faToTwoBit: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling twoBitInfo: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling sort: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:input_false_path: /home/galaxy/galaxy/database/datasets/000/dataset_158.dat +DEBUG:root:data_value: {u'long_label': u'StringTie transcripts', u'name': u'StringTie_Assembled_Transcripts', u'database': u'', u'track_color': u'#000000', u'group_name': u'Default group', u'order_index': u'10'} +DEBUG:root:Calling gtfToGenePred: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling genePredToBigGenePred: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:Calling sort: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:sorted_bed_file_name: /tmp/tmpO0sxeA.sortedBed.bigGenePred +DEBUG:root:chrom_sizes_file_name: /tmp/tmp9W1pAA.chrom.sizes +DEBUG:root:big_bed_file_name: /home/galaxy/galaxy/database/jobs/000/169/dataset_195_files/myHub/Dbia3/tracks/StringTie_Assembled_Transcripts.bb +DEBUG:root:typeOption: bed12+8 +DEBUG:root:autoSql: /home/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/rmarenco/hubarchivecreator/6aa28a85cc38/hubarchivecreator/bigGenePred.as +DEBUG:root:tab option: True +DEBUG:root:Calling bedToBigBed: +DEBUG:root:--------- +DEBUG:root: +DEBUG:root:----- End of all_datatype_dictionary processing ----- +DEBUG:root:all_datatype_ordered_dictionary keys are: [<Gtf.Gtf object at 0x7f8acc88c650>] +DEBUG:root:----- Beginning of Track adding processing ----- +DEBUG:root:We just added in /home/galaxy/galaxy/database/jobs/000/169/dataset_195_files/myHub/Dbia3/groups.txt the group Default group +DEBUG:root:We just added track gonramp_StringTie_Assembled_Transcripts_bb (in group default_group) +DEBUG:root:----- End of Track adding processing ----- +DEBUG:root:#### End of HubArchiveCreator Debug Mode: Bye! ####