changeset 0:fccb17c9e7ef draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmv commit 3bc676ca60e837f8aca261d0b7860128b3474a5c
author rnateam
date Fri, 20 Oct 2017 04:31:43 -0400
parents
children 8405fa59c2b2
files cmcv.xml macros.xml tRNA.pdf test-data/Hammerhead_1.pdf test-data/Hammerhead_3.pdf test-data/Hammerhead_HH10.pdf test-data/Hammerhead_HH9.cm test-data/Hammerhead_HH9.pdf test-data/Hammerhead_II.pdf test-data/hammerheadClan.cm test-data/hammerheadClan.hmm test-data/input.cmcompare test-data/input.hmmcompare test-data/tRNA.hmm test-data/tRNA.pdf
diffstat 15 files changed, 2789 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cmcv.xml	Fri Oct 20 04:31:43 2017 -0400
@@ -0,0 +1,56 @@
+<tool id="cmcv" name="CMCV" version="@VERSION@.1">
+    <description>visualization of comparisons between RNA family models (CM)</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
+    <expand macro="version" />
+    <command><![CDATA[
+    CMCV
+        @COMMON_ARGS@
+        -m $model_filepath
+        -r $cmcompare_file
+    ]]></command>
+    
+    <inputs>
+        <param name="model_filepath" type="data" format="cm" label="Input model"/>
+        <param name="cmcompare_file" type="data" format="cmcompare" label="Input comparison"/>
+        <section name="common" title="Common parameters">
+            <expand macro="common_parameters" />
+        </section>
+    </inputs>
+    <outputs>
+        <expand macro="vis_output"/>
+    </outputs>
+    <tests>
+      <test>
+        <param name="model_filepath" value="hammerheadClan.cm" />
+	<param name="cmcompare_file" value="input.cmcompare" />
+	<param name="output_format" value="pdf" />
+	<param name="model_details" value="detailed" />
+	<param name="emission_layout" value="bar" />
+	<output_collection name="output_pdfs" type="list">
+          <element name="Hammerhead_II" file="Hammerhead_II.pdf" ftype="pdf" compare="sim_size" delta="50000"/>
+	  <element name="Hammerhead_HH10" file="Hammerhead_HH10.pdf" ftype="pdf" compare="sim_size" delta="50000"/>
+	</output_collection>
+      </test>
+    </tests>
+    <help><![CDATA[
+    **CMCV -- Visualisation of RNA family model comparison**
+
+    **Input.**
+    Covariance Models in INFERNAL format, comparison file in cmcompare format.
+
+    **Output.**
+    Depending on the detail level, only nodes with index (minimal), nodes with node type and indices (simple)
+    or nodes with states, emission and transition probabilities are visualised. Nodes linked by input comparison data
+    between different families are highlighted with color labels. 
+    File in pdf,svg,png,ps format.
+
+    For more information, see     
+    .. __: https://github.com/eggzilla/cmv
+
+    ]]></help>
+    <expand macro="citations" />
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Fri Oct 20 04:31:43 2017 -0400
@@ -0,0 +1,86 @@
+<macros>
+    <token name="@VERSION@">1.0.6</token>
+
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@VERSION@">cmv</requirement>
+        </requirements>
+    </xml>
+
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" />
+        </stdio>
+    </xml>
+
+    <xml name="version">
+        <version_command>
+            <![CDATA[
+                HMMV --version
+            ]]>
+        </version_command>
+    </xml>
+
+    <xml name="common_parameters">
+        <param name="alignment_filepath" type="data" format="stockholm" label="Input stockholm alignment" optional="true"/>
+        <param name="output_format" type="select" label="Output format" help="pdf, svg, png, ps">
+            <option value="pdf">pdf</option>
+            <option value="svg">svg</option>
+            <option value="png">png</option>
+            <option value="ps">ps</option>
+        </param>
+        <param name="model_details" type="select" label="Specify visualization detail level." help="minimal,simple,detailed">
+            <option value="minimal">minimal</option>
+            <option value="simple">simple</option>
+            <option value="detailed">detailed</option>
+        </param>
+        <param name="emission_layout" type="select" label="Specify layout of emission probabilites." help="score,probability,bar">
+            <option value="score">score</option>
+            <option value="probability">probability</option>
+            <option value="bar">bar</option>
+        </param>
+        <param argument="-t" type="float" value="0.01" label="Transition probability threshold" help="Minimal value for a transition probability to be displayed (Default: 0.01)"/>
+        <param argument="-c" type="float" value="2" label="Image scaling factor" help="Set uniform scaling factor for image size (Default: 2)"/>
+        <param argument="-w" type="integer" value="100" label="Maximum image width" help="Set maximal width of result figure (Default: 100)" optional="true"/>
+        <param argument="-n" type="integer" value="50" label="Stockholm alignment entries"  help="Set cutoff for included stockholm alignment entries (Default: 50)" optional="true"/>
+    </xml>
+    
+    <xml name="vis_output">
+        <collection name="output_pdfs" type="list" label="${tool.name} on ${on_string}: output.pdfs">
+            <discover_datasets pattern="(?P&lt;designation&gt;.*)\.pdf" format="pdf"/>
+            <filter>common['output_format'] == 'pdf'</filter>
+        </collection>
+        <collection name="output_svg" type="list" label="${tool.name} on ${on_string}: output.svgs">
+            <discover_datasets pattern="(?P&lt;designation&gt;.*)\.svg" format="svg"/>
+            <filter>common['output_format'] == 'svg'</filter>
+        </collection>
+        <collection name="output_png" type="list" label="${tool.name} on ${on_string}: output.pngs">
+            <discover_datasets pattern="(?P&lt;designation&gt;.*)\.png" format="png"/>
+            <filter>common['output_format'] == 'png'</filter>
+        </collection>
+        <collection name="output_ps" type="list" label="${tool.name} on ${on_string}: output.ps">
+            <discover_datasets pattern="(?P&lt;designation&gt;.*)\.ps" format="ps"/>
+            <filter>common['output_format'] == 'ps'</filter>
+        </collection>
+    </xml>
+    
+    <token name="@COMMON_ARGS@">
+      -d $common.model_details
+      -e $common.emission_layout
+      -n $common.n
+      -w $common.w
+      -c $common.c
+      -t $common.t
+      -f $common.output_format
+      #if $common.alignment_filepath
+         -s $common.alignment_filepath
+      #end if 
+    </token>
+
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1093/nar/gkt329</citation>
+        </citations>
+    </xml>
+</macros>
+
Binary file tRNA.pdf has changed
Binary file test-data/Hammerhead_1.pdf has changed
Binary file test-data/Hammerhead_3.pdf has changed
Binary file test-data/Hammerhead_HH10.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Hammerhead_HH9.cm	Fri Oct 20 04:31:43 2017 -0400
@@ -0,0 +1,598 @@
+INFERNAL1/a [1.1 | October 2013]
+NAME     Hammerhead_HH9
+ACC      RF02275
+STATES   240
+NODES    65
+CLEN     77
+W        103
+ALPH     RNA
+RF       no
+CONS     yes
+MAP      yes
+DATE     Fri Feb 28 01:30:52 2014
+COM      [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED
+COM      [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM
+PBEGIN   0.05
+PEND     0.05
+WBETA    1e-07
+QDBBETA1 1e-07
+QDBBETA2 1e-15
+N2OMEGA  1.52588e-05
+N3OMEGA  1.52588e-05
+ELSELF   -0.08926734
+NSEQ     33
+EFFN     1.567017
+CKSUM    796486396
+NULL     0.000  0.000  0.000  0.000 
+GA       52.00
+TC       52.40
+NC       51.90
+EFP7GF   -8.3103 0.71890
+ECMLC    0.69960    -5.09380     2.60784     1600000      262533  0.004571
+ECMGC    0.43156   -15.39797    -3.48915     1600000       68246  0.005861
+ECMLI    0.73853    -2.62455     4.04692     1600000      165569  0.007248
+ECMGI    0.51255    -9.59123    -0.17571     1600000       49879  0.008019
+CM
+                                             [ ROOT    0 ]      -      - - - - -
+     S     0    -1 0     1     4     0     1   103   135  -6.791  -6.998  -0.308  -2.513                 
+    IL     1     1 2     1     4     4    30   105   138  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR     2     2 3     2     3     3    30   105   137  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL    1 ]      1      - u - - -
+    ML     3     2 3     5     3     3    29   103   136  -7.602  -0.027  -6.257                         -0.234 -0.123 -0.914  0.766 
+     D     4     2 3     5     3     1    26   101   134  -7.290  -2.048  -0.412                         
+    IL     5     5 3     5     3     3    29   104   137  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL    2 ]      2      - u - - -
+    ML     6     5 3     8     3     2    28   102   135  -7.645  -0.026  -6.299                         -0.229 -0.080 -0.850  0.719 
+     D     7     5 3     8     3     1    25   100   133  -7.141  -0.628  -1.532                         
+    IL     8     8 3     8     3     2    28   103   135  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL    3 ]      3      - g - - -
+    ML     9     8 3    11     3     1    27   101   134  -8.220  -0.291  -2.481                          0.177 -0.839  0.571 -0.278 
+     D    10     8 3    11     3     0    24    99   132  -5.620  -0.734  -1.403                         
+    IL    11    11 3    11     3     2    28   101   134  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    4 ]      -     84 - u - -
+    MR    12    11 3    14     3     3    29   100   133  -7.954  -0.025  -6.271                          0.090 -0.349 -0.887  0.687 
+     D    13    11 3    14     3     0    22    97   130  -7.578  -2.756  -0.240                         
+    IR    14    14 3    14     3     2    28   100   133  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    5 ]      -     83 - a - -
+    MR    15    14 3    17     3     2    28    99   132  -7.954  -0.025  -6.271                          0.182 -0.063 -0.261  0.103 
+     D    16    14 3    17     3     0    22    97   130  -7.578  -1.489  -0.647                         
+    IR    17    17 3    17     3     2    27    99   132  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    6 ]      -     82 - a - -
+    MR    18    17 3    20     3     2    28    98   131  -8.058  -0.023  -6.376                          0.400 -0.418 -0.083 -0.018 
+     D    19    17 3    20     3     0    21    95   128  -7.241  -2.419  -0.310                         
+    IR    20    20 3    20     3     2    27    98   131  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    7 ]      -     81 - u - -
+    MR    21    20 3    23     3     2    27    97   130  -8.058  -0.023  -6.376                          0.287 -0.181 -0.578  0.297 
+     D    22    20 3    23     3     0    21    94   127  -7.241  -2.419  -0.310                         
+    IR    23    23 3    23     3     2    26    97   130  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    8 ]      -     80 - a - -
+    MR    24    23 3    26     3     2    27    96   129  -8.058  -0.023  -6.376                          0.651 -0.505 -0.299 -0.132 
+     D    25    23 3    26     3     0    20    93   126  -7.241  -2.419  -0.310                         
+    IR    26    26 3    26     3     1    26    96   129  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    9 ]      -     79 - g - -
+    MR    27    26 3    29     3     2    26    95   128  -8.058  -0.023  -6.376                          0.106 -0.685  0.234  0.170 
+     D    28    26 3    29     3     0    20    93   125  -7.241  -2.419  -0.310                         
+    IR    29    29 3    29     3     1    25    95   128  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   10 ]      -     78 - a - -
+    MR    30    29 3    32     3     2    25    94   127  -8.058  -0.023  -6.376                          0.761 -0.594 -0.542 -0.065 
+     D    31    29 3    32     3     0    20    92   125  -7.241  -2.419  -0.310                         
+    IR    32    32 3    32     3     1    24    94   127  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   11 ]      -     77 - a - -
+    MR    33    32 3    35     3     1    25    93   126  -8.058  -0.023  -6.376                          0.768 -1.014  0.040 -0.369 
+     D    34    32 3    35     3     0    19    92   124  -7.241  -0.661  -1.471                         
+    IR    35    35 3    35     3     1    23    93   126  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   12 ]      -     76 - u - -
+    MR    36    35 3    38     5     1    24    92   125  -6.968  -0.043  -6.783  -6.995  -7.887         -0.230 -0.756 -0.646  0.938 
+     D    37    35 3    38     5     0    17    90   123  -5.352  -0.707  -2.978  -4.409  -2.404         
+    IR    38    38 3    38     5     1    21    92   125  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   13 ]      4     75 g c - -
+    MP    39    38 3    43     6     2    25    91   124  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -2.590 -2.180 -1.964  1.850 -2.759 -3.476  1.187 -2.998 -2.797  2.192 -3.287  0.312  0.916 -2.754 -0.463 -1.764 
+    ML    40    38 3    43     6     1    19    89   122  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    41    38 3    43     6     1    19    89   122  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    42    38 3    43     6     0    15    86   119  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    43    43 5    43     6     1    21    90   123  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    44    44 6    44     5     1    21    90   123  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   14 ]      5     74 G C - -
+    MP    45    44 6    49     6     2    24    89   122  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -4.253 -2.836 -4.324  0.557 -4.803 -4.534 -0.228 -4.617 -4.028  3.497 -4.405 -0.223 -0.550 -4.133 -2.239 -3.215 
+    ML    46    44 6    49     6     1    19    87   120  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    47    44 6    49     6     1    18    87   120  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    48    44 6    49     6     0    15    84   117  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    49    49 5    49     6     1    20    88   121  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    50    50 6    50     5     1    20    88   121  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   15 ]      6     73 C G - -
+    MP    51    50 6    55     6     2    23    87   120  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447  3.451 -3.563 -4.039 -0.114 -4.329 -2.083  0.758 -4.348 -0.484 -2.889 
+    ML    52    50 6    55     6     1    18    85   118  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    53    50 6    55     6     1    18    85   118  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    54    50 6    55     6     0    14    82   115  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    55    55 5    55     6     1    20    86   119  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    56    56 6    56     5     1    20    86   119  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   16 ]      7     72 C G - -
+    MP    57    56 6    61     6     2    21    85   118  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -3.856 -3.773 -2.271 -0.203 -3.042 -4.470  3.435 -3.702 -3.874  0.101 -4.273 -1.830  0.571 -4.056 -0.830 -2.814 
+    ML    58    56 6    61     6     1    18    84   116  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    59    56 6    61     6     1    16    83   116  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    60    56 6    61     6     0    14    81   114  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    61    61 5    61     6     1    19    84   117  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    62    62 6    62     5     1    19    84   117  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   17 ]      8     71 g u - -
+    MP    63    62 6    67     4     2    19    83   116  -4.765  -6.998  -0.102  -5.412                 -2.697 -1.788 -2.960  1.337 -3.159 -3.556  0.836 -3.099 -2.727  1.766 -1.214  2.166  0.520 -3.064 -0.980 -1.882 
+    ML    64    62 6    67     4     1    17    82   115  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR    65    62 6    67     4     1    15    82   114  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D    66    62 6    67     4     0    14    80   113  -4.568  -4.250  -2.265  -0.520                 
+    IL    67    67 5    67     4     1    18    83   116  -1.835  -2.518  -0.960  -5.004                  0.000  0.000  0.000  0.000 
+    IR    68    68 6    68     3     1    18    83   116  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   18 ]     10      - U - - -
+    ML    69    68 6    71     3     1    18    81   114  -7.819  -0.023  -6.474                         -1.223 -1.267 -1.942  1.534 
+     D    70    68 6    71     3     0    13    79   112  -6.174  -1.687  -0.566                         
+    IL    71    71 3    71     3     1    17    82   115  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   19 ]     11      - U - - -
+    ML    72    71 3    74     3     1    17    80   113  -7.819  -0.023  -6.474                         -1.223 -1.267 -1.942  1.534 
+     D    73    71 3    74     3     0    13    78   111  -6.174  -1.687  -0.566                         
+    IL    74    74 3    74     3     1    16    81   114  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   20 ]     12      - A - - -
+    ML    75    74 3    77     3     1    17    79   112  -7.819  -0.023  -6.474                          1.503 -1.738 -1.177 -1.240 
+     D    76    74 3    77     3     0    12    77   110  -6.174  -1.687  -0.566                         
+    IL    77    77 3    77     3     1    16    80   113  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   21 ]     13      - C - - -
+    ML    78    77 3    80     3     1    16    78   111  -8.220  -0.021  -6.537                         -1.396  1.516 -2.205 -0.881 
+     D    79    77 3    80     3     0    11    76   109  -5.620  -0.734  -1.403                         
+    IL    80    80 3    80     3     1    15    78   111  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   22 ]      -     70 - C - -
+    MR    81    80 3    83     3     1    16    77   110  -8.220  -0.021  -6.537                         -0.799  1.038 -1.595  0.058 
+     D    82    80 3    83     3     0    10    75   108  -6.390  -1.568  -0.620                         
+    IR    83    83 3    83     3     1    14    77   110  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   23 ]      -     69 - A - -
+    MR    84    83 3    86     3     1    15    76   109  -8.220  -0.021  -6.537                          1.648 -2.082 -1.743 -1.597 
+     D    85    83 3    86     3     0     9    74   107  -6.390  -1.568  -0.620                         
+    IR    86    86 3    86     3     1    14    76   109  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   24 ]      -     68 - U - -
+    MR    87    86 3    89     5     1    15    75   108  -6.968  -0.043  -6.783  -6.995  -7.887         -1.223 -1.267 -1.942  1.534 
+     D    88    86 3    89     5     0     8    73   106  -5.352  -0.707  -2.978  -4.409  -2.404         
+    IR    89    89 3    89     5     1    12    75   108  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   25 ]     14     67 C G - -
+    MP    90    89 3    94     6     2    16    74   107  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447  3.451 -3.563 -4.039 -0.114 -4.329 -2.083  0.758 -4.348 -0.484 -2.889 
+    ML    91    89 3    94     6     1    10    72   105  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    92    89 3    94     6     1    10    72   105  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    93    89 3    94     6     0     6    69   102  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    94    94 5    94     6     1    11    73   106  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    95    95 6    95     5     1    12    73   106  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   26 ]     15     66 U A - -
+    MP    96    95 6   100     6     2    15    72   105  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -3.898 -3.712 -3.767 -0.030 -2.775 -4.358  1.546 -3.449 -3.776  0.273 -4.163 -1.620  3.167 -4.059 -0.458 -2.627 
+    ML    97    95 6   100     6     1    10    70   103  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    98    95 6   100     6     1    10    70   103  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    99    95 6   100     6     0     6    67   100  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   100   100 5   100     6     1    11    71   104  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   101   101 6   101     5     1    11    71   104  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   27 ]     16     65 G C - -
+    MP   102   101 6   106     6     2    15    70   103  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -3.732 -2.590 -3.763  1.442 -4.162 -4.378  0.313 -4.046 -3.690  3.177 -4.112 -0.237 -0.013 -3.778 -1.669 -2.665 
+    ML   103   101 6   106     6     1     9    68   101  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   104   101 6   106     6     1     9    68   101  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   105   101 6   106     6     0     6    65    98  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   106   106 5   106     6     1    11    69   102  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   107   107 6   107     5     1    11    69   102  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   28 ]     17     64 C G - -
+    MP   108   107 6   112     6     2    14    68   101  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447  3.451 -3.563 -4.039 -0.114 -4.329 -2.083  0.758 -4.348 -0.484 -2.889 
+    ML   109   107 6   112     6     1     9    66    99  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   110   107 6   112     6     1     8    66    99  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   111   107 6   112     6     0     5    63    96  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   112   112 5   112     6     1    10    67   100  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   113   113 6   113     5     1    10    67   100  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   29 ]     18     63 A U - -
+    MP   114   113 6   118     6     2    12    66    99  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -3.561 -2.654 -3.595  3.158 -3.821 -4.865  0.465 -3.651 -3.498  1.328 -4.034 -0.171  0.046 -4.090 -1.478 -2.444 
+    ML   115   113 6   118     6     1     8    65    97  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   116   113 6   118     6     1     7    64    97  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   117   113 6   118     6     0     5    62    95  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   118   118 5   118     6     1     9    65    98  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   119   119 6   119     5     1     9    65    98  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   30 ]     19     62 G C - -
+    MP   120   119 6   124     4     2    10    64    97  -6.791  -6.998  -0.059  -5.412                 -4.462 -2.962 -4.540  0.383 -4.839 -4.581 -0.272 -4.759 -4.139  3.563 -4.497 -0.652 -0.665 -4.283 -2.295 -3.421 
+    ML   121   119 6   124     4     1     8    63    96  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR   122   119 6   124     4     1     6    63    95  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D   123   119 6   124     4     0     5    61    94  -4.568  -4.250  -2.265  -0.520                 
+    IL   124   124 5   124     4     1     9    64    97  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR   125   125 6   125     3     1     9    64    97  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   31 ]     20      - C - - -
+    ML   126   125 6   128     3     1     9    62    95  -7.819  -0.023  -6.474                         -1.396  1.516 -2.205 -0.881 
+     D   127   125 6   128     3     0     4    60    93  -6.174  -1.687  -0.566                         
+    IL   128   128 3   128     3     1     8    63    96  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   32 ]     21      - U - - -
+    ML   129   128 3   131     3     1     8    61    94  -7.819  -0.023  -6.474                         -1.223 -1.267 -1.942  1.534 
+     D   130   128 3   131     3     0     4    59    92  -6.174  -1.687  -0.566                         
+    IL   131   131 3   131     3     1     7    62    95  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   33 ]     22      - G - - -
+    ML   132   131 3   134     3     1     7    60    93  -7.819  -0.023  -6.474                         -1.271 -2.440  1.641 -1.825 
+     D   133   131 3   134     3     0     4    58    91  -6.174  -1.687  -0.566                         
+    IL   134   134 3   134     3     1     7    61    94  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   34 ]     23      - A - - -
+    ML   135   134 3   137     3     1     6    59    92  -7.819  -0.023  -6.474                          1.648 -2.082 -1.743 -1.597 
+     D   136   134 3   137     3     0     3    57    90  -6.174  -1.687  -0.566                         
+    IL   137   137 3   137     3     1     6    60    93  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   35 ]     24      - U - - -
+    ML   138   137 3   140     3     1     5    58    91  -7.819  -0.023  -6.474                         -1.223 -1.267 -1.942  1.534 
+     D   139   137 3   140     3     0     3    56    89  -6.174  -1.687  -0.566                         
+    IL   140   140 3   140     3     1     5    59    92  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   36 ]     25      - G - - -
+    ML   141   140 3   143     3     1     5    57    90  -7.819  -0.023  -6.474                         -1.271 -2.440  1.641 -1.825 
+     D   142   140 3   143     3     0     2    55    88  -6.174  -1.687  -0.566                         
+    IL   143   143 3   143     3     1     5    58    91  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   37 ]     26      - A - - -
+    ML   144   143 3   146     3     1     4    56    89  -8.220  -0.021  -6.537                          1.648 -2.082 -1.743 -1.597 
+     D   145   143 3   146     3     0     2    55    87  -5.620  -0.734  -1.403                         
+    IL   146   146 3   146     3     1     4    56    89  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   38 ]      -     61 - C - -
+    MR   147   146 3   149     2     1     3    55    88  -8.181  -0.005                                 -1.396  1.516 -2.205 -0.881 
+     D   148   146 3   149     2     0     2    54    87  -4.432  -0.068                                 
+    IR   149   149 3   149     2     1     3    55    88  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
+                                             [ BIF    39 ]      -      - - - - -
+     B   150   149 3   151   195     0     2    54    87                                                 
+                                             [ BEGL   40 ]      -      - - - - -
+     S   151   150 1   152     4     0     0    28    47  -0.047  -6.756  -6.164  -6.804                 
+                                             [ MATP   41 ]     27     40 G C - -
+    MP   152   151 1   156     6     2     2    28    47  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -4.462 -2.962 -4.540  0.383 -4.839 -4.581 -0.272 -4.759 -4.139  3.563 -4.497 -0.652 -0.665 -4.283 -2.295 -3.421 
+    ML   153   151 1   156     6     1     1    27    45  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   154   151 1   156     6     1     1    26    45  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   155   151 1   156     6     0     0    24    43  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   156   156 5   156     6     1     1    28    47  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   157   157 6   157     5     1     1    27    46  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   42 ]     28     39 C G - -
+    MP   158   157 6   162     6     2     2    26    45  -9.050  -8.989  -0.028  -6.843  -8.045  -8.440 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447  3.451 -3.563 -4.039 -0.114 -4.329 -2.083  0.758 -4.348 -0.484 -2.889 
+    ML   159   157 6   162     6     1     1    25    44  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   160   157 6   162     6     1     1    25    44  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   161   157 6   162     6     0     0    23    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   162   162 5   162     6     1     1    26    45  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   163   163 6   163     5     1     1    25    44  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   43 ]     29     38 U A - -
+    MP   164   163 6   168     6     2     2    24    43  -9.044  -8.983  -0.022  -7.760  -8.039  -8.434 -3.869 -3.681 -3.741 -0.001 -2.756 -4.334  1.564 -3.428 -3.750  0.307 -4.139 -1.590  3.149 -4.031 -0.440 -2.604 
+    ML   165   163 6   168     6     1     1    23    42  -6.324  -6.670  -1.208  -1.079  -6.520  -4.049  0.267 -0.365 -0.305  0.276 
+    MR   166   163 6   168     6     1     1    23    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   167   163 6   168     6     0     0    22    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   168   168 5   168     6     1     1    24    43  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   169   169 6   169     5     1     1    23    42  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   44 ]     30     37 C G - -
+    MP   170   169 6   174     4     2     2    22    41  -6.791  -6.998  -0.059  -5.412                 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447  3.451 -3.563 -4.039 -0.114 -4.329 -2.083  0.758 -4.348 -0.484 -2.889 
+    ML   171   169 6   174     4     1     1    23    42  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR   172   169 6   174     4     1     1    22    41  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D   173   169 6   174     4     0     0    21    40  -4.568  -4.250  -2.265  -0.520                 
+    IL   174   174 5   174     4     1     1    24    43  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR   175   175 6   175     3     1     1    23    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   45 ]     31      - C - - -
+    ML   176   175 6   178     3     1     1    19    38  -7.819  -0.023  -6.474                         -1.396  1.516 -2.205 -0.881 
+     D   177   175 6   178     3     0     0    18    37  -6.174  -1.687  -0.566                         
+    IL   178   178 3   178     3     1     1    22    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   46 ]     32      - A - - -
+    ML   179   178 3   181     3     1     1    18    36  -7.819  -0.023  -6.474                          1.648 -2.082 -1.743 -1.597 
+     D   180   178 3   181     3     0     0    17    36  -6.174  -1.687  -0.566                         
+    IL   181   181 3   181     3     1     1    21    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   47 ]     33      - A - - -
+    ML   182   181 3   184     3     1     1    16    35  -7.819  -0.023  -6.474                          1.648 -2.082 -1.743 -1.597 
+     D   183   181 3   184     3     0     0    16    34  -6.174  -1.687  -0.566                         
+    IL   184   184 3   184     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   48 ]     34      - a - - -
+    ML   185   184 3   187     3     1     1    15    33  -7.819  -0.023  -6.474                          0.962 -0.927 -0.359 -0.424 
+     D   186   184 3   187     3     0     0    15    33  -6.174  -1.687  -0.566                         
+    IL   187   187 3   187     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   49 ]     35      - A - - -
+    ML   188   187 3   190     3     1     1    13    32  -7.819  -0.023  -6.474                          1.648 -2.082 -1.743 -1.597 
+     D   189   187 3   190     3     0     0    13    32  -6.174  -1.687  -0.566                         
+    IL   190   190 3   190     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   50 ]     36      - A - - -
+    ML   191   190 3   193     2     1     1     1     1       *   0.000                                  1.648 -2.082 -1.743 -1.597 
+     D   192   190 3   193     2     0     0     0     0       *   0.000                                 
+    IL   193   193 3   193     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
+                                             [ END    51 ]      -      - - - - -
+     E   194   193 3    -1     0     0     0     0     0                                                 
+                                             [ BEGR   52 ]      -      - - - - -
+     S   195   150 1   196     3     0     0    40    73  -7.819  -0.023  -6.474                         
+    IL   196   196 2   196     3     1     1    42    75  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   53 ]     41      - G - - -
+    ML   197   196 2   199     3     1     1    40    73  -7.819  -0.023  -6.474                         -1.271 -2.440  1.641 -1.825 
+     D   198   196 2   199     3     0     0    38    71  -6.174  -1.687  -0.566                         
+    IL   199   199 3   199     3     1     1    41    74  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   54 ]     42      - A - - -
+    ML   200   199 3   202     3     1     1    39    72  -7.819  -0.023  -6.474                          1.648 -2.082 -1.743 -1.597 
+     D   201   199 3   202     3     0     0    37    70  -6.174  -1.687  -0.566                         
+    IL   202   202 3   202     3     1     1    40    73  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   55 ]     43      - A - - -
+    ML   203   202 3   205     5     1     1    38    71  -6.968  -0.043  -6.783  -6.995  -7.887          1.648 -2.082 -1.743 -1.597 
+     D   204   202 3   205     5     0     0    36    69  -4.959  -0.803  -4.221  -2.596  -2.508         
+    IL   205   205 3   205     5     1     1    38    71  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   56 ]     44     60 A U - -
+    MP   206   205 3   210     6     2     2    37    70  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -3.561 -2.654 -3.595  3.158 -3.821 -4.865  0.465 -3.651 -3.498  1.328 -4.034 -0.171  0.046 -4.090 -1.478 -2.444 
+    ML   207   205 3   210     6     1     1    35    68  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   208   205 3   210     6     1     1    35    68  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   209   205 3   210     6     0     0    32    65  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   210   210 5   210     6     1     1    36    69  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   211   211 6   211     5     1     1    36    69  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   57 ]     45     59 C G - -
+    MP   212   211 6   216     6     2     2    35    68  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447  3.451 -3.563 -4.039 -0.114 -4.329 -2.083  0.758 -4.348 -0.484 -2.889 
+    ML   213   211 6   216     6     1     1    33    66  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   214   211 6   216     6     1     1    33    66  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   215   211 6   216     6     0     0    30    63  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   216   216 5   216     6     1     1    34    67  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   217   217 6   217     5     1     1    34    67  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   58 ]     46     58 C G - -
+    MP   218   217 6   222     4     2     2    33    66  -3.294  -6.998  -0.206  -5.412                 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447  3.451 -3.563 -4.039 -0.114 -4.329 -2.083  0.758 -4.348 -0.484 -2.889 
+    ML   219   217 6   222     4     1     1    31    64  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR   220   217 6   222     4     1     1    30    63  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D   221   217 6   222     4     0     0    29    62  -4.568  -4.250  -2.265  -0.520                 
+    IL   222   222 5   222     4     1     1    35    68  -0.807  -3.667  -2.415  -2.623                  0.000  0.000  0.000  0.000 
+    IR   223   223 6   223     3     1     1    23    43  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   59 ]     51      - u - - -
+    ML   224   223 6   226     3     1     1    18    38  -7.690  -0.025  -6.344                          0.203 -0.679 -0.354  0.528 
+     D   225   223 6   226     3     0     0    21    42  -1.234  -2.466  -1.344                         
+    IL   226   226 3   226     3     1     1    22    43  -1.311  -0.849  -4.585                          0.000  0.000  0.000  0.000 
+                                             [ MATL   60 ]     54      - a - - -
+    ML   227   226 3   229     3     1     1    16    35  -7.819  -0.023  -6.474                          0.772 -1.070  0.068 -0.383 
+     D   228   226 3   229     3     0     0    16    34  -6.174  -1.687  -0.566                         
+    IL   229   229 3   229     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   61 ]     55      - u - - -
+    ML   230   229 3   232     3     1     1    15    33  -7.819  -0.023  -6.474                          0.149 -0.323 -0.997  0.669 
+     D   231   229 3   232     3     0     0    15    33  -6.174  -1.687  -0.566                         
+    IL   232   232 3   232     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   62 ]     56      - u - - -
+    ML   233   232 3   235     3     1     1    13    32  -7.819  -0.023  -6.474                         -0.263 -0.478 -1.036  0.972 
+     D   234   232 3   235     3     0     0    13    32  -6.174  -1.687  -0.566                         
+    IL   235   235 3   235     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   63 ]     57      - A - - -
+    ML   236   235 3   238     2     1     1     1     1       *   0.000                                  1.475 -1.688 -1.087 -1.185 
+     D   237   235 3   238     2     0     0     0     0       *   0.000                                 
+    IL   238   238 3   238     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
+                                             [ END    64 ]      -      - - - - -
+     E   239   238 3    -1     0     0     0     0     0                                                 
+//
+HMMER3/f [i1.1 | October 2013]
+NAME  Hammerhead_HH9
+ACC   RF02275
+LENG  77
+MAXL  166
+ALPH  RNA
+RF    no
+MM    no
+CONS  yes
+CS    yes
+MAP   yes
+DATE  Fri Feb 28 01:30:53 2014
+COM   [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED
+COM   [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM
+NSEQ  33
+EFFN  2.219604
+CKSUM 796486396
+STATS LOCAL MSV       -8.8496  0.71890
+STATS LOCAL VITERBI   -9.3336  0.71890
+STATS LOCAL FORWARD   -4.0471  0.71890
+HMM          A        C        G        U   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.31725  1.38958  1.36177  1.48394
+          1.38629  1.38629  1.38629  1.38629
+          0.23584  3.90062  1.66143  1.46634  0.26236  0.00000        *
+      1   1.62034  1.46101  2.09577  0.80477      1 u - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.04995  3.71472  3.71472  1.46634  0.26236  1.50249  0.25177
+      2   1.61228  1.42275  2.03579  0.84644      2 u - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.04811  3.75142  3.75142  1.46634  0.26236  0.22692  1.59448
+      3   1.29816  2.02841  0.90551  1.65503      3 g - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+      4   1.27128  1.88516  0.94878  1.71196      4 g - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+      5   2.39214  3.09549  0.20715  2.98743      5 G - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+      6   3.13217  0.25594  2.90124  2.06174      6 C - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+      7   2.87265  0.24622  2.80962  2.28795      7 C - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+      8   1.68120  2.27610  0.51345  2.18268      8 G - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.07418  2.97076  3.90062  0.66121  0.72613  1.09861  0.40547
+      9   2.55429  2.52778  3.06936  0.22820     10 U - - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     10   2.55429  2.52778  3.06936  0.22820     11 U - - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     11   0.26628  2.83571  2.35745  2.52026     12 A - - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     12   2.77408  0.21654  3.34930  2.33116     13 C - - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     13   3.13218  0.25594  2.90125  2.06175     14 C - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     14   2.90343  1.85418  2.64627  0.33175     15 U - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     15   1.64887  2.63991  0.42081  2.52761     16 G - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     16   3.13571  0.25552  2.90290  2.06235     17 C - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     17   0.36748  2.70007  1.78040  2.63452     18 A - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     18   2.54639  3.17803  0.17945  3.11808     19 G - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     19   2.77408  0.21654  3.34930  2.33116     20 C - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     20   2.55429  2.52778  3.06936  0.22820     21 U - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     21   2.63875  3.50800  0.15924  3.08351     22 G - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     22   0.16531  3.17973  2.90967  2.87749     23 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     23   2.55429  2.52778  3.06936  0.22820     24 U - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     24   2.63875  3.50800  0.15924  3.08351     25 G - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     25   0.16531  3.17973  2.90967  2.87749     26 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     26   2.55311  3.18579  0.17787  3.12896     27 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     27   3.14279  0.25469  2.90619  2.06356     28 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     28   2.86110  1.83249  2.61025  0.34353     29 U - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     29   3.12324  0.25699  2.89707  2.06021     30 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     30   2.77408  0.21654  3.34930  2.33116     31 C - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     31   0.16531  3.17973  2.90967  2.87749     32 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     32   0.16531  3.17973  2.90967  2.87749     33 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     33   0.66660  2.09592  1.64667  1.76667     34 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     34   0.16531  3.17973  2.90967  2.87749     35 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     35   0.16531  3.17973  2.90967  2.87749     36 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     36   2.33798  3.06863  0.22125  2.89182     37 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.05486  3.90062  3.40676  1.46634  0.26236  1.09861  0.40547
+     37   0.38820  2.79614  1.67049  2.62387     38 A - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04185  3.88761  3.88761  1.46634  0.26236  0.79775  0.59846
+     38   2.33616  3.06620  0.22181  2.88886     39 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     39   3.30407  0.21379  3.00346  2.24303     40 C - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     40   2.63875  3.50800  0.15924  3.08351     41 G - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     41   0.16531  3.17973  2.90967  2.87749     42 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     42   0.16531  3.17973  2.90967  2.87749     43 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     43   0.36687  2.70221  1.78074  2.63767     44 A - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     44   3.14057  0.25495  2.90516  2.06318     45 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     45   3.13879  0.25516  2.90433  2.06288     46 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.15593  2.08625  3.90062  1.14404  0.38350  1.09861  0.40547
+     46   1.24976  1.91457  1.63202  0.99294     51 u - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.15593  2.08625  3.90062  0.80827  0.58992  1.09861  0.40547
+     47   0.81292  2.22612  1.30636  1.72772     54 a - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     48   1.28765  1.61885  2.15581  0.89125     55 u - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     49   1.64210  1.76568  2.19860  0.64551     56 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     50   0.28651  2.78811  2.27473  2.46793     57 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     51   2.33967  3.07087  0.22073  2.89456     58 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     52   2.33966  3.07086  0.22073  2.89455     59 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     53   2.86227  2.06758  2.51261  0.30746     60 U - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     54   2.77408  0.21654  3.34930  2.33116     61 C - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     55   3.32358  0.21190  3.01197  2.24680     62 C - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     56   2.86281  2.06764  2.51281  0.30739     63 U - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     57   2.34004  3.07136  0.22061  2.89516     64 G - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     58   2.76328  0.48300  2.45809  1.45077     65 C - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     59   0.37592  2.83207  1.69132  2.65672     66 A - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     60   2.34367  3.07620  0.21949  2.90108     67 G - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     61   2.55429  2.52778  3.06936  0.22820     68 U - - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     62   0.16531  3.17973  2.90967  2.87749     69 A - - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     63   2.14420  0.55656  2.71929  1.41166     70 C - - -
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     64   2.39469  1.59253  1.87945  0.59291     71 U - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     65   2.53045  2.97714  0.20945  2.84031     72 G - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     66   2.33999  3.07129  0.22063  2.89508     73 G - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     67   3.20820  0.25953  2.92763  2.00521     74 C - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     68   1.98104  1.14215  1.62238  1.06273     75 u - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
+     69   1.61663  2.00825  1.87483  0.66586     76 U - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.19731  3.90062  1.83991  1.46634  0.26236  1.09861  0.40547
+     70   0.81558  2.17566  1.32970  1.71742     77 a - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.04811  3.75142  3.75142  1.46634  0.26236  2.28762  0.10704
+     71   0.81612  1.82472  1.79275  1.46927     78 a - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.04811  3.75142  3.75142  1.46634  0.26236  2.28762  0.10704
+     72   1.34010  1.90825  1.16493  1.28051     79 g - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.04811  3.75142  3.75142  1.46634  0.26236  2.28762  0.10704
+     73   0.90336  1.74956  1.59163  1.52624     80 a - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.04811  3.75142  3.75142  1.46634  0.26236  2.28762  0.10704
+     74   1.18139  1.49660  1.80689  1.18714     81 a - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.04811  3.75142  3.75142  1.46634  0.26236  2.28762  0.10704
+     75   1.10246  1.68127  1.41247  1.43435     82 a - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.15306  3.75142  2.13335  1.46634  0.26236  2.28762  0.10704
+     76   1.27283  1.40257  1.54710  1.34272     83 a - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.05329  3.65165  3.65165  1.46634  0.26236  2.63151  0.07469
+     77   1.34601  1.64433  2.07238  0.86584     84 u - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.49277  0.94400        *  0.13173  2.09216  0.00000        *
+//
Binary file test-data/Hammerhead_HH9.pdf has changed
Binary file test-data/Hammerhead_II.pdf has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hammerheadClan.cm	Fri Oct 20 04:31:43 2017 -0400
@@ -0,0 +1,1447 @@
+INFERNAL1/a [1.1 | October 2013]
+NAME     Hammerhead_HH10
+ACC      RF02277
+STATES   384
+NODES    97
+CLEN     125
+W        144
+ALPH     RNA
+RF       no
+CONS     yes
+MAP      yes
+DATE     Thu Feb 20 19:56:21 2014
+COM      [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED
+COM      [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM
+PBEGIN   0.05
+PEND     0.05
+WBETA    1e-07
+QDBBETA1 1e-07
+QDBBETA2 1e-15
+N2OMEGA  1.52588e-05
+N3OMEGA  1.52588e-05
+ELSELF   -0.08926734
+NSEQ     18
+EFFN     0.962402
+CKSUM    3402290674
+NULL     0.000  0.000  0.000  0.000 
+GA       75.00
+TC       83.00
+NC       68.00
+EFP7GF   -5.2222 0.71834
+ECMLC    0.67226    -5.99835     2.14435     1600000      286094  0.004194
+ECMGC    0.39225   -16.80988    -7.07053     1600000       18247  0.021921
+ECMLI    0.60414    -4.80295     3.82929     1600000      220830  0.005434
+ECMGI    0.45551    -9.18438    -0.78188     1600000       18377  0.021766
+CM
+                                             [ ROOT    0 ]      -      - - - - -
+     S     0    -1 0     1     4     1     1   144   166  -6.485  -6.692  -0.074  -5.106                 
+    IL     1     1 2     1     4    27    71   148   169  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR     2     2 3     2     3    27    70   147   169  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL    1 ]      1      - u - - -
+    ML     3     2 3     5     3    27    70   144   166  -7.540  -0.028  -6.194                          0.306 -0.505 -0.844  0.587 
+     D     4     2 3     5     3    22    65   143   164  -6.174  -1.687  -0.566                         
+    IL     5     5 3     5     3    26    69   146   168  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL    2 ]      2      - a - - -
+    ML     6     5 3     8     3    26    69   143   165  -7.540  -0.028  -6.194                          0.988 -1.096 -0.227 -0.526 
+     D     7     5 3     8     3    21    64   142   163  -6.174  -1.687  -0.566                         
+    IL     8     8 3     8     3    25    68   145   166  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL    3 ]      3      - a - - -
+    ML     9     8 3    11     3    25    68   142   164  -7.540  -0.028  -6.194                          0.990 -0.979 -0.488 -0.332 
+     D    10     8 3    11     3    20    63   141   162  -6.174  -1.687  -0.566                         
+    IL    11    11 3    11     3    25    68   144   165  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL    4 ]      4      - a - - -
+    ML    12    11 3    14     3    24    67   141   163  -7.540  -0.028  -6.194                          0.838 -0.660 -0.654 -0.083 
+     D    13    11 3    14     3    20    62   140   161  -6.174  -1.687  -0.566                         
+    IL    14    14 3    14     3    24    67   143   164  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL    5 ]      5      - A - - -
+    ML    15    14 3    17     3    24    66   140   162  -7.540  -0.028  -6.194                          1.114 -1.046 -0.756 -0.397 
+     D    16    14 3    17     3    19    62   139   160  -6.174  -1.687  -0.566                         
+    IL    17    17 3    17     3    23    66   142   163  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL    6 ]      6      - A - - -
+    ML    18    17 3    20     3    23    65   139   161  -7.540  -0.028  -6.194                          1.323 -1.350 -0.895 -0.815 
+     D    19    17 3    20     3    18    61   138   159  -6.174  -1.687  -0.566                         
+    IL    20    20 3    20     3    22    65   141   162  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL    7 ]      7      - a - - -
+    ML    21    20 3    23     3    22    65   138   159  -7.962  -0.025  -6.280                          0.557 -0.700 -0.383  0.197 
+     D    22    20 3    23     3    18    60   137   158  -5.620  -0.734  -1.403                         
+    IL    23    23 3    23     3    21    64   139   160  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    8 ]      -    133 - a - -
+    MR    24    23 3    26     3    22    64   137   158  -7.962  -0.025  -6.280                          0.727 -0.433 -0.471 -0.179 
+     D    25    23 3    26     3    16    58   135   157  -6.390  -1.568  -0.620                         
+    IR    26    26 3    26     3    21    63   138   159  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    9 ]      -    132 - a - -
+    MR    27    26 3    29     3    21    63   136   157  -7.962  -0.025  -6.280                          0.594 -0.566 -0.806  0.314 
+     D    28    26 3    29     3    15    57   134   156  -6.390  -1.568  -0.620                         
+    IR    29    29 3    29     3    20    62   137   158  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   10 ]      -    131 - a - -
+    MR    30    29 3    32     3    21    63   135   156  -7.962  -0.025  -6.280                          0.736 -0.172 -0.837 -0.174 
+     D    31    29 3    32     3    15    55   134   155  -6.390  -1.568  -0.620                         
+    IR    32    32 3    32     3    19    61   136   157  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   11 ]      -    130 - g - -
+    MR    33    32 3    35     5    20    62   134   155  -6.730  -0.050  -6.546  -6.758  -7.650          0.482 -1.086  0.502 -0.484 
+     D    34    32 3    35     5    14    54   133   154  -5.352  -0.707  -2.978  -4.409  -2.404         
+    IR    35    35 3    35     5    18    59   134   156  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   12 ]      8    129 u a - -
+    MP    36    35 3    40     6    22    62   133   154  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -1.947 -2.633 -2.808  0.807 -2.371 -3.585  1.735 -2.862 -2.845  1.182 -3.351 -0.760  2.451 -2.957 -0.044 -1.833 
+    ML    37    35 3    40     6    16    56   132   153  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    38    35 3    40     6    15    56   131   153  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    39    35 3    40     6    11    50   129   150  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    40    40 5    40     6    17    58   133   154  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    41    41 6    41     5    17    59   132   154  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   13 ]      9    128 G C - -
+    MP    42    41 6    46     6    21    61   131   152  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.358 -2.490 -3.421  0.958 -3.514 -4.008  0.762 -3.659 -2.238  3.103 -3.811 -0.262  0.413 -3.427 -1.177 -2.392 
+    ML    43    41 6    46     6    15    56   130   151  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    44    41 6    46     6    15    55   129   151  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    45    41 6    46     6    11    50   127   148  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    46    46 5    46     6    17    57   131   152  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    47    47 6    47     5    17    58   130   152  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   14 ]     10    127 u a - -
+    MP    48    47 6    52     6    20    60   129   150  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.350 -3.208 -3.275  0.418 -2.399 -3.891  1.896 -3.049 -3.307  0.811 -3.717 -1.205  2.692 -3.504  0.163 -2.197 
+    ML    49    47 6    52     6    15    55   128   149  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    50    47 6    52     6    15    54   127   149  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    51    47 6    52     6    11    49   125   146  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    52    52 5    52     6    16    57   129   150  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    53    53 6    53     5    17    57   128   150  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   15 ]     11    126 u a - -
+    MP    54    53 6    58     6    19    58   127   148  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.458 -3.230 -3.368  0.410 -2.487 -3.992  1.818 -3.122 -3.384  0.828 -3.788 -1.143  2.793 -3.627 -0.182 -2.268 
+    ML    55    53 6    58     6    14    54   126   147  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    56    53 6    58     6    14    53   126   147  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    57    53 6    58     6    10    49   123   144  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    58    58 5    58     6    16    55   127   148  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    59    59 6    59     5    16    56   126   148  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   16 ]     12    125 u a - -
+    MP    60    59 6    64     6    18    56   125   146  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.179 -3.125 -3.162  0.447 -1.584 -3.825  1.873 -3.001 -3.190  0.745 -3.634 -1.207  2.712 -3.370 -0.108 -2.113 
+    ML    61    59 6    64     6    14    53   124   145  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    62    59 6    64     6    13    52   124   145  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    63    59 6    64     6    10    48   121   143  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    64    64 5    64     6    15    54   125   146  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    65    65 6    65     5    15    54   125   146  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   17 ]     13    124 C G - -
+    MP    66    65 6    70     6    16    54   123   144  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.764 -3.576 -3.575  0.101 -2.498 -4.085  3.200 -3.222 -3.609  0.506 -3.943 -1.514  1.080 -3.877 -0.196 -2.480 
+    ML    67    65 6    70     6    13    52   122   143  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    68    65 6    70     6    12    50   122   143  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    69    65 6    70     6    10    48   120   141  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    70    70 5    70     6    14    53   123   144  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    71    71 6    71     5    14    53   123   144  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   18 ]     14    123 u a - -
+    MP    72    71 6    76     4    15    52   121   142  -6.485  -6.692  -0.074  -5.106                 -3.458 -3.230 -3.368  0.410 -2.487 -3.992  1.818 -3.122 -3.384  0.828 -3.788 -1.143  2.793 -3.627 -0.182 -2.268 
+    ML    73    71 6    76     4    12    51   121   142  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR    74    71 6    76     4    11    49   121   142  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D    75    71 6    76     4     9    48   119   141  -4.568  -4.250  -2.265  -0.520                 
+    IL    76    76 5    76     4    14    52   122   144  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR    77    77 6    77     3    13    51   122   143  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   19 ]     15      - u - - -
+    ML    78    77 6    80     5    13    50   119   140  -6.730  -0.050  -6.546  -6.758  -7.650         -0.341 -0.517 -0.874  0.975 
+     D    79    77 6    80     5     9    47   118   139  -4.959  -0.803  -4.221  -2.596  -2.508         
+    IL    80    80 3    80     5    12    50   119   140  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   20 ]     16    122 G C - -
+    MP    81    80 3    85     6    13    50   118   139  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.931 -2.716 -3.988  0.711 -4.091 -4.346  0.358 -4.146 -3.747  3.360 -4.149 -0.400 -0.057 -3.923 -1.643 -2.878 
+    ML    82    80 3    85     6    10    47   116   138  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    83    80 3    85     6    10    47   116   137  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    84    80 3    85     6     7    44   114   135  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    85    85 5    85     6    11    48   118   139  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    86    86 6    86     5    11    48   117   138  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   21 ]     17    121 a u - -
+    MP    87    86 6    91     6    11    48   116   137  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.218 -2.412 -3.266  2.739 -3.316 -4.351  0.957 -3.331 -3.190  1.721 -3.706 -0.001  0.529 -3.635 -0.992 -2.142 
+    ML    88    86 6    91     6     9    46   115   136  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    89    86 6    91     6     9    46   114   136  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    90    86 6    91     6     6    43   112   133  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    91    91 5    91     6    10    47   116   137  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    92    92 6    92     5    10    47   115   136  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   22 ]     18    120 C G - -
+    MP    93    92 6    97     4     9    46   114   135  -6.445  -7.690  -0.170  -3.399                 -3.764 -3.576 -3.575  0.101 -2.498 -4.085  3.200 -3.222 -3.609  0.506 -3.943 -1.514  1.080 -3.877 -0.196 -2.480 
+    ML    94    92 6    97     4     8    45   113   134  -2.408  -4.532  -1.293  -1.473                  0.368 -0.385 -0.191  0.094 
+    MR    95    92 6    97     4     8    45   113   134  -4.102 -12.528  -0.390  -2.485                  0.368 -0.385 -0.191  0.094 
+     D    96    92 6    97     4     6    43   111   132 -12.737 -14.007  -2.036  -0.404                 
+    IL    97    97 5    97     4     8    45   113   134  -2.817  -4.319  -0.613  -2.698                  0.000  0.000  0.000  0.000 
+    IR    98    98 6    98     3     8    45   114   135  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   23 ]      -    119 - U - -
+    MR    99    98 6   101     2     7    44   112   133  -7.756  -0.007                                 -0.662 -0.821 -1.334  1.266 
+     D   100    98 6   101     2     6    43   111   132  -4.737  -0.055                                 
+    IR   101   101 3   101     2     7    44   113   134  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
+                                             [ BIF    24 ]      -      - - - - -
+     B   102   101 3   103   153     6    43   111   132                                                 
+                                             [ BEGL   25 ]      -      - - - - -
+     S   103   102 1   104     4     0     0    30    49  -0.052  -6.618  -6.025  -6.665                 
+                                             [ MATP   26 ]     19     34 C G - -
+    MP   104   103 1   108     6     2     2    30    49  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.411 -3.264 -2.373  0.303 -2.666 -4.057  3.146 -3.280 -3.436  0.703 -3.858 -1.283  0.984 -3.599 -0.423 -2.368 
+    ML   105   103 1   108     6     1     1    29    47  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   106   103 1   108     6     1     1    28    47  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   107   103 1   108     6     0     0    26    45  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   108   108 5   108     6     1     1    30    49  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   109   109 6   109     5     1     1    29    48  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   27 ]     20     33 a u - -
+    MP   110   109 6   114     6     2     2    28    47  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.124 -2.311 -3.201  2.668 -3.406 -4.324  0.849 -3.329 -3.125  1.827 -3.656  0.283  0.506 -3.543 -1.086 -2.084 
+    ML   111   109 6   114     6     1     1    27    45  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   112   109 6   114     6     1     1    26    45  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   113   109 6   114     6     0     0    24    43  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   114   114 5   114     6     1     1    28    47  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   115   115 6   115     5     1     1    27    46  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   28 ]     21     32 G C - -
+    MP   116   115 6   120     6     2     2    26    45  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.931 -2.716 -3.988  0.711 -4.091 -4.346  0.358 -4.146 -3.747  3.360 -4.149 -0.400 -0.057 -3.923 -1.643 -2.878 
+    ML   117   115 6   120     6     1     1    25    43  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   118   115 6   120     6     1     1    24    43  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   119   115 6   120     6     0     0    22    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   120   120 5   120     6     1     1    26    45  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   121   121 6   121     5     1     1    25    44  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   29 ]     22     31 u g - -
+    MP   122   121 6   126     6     2     2    24    43  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.330 -3.202 -3.198  0.384 -2.228 -3.754  2.032 -2.913 -3.233  0.733 -3.606 -1.221  1.312 -3.477  2.260 -2.144 
+    ML   123   121 6   126     6     1     1    23    42  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   124   121 6   126     6     1     1    23    41  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   125   121 6   126     6     0     0    21    39  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   126   126 5   126     6     1     1    24    43  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   127   127 6   127     5     1     1    23    42  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   30 ]     23     30 u a - -
+    MP   128   127 6   132     6     2     2    22    41  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.458 -3.230 -3.368  0.410 -2.487 -3.992  1.818 -3.122 -3.384  0.828 -3.788 -1.143  2.793 -3.627 -0.182 -2.268 
+    ML   129   127 6   132     6     1     1    21    40  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   130   127 6   132     6     1     1    21    40  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   131   127 6   132     6     0     0    20    38  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   132   132 5   132     6     1     1    22    41  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   133   133 6   133     5     1     1    21    40  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   31 ]     24     29 G C - -
+    MP   134   133 6   138     4     2     2    20    39  -6.485  -6.692  -0.074  -5.106                 -3.616 -1.822 -3.677  0.897 -3.953 -4.168  0.418 -3.959 -3.570  3.254 -3.987 -0.263  0.096 -3.625 -1.539 -2.621 
+    ML   135   133 6   138     4     1     1    21    39  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR   136   133 6   138     4     1     1    20    39  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D   137   133 6   138     4     0     0    19    38  -4.568  -4.250  -2.265  -0.520                 
+    IL   138   138 5   138     4     1     1    22    41  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR   139   139 6   139     3     1     1    21    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   32 ]     25      - C - - -
+    ML   140   139 6   142     3     1     1    17    35  -7.540  -0.028  -6.194                         -0.791  1.219 -1.560 -0.406 
+     D   141   139 6   142     3     0     0    16    35  -6.174  -1.687  -0.566                         
+    IL   142   142 3   142     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   33 ]     26      - C - - -
+    ML   143   142 3   145     3     1     1    15    34  -7.540  -0.028  -6.194                         -0.791  1.219 -1.560 -0.406 
+     D   144   142 3   145     3     0     0    15    33  -6.174  -1.687  -0.566                         
+    IL   145   145 3   145     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   34 ]     27      - U - - -
+    ML   146   145 3   148     3     1     1    13    32  -7.540  -0.028  -6.194                         -0.752 -0.890 -1.433  1.320 
+     D   147   145 3   148     3     0     0    13    32  -6.174  -1.687  -0.566                         
+    IL   148   148 3   148     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   35 ]     28      - A - - -
+    ML   149   148 3   151     2     1     1     1     1       *   0.000                                  1.208 -1.231 -0.642 -0.684 
+     D   150   148 3   151     2     0     0     0     0       *   0.000                                 
+    IL   151   151 3   151     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
+                                             [ END    36 ]      -      - - - - -
+     E   152   151 3    -1     0     0     0     0     0                                                 
+                                             [ BEGR   37 ]      -      - - - - -
+     S   153   102 1   154     3     0    30    95   115  -7.540  -0.028  -6.194                         
+    IL   154   154 2   154     3     1    30    97   118  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   38 ]     35      - A - - -
+    ML   155   154 2   157     3     1    30    95   115  -7.540  -0.028  -6.194                          1.458 -1.546 -1.259 -1.020 
+     D   156   154 2   157     3     0    24    93   114  -6.174  -1.687  -0.566                         
+    IL   157   157 3   157     3     1    29    96   117  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   39 ]     36      - U - - -
+    ML   158   157 3   160     3     1    29    94   114  -7.540  -0.028  -6.194                         -0.595 -0.605 -1.294  1.185 
+     D   159   157 3   160     3     0    24    92   113  -6.174  -1.687  -0.566                         
+    IL   160   160 3   160     3     1    28    95   116  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   40 ]     37      - G - - -
+    ML   161   160 3   163     3     1    28    92   113  -7.540  -0.028  -6.194                         -0.695 -1.750  1.395 -1.138 
+     D   162   160 3   163     3     0    23    91   112  -6.174  -1.687  -0.566                         
+    IL   163   163 3   163     3     1    28    94   115  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   41 ]     38      - A - - -
+    ML   164   163 3   166     3     1    28    91   112  -7.540  -0.028  -6.194                          1.458 -1.546 -1.259 -1.020 
+     D   165   163 3   166     3     0    22    90   111  -6.174  -1.687  -0.566                         
+    IL   166   166 3   166     3     1    27    93   114  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   42 ]     39      - G - - -
+    ML   167   166 3   169     3     1    27    90   111  -7.540  -0.028  -6.194                         -0.695 -1.750  1.395 -1.138 
+     D   168   166 3   169     3     0    21    89   110  -6.174  -1.687  -0.566                         
+    IL   169   169 3   169     3     1    26    92   113  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   43 ]     40      - C - - -
+    ML   170   169 3   172     3     1    26    89   110  -7.540  -0.028  -6.194                         -0.791  1.219 -1.560 -0.406 
+     D   171   169 3   172     3     0    20    88   109  -6.174  -1.687  -0.566                         
+    IL   172   172 3   172     3     1    25    91   112  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   44 ]     41      - U - - -
+    ML   173   172 3   175     3     1    26    88   109  -7.540  -0.028  -6.194                         -0.752 -0.890 -1.433  1.320 
+     D   174   172 3   175     3     0    19    87   108  -6.174  -1.687  -0.566                         
+    IL   175   175 3   175     3     1    25    90   111  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   45 ]     42      - C - - -
+    ML   176   175 3   178     5     1    25    87   108  -6.730  -0.100  -4.534  -6.758  -7.650         -0.791  1.219 -1.560 -0.406 
+     D   177   175 3   178     5     0    18    86   107  -4.959  -0.803  -4.221  -2.596  -2.508         
+    IL   178   178 3   178     5     1    23    88   108  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   46 ]     43    118 C G - -
+    MP   179   178 3   183     6     2    26    86   107  -8.928  -8.868  -0.024  -7.644  -7.924  -8.319 -3.677 -3.473 -3.500  0.193 -2.451 -4.020  3.140 -3.163 -3.533  0.628 -3.874 -1.407  1.132 -3.793 -0.149 -2.408 
+    ML   180   178 3   183     6     1    20    85   106  -6.462  -6.808  -1.045  -1.216  -6.658  -4.187  0.129  0.154 -0.550  0.151 
+    MR   181   178 3   183     6     1    20    85   105  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   182   178 3   183     6     0    15    82   103  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   183   183 5   183     6     1    22    86   107  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   184   184 6   184     5     1    22    86   106  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   47 ]     44    117 a u - -
+    MP   185   184 6   189     6     2    24    84   105  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.218 -2.412 -3.266  2.739 -3.316 -4.351  0.957 -3.331 -3.190  1.721 -3.706 -0.001  0.529 -3.635 -0.992 -2.142 
+    ML   186   184 6   189     6     1    20    83   103  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   187   184 6   189     6     1    19    83   103  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   188   184 6   189     6     0    15    80   101  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   189   189 5   189     6     1    21    84   105  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   190   190 6   190     5     1    21    84   104  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   48 ]     45    116 G C - -
+    MP   191   190 6   195     6     2    23    82   103  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.931 -2.716 -3.988  0.711 -4.091 -4.346  0.358 -4.146 -3.747  3.360 -4.149 -0.400 -0.057 -3.923 -1.643 -2.878 
+    ML   192   190 6   195     6     1    19    81   102  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   193   190 6   195     6     1    18    81   101  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   194   190 6   195     6     0    14    78    99  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   195   195 5   195     6     1    20    82   103  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   196   196 6   196     5     1    20    82   102  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   49 ]     46    115 u a - -
+    MP   197   196 6   201     6     2    21    80   101  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.179 -3.125 -3.162  0.447 -1.584 -3.825  1.873 -3.001 -3.190  0.745 -3.634 -1.207  2.712 -3.370 -0.108 -2.113 
+    ML   198   196 6   201     6     1    18    79   100  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   199   196 6   201     6     1    16    79   100  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   200   196 6   201     6     0    14    77    98  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   201   201 5   201     6     1    19    80   101  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   202   202 6   202     5     1    19    80   100  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   50 ]     47    114 a u - -
+    MP   203   202 6   207     4     2    19    78    99  -6.485  -6.692  -0.074  -5.106                 -2.915 -2.457 -2.979  2.605 -2.881 -3.901  1.229 -2.051 -3.013  1.519 -3.522 -0.284  0.845 -3.206 -0.668 -1.981 
+    ML   204   202 6   207     4     1    17    78    99  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR   205   202 6   207     4     1    15    78    99  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D   206   202 6   207     4     0    13    77    98  -4.568  -4.250  -2.265  -0.520                 
+    IL   207   207 5   207     4     1    18    80   100  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR   208   208 6   208     3     1    18    79   100  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   51 ]     48      - A - - -
+    ML   209   208 6   211     3     1    17    76    96  -7.540  -0.028  -6.194                          1.458 -1.546 -1.259 -1.020 
+     D   210   208 6   211     3     0    13    74    95  -6.174  -1.687  -0.566                         
+    IL   211   211 3   211     3     1    17    78    98  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   52 ]     49      - G - - -
+    ML   212   211 3   214     3     1    16    75    95  -7.540  -0.028  -6.194                         -0.695 -1.750  1.395 -1.138 
+     D   213   211 3   214     3     0    12    73    94  -6.174  -1.687  -0.566                         
+    IL   214   214 3   214     3     1    16    77    97  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   53 ]     50      - A - - -
+    ML   215   214 3   217     3     1    16    74    94  -7.962  -0.025  -6.280                          1.458 -1.546 -1.259 -1.020 
+     D   216   214 3   217     3     0    11    73    93  -5.620  -0.734  -1.403                         
+    IL   217   217 3   217     3     1    15    75    95  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   54 ]      -    113 - G - -
+    MR   218   217 3   220     3     1    15    73    93  -7.962  -0.025  -6.280                         -0.695 -1.750  1.395 -1.138 
+     D   219   217 3   220     3     0     9    71    92  -6.390  -1.568  -0.620                         
+    IR   220   220 3   220     3     1    14    74    94  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   55 ]      -    112 - A - -
+    MR   221   220 3   223     5     1    14    72    92  -6.730  -0.050  -6.546  -6.758  -7.650          1.458 -1.546 -1.259 -1.020 
+     D   222   220 3   223     5     0     8    71    91  -5.352  -0.707  -2.978  -4.409  -2.404         
+    IR   223   223 3   223     5     1    12    72    93  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   56 ]     51    111 g u - -
+    MP   224   223 3   228     6     2    14    71    91  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.140 -2.145 -3.259  1.373 -3.578 -4.354  0.714 -3.356 -3.076  1.990 -3.579  2.293  0.351 -3.633 -1.221 -2.081 
+    ML   225   223 3   228     6     1    10    70    90  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   226   223 3   228     6     1     9    69    90  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   227   223 3   228     6     0     5    67    88  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   228   228 5   228     6     1    11    71    91  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   229   229 6   229     5     1    11    70    91  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   57 ]     52    110 C G - -
+    MP   230   229 6   234     6     2    12    69    89  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.764 -3.576 -3.575  0.101 -2.498 -4.085  3.200 -3.222 -3.609  0.506 -3.943 -1.514  1.080 -3.877 -0.196 -2.480 
+    ML   231   229 6   234     6     1     9    68    88  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   232   229 6   234     6     1     8    68    88  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   233   229 6   234     6     0     5    66    86  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   234   234 5   234     6     1    10    69    89  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   235   235 6   235     5     1    10    68    89  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   58 ]     53    109 g u - -
+    MP   236   235 6   240     4     2    11    67    87  -6.485  -6.692  -0.074  -5.106                 -3.140 -2.145 -3.259  1.373 -3.578 -4.354  0.714 -3.356 -3.076  1.990 -3.579  2.293  0.351 -3.633 -1.221 -2.081 
+    ML   237   235 6   240     4     1     8    67    88  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR   238   235 6   240     4     1     6    66    87  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D   239   235 6   240     4     0     5    65    86  -4.568  -4.250  -2.265  -0.520                 
+    IL   240   240 5   240     4     1    10    68    89  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR   241   241 6   241     3     1     9    67    88  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   59 ]     54      - A - - -
+    ML   242   241 6   244     3     1     9    65    85  -7.540  -0.028  -6.194                          1.458 -1.546 -1.259 -1.020 
+     D   243   241 6   244     3     0     4    63    83  -6.174  -1.687  -0.566                         
+    IL   244   244 3   244     3     1     8    66    87  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   60 ]     55      - A - - -
+    ML   245   244 3   247     3     1     8    64    84  -7.962  -0.025  -6.280                          1.458 -1.546 -1.259 -1.020 
+     D   246   244 3   247     3     0     3    62    82  -5.620  -0.734  -1.403                         
+    IL   247   247 3   247     3     1     7    64    84  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   61 ]      -    108 - C - -
+    MR   248   247 3   250     3     1     8    63    83  -7.962  -0.025  -6.280                         -0.791  1.219 -1.560 -0.406 
+     D   249   247 3   250     3     0     2    61    81  -6.390  -1.568  -0.620                         
+    IR   250   250 3   250     3     1     7    63    83  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   62 ]      -    107 - C - -
+    MR   251   250 3   253     5     1     8    62    82  -6.730  -0.050  -6.546  -6.758  -7.650         -0.791  1.219 -1.560 -0.406 
+     D   252   250 3   253     5     0     1    60    80  -5.352  -0.707  -2.978  -4.409  -2.404         
+    IR   253   253 3   253     5     1     5    62    82  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   63 ]     56    106 a u - -
+    MP   254   253 3   258     6     2     8    61    81  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.218 -2.412 -3.266  2.739 -3.316 -4.351  0.957 -3.331 -3.190  1.721 -3.706 -0.001  0.529 -3.635 -0.992 -2.142 
+    ML   255   253 3   258     6     1     3    59    79  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   256   253 3   258     6     1     3    59    79  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   257   253 3   258     6     0     0    57    77  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   258   258 5   258     6     1     4    60    80  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   259   259 6   259     5     1     5    60    80  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   64 ]     57    105 C G - -
+    MP   260   259 6   264     6     2     7    59    79  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.764 -3.576 -3.575  0.101 -2.498 -4.085  3.200 -3.222 -3.609  0.506 -3.943 -1.514  1.080 -3.877 -0.196 -2.480 
+    ML   261   259 6   264     6     1     3    57    77  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   262   259 6   264     6     1     3    57    77  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   263   259 6   264     6     0     0    55    75  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   264   264 5   264     6     1     4    58    78  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   265   265 6   265     5     1     4    58    78  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   65 ]     58    104 C G - -
+    MP   266   265 6   270     6     2     6    57    77  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.764 -3.576 -3.575  0.101 -2.498 -4.085  3.200 -3.222 -3.609  0.506 -3.943 -1.514  1.080 -3.877 -0.196 -2.480 
+    ML   267   265 6   270     6     1     2    56    76  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   268   265 6   270     6     1     2    55    76  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   269   265 6   270     6     0     0    54    74  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   270   270 5   270     6     1     3    56    76  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   271   271 6   271     5     1     3    56    76  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   66 ]     59    103 a u - -
+    MP   272   271 6   276     4     2     4    55    75  -6.485  -6.692  -0.074  -5.106                 -3.218 -2.412 -3.266  2.739 -3.316 -4.351  0.957 -3.331 -3.190  1.721 -3.706 -0.001  0.529 -3.635 -0.992 -2.142 
+    ML   273   271 6   276     4     1     1    55    75  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR   274   271 6   276     4     1     1    54    74  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D   275   271 6   276     4     0     0    53    73  -4.568  -4.250  -2.265  -0.520                 
+    IL   276   276 5   276     4     1     3    56    76  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR   277   277 6   277     3     1     2    55    75  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   67 ]     60      - g - - -
+    ML   278   277 6   280     3     1     2    52    72  -7.962  -0.025  -6.280                         -0.052 -0.640  0.664 -0.306 
+     D   279   277 6   280     3     0     0    51    71  -5.620  -0.734  -1.403                         
+    IL   280   280 3   280     3     1     1    53    73  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   68 ]      -    102 - U - -
+    MR   281   280 3   283     5     1     2    51    71  -6.730  -0.050  -6.546  -6.758  -7.650         -0.752 -0.890 -1.433  1.320 
+     D   282   280 3   283     5     0     0    50    70  -5.352  -0.707  -2.978  -4.409  -2.404         
+    IR   283   283 3   283     5     1     1    52    71  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   69 ]     61    101 u a - -
+    MP   284   283 3   288     6     2     4    50    70  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -2.847 -2.728 -2.924  0.709 -2.493 -3.685  1.611 -2.982 -2.969  1.171 -3.466 -0.838  2.623 -2.038 -0.300 -1.945 
+    ML   285   283 3   288     6     1     1    49    69  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   286   283 3   288     6     1     1    49    69  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   287   283 3   288     6     0     0    46    66  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   288   288 5   288     6     1     1    50    70  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   289   289 6   289     5     1     1    50    69  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   70 ]     62    100 u a - -
+    MP   290   289 6   294     6     2     3    48    68  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.335 -3.198 -3.263  0.427 -2.391 -3.881  1.902 -3.041 -3.295  0.816 -3.706 -1.199  2.675 -3.490  0.206 -2.187 
+    ML   291   289 6   294     6     1     1    47    67  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   292   289 6   294     6     1     1    47    67  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   293   289 6   294     6     0     0    45    65  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   294   294 5   294     6     1     1    48    68  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   295   295 6   295     5     1     1    48    68  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   71 ]     63     99 C G - -
+    MP   296   295 6   300     4     2     2    46    66  -6.485  -6.692  -0.074  -5.106                 -3.764 -3.576 -3.575  0.101 -2.498 -4.085  3.200 -3.222 -3.609  0.506 -3.943 -1.514  1.080 -3.877 -0.196 -2.480 
+    ML   297   295 6   300     4     1     1    46    66  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR   298   295 6   300     4     1     1    46    66  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D   299   295 6   300     4     0     0    45    65  -4.568  -4.250  -2.265  -0.520                 
+    IL   300   300 5   300     4     1     1    48    68  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR   301   301 6   301     3     1     1    47    67  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   72 ]     64      - U - - -
+    ML   302   301 6   304     3     1     1    44    63  -7.962  -0.025  -6.280                         -0.752 -0.890 -1.433  1.320 
+     D   303   301 6   304     3     0     0    43    62  -5.620  -0.734  -1.403                         
+    IL   304   304 3   304     3     1     1    45    64  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   73 ]      -     98 - U - -
+    MR   305   304 3   307     5     1     1    43    62  -6.730  -0.050  -6.546  -6.758  -7.650         -0.536 -0.468 -1.240  1.114 
+     D   306   304 3   307     5     0     0    41    61  -5.352  -0.707  -2.978  -4.409  -2.404         
+    IR   307   307 3   307     5     1     1    43    63  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   74 ]     65     97 C G - -
+    MP   308   307 3   312     6     2     2    42    61  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.764 -3.576 -3.575  0.101 -2.498 -4.085  3.200 -3.222 -3.609  0.506 -3.943 -1.514  1.080 -3.877 -0.196 -2.480 
+    ML   309   307 3   312     6     1     1    40    60  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   310   307 3   312     6     1     1    40    60  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   311   307 3   312     6     0     0    38    58  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   312   312 5   312     6     1     1    41    61  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   313   313 6   313     5     1     1    41    61  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   75 ]     66     96 a u - -
+    MP   314   313 6   318     6     2     2    40    59  -8.948  -8.887  -0.024  -7.664  -7.943  -8.338 -3.218 -2.412 -3.266  2.739 -3.316 -4.351  0.957 -3.331 -3.190  1.721 -3.706 -0.001  0.529 -3.635 -0.992 -2.142 
+    ML   315   313 6   318     6     1     1    38    58  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   316   313 6   318     6     1     1    38    58  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   317   313 6   318     6     0     0    36    56  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   318   318 5   318     6     1     1    39    59  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   319   319 6   319     5     1     1    39    59  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   76 ]     67     95 C G - -
+    MP   320   319 6   324     4     2     2    38    57  -2.383  -6.692  -0.415  -4.366                 -3.764 -3.576 -3.575  0.101 -2.498 -4.085  3.200 -3.222 -3.609  0.506 -3.943 -1.514  1.080 -3.877 -0.196 -2.480 
+    ML   321   319 6   324     4     1     1    37    56  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR   322   319 6   324     4     1     1    36    56  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D   323   319 6   324     4     0     0    35    55  -4.568  -4.250  -2.265  -0.520                 
+    IL   324   324 5   324     4     1     1    37    57  -2.339  -3.023  -0.605  -5.508                  0.000  0.000  0.000  0.000 
+    IR   325   325 6   325     3     1     1    37    57  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   77 ]     74      - c - - -
+    ML   326   325 6   328     3     1     1    34    54  -5.313  -0.057  -6.168                         -0.279  0.575 -0.890  0.198 
+     D   327   325 6   328     3     0     0    33    52  -6.339  -1.377  -0.731                         
+    IL   328   328 3   328     3     1     1    36    56  -1.489  -0.764  -4.189                          0.000  0.000  0.000  0.000 
+                                             [ MATL   78 ]     76      - c - - -
+    ML   329   328 3   331     3     1     1    33    52  -5.308  -0.057  -6.194                         -0.442  0.667 -1.194  0.310 
+     D   330   328 3   331     3     0     0    31    51  -6.174  -1.687  -0.566                         
+    IL   331   331 3   331     3     1     1    35    54  -1.491  -0.763  -4.191                          0.000  0.000  0.000  0.000 
+                                             [ MATL   79 ]     78      - A - - -
+    ML   332   331 3   334     3     1     1    32    51  -7.540  -0.028  -6.194                          1.018 -1.109 -0.278 -0.542 
+     D   333   331 3   334     3     0     0    30    50  -6.174  -1.687  -0.566                         
+    IL   334   334 3   334     3     1     1    34    53  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   80 ]     79      - c - - -
+    ML   335   334 3   337     3     1     1    31    50  -7.540  -0.028  -6.194                         -0.574  0.956 -1.338 -0.010 
+     D   336   334 3   337     3     0     0    29    49  -6.174  -1.687  -0.566                         
+    IL   337   337 3   337     3     1     1    33    52  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   81 ]     80      - u - - -
+    ML   338   337 3   340     3     1     1    29    49  -7.540  -0.028  -6.194                         -0.214 -0.625 -0.780  0.931 
+     D   339   337 3   340     3     0     0    28    48  -6.174  -1.687  -0.566                         
+    IL   340   340 3   340     3     1     1    32    51  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   82 ]     81      - G - - -
+    ML   341   340 3   343     3     1     1    28    48  -7.540  -0.028  -6.194                         -0.695 -1.750  1.395 -1.138 
+     D   342   340 3   343     3     0     0    27    46  -6.174  -1.687  -0.566                         
+    IL   343   343 3   343     3     1     1    31    50  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   83 ]     82      - A - - -
+    ML   344   343 3   346     3     1     1    27    46  -7.540  -0.028  -6.194                          1.458 -1.546 -1.259 -1.020 
+     D   345   343 3   346     3     0     0    26    45  -6.174  -1.687  -0.566                         
+    IL   346   346 3   346     3     1     1    30    49  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   84 ]     83      - A - - -
+    ML   347   346 3   349     3     1     1    26    45  -7.540  -0.057  -4.915                          1.250 -1.182 -1.046 -0.523 
+     D   348   346 3   349     3     0     0    25    44  -6.174  -1.687  -0.566                         
+    IL   349   349 3   349     3     1     1    29    48  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   85 ]     84      - A - - -
+    ML   350   349 3   352     3     1     1    25    44  -7.511  -0.028  -6.165                          1.240 -1.247 -0.732 -0.703 
+     D   351   349 3   352     3     0     0    24    43  -6.356  -1.869  -0.486                         
+    IL   352   352 3   352     3     1     1    27    47  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   86 ]     85      - c - - -
+    ML   353   352 3   355     3     1     1    24    43  -7.511  -0.028  -6.165                         -0.419  0.648 -1.167  0.309 
+     D   354   352 3   355     3     0     0    23    42  -6.356  -1.351  -0.747                         
+    IL   355   355 3   355     3     1     1    26    46  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   87 ]     86      - A - - -
+    ML   356   355 3   358     3     1     1    23    42  -7.540  -0.028  -6.194                          1.059 -1.129 -0.353 -0.566 
+     D   357   355 3   358     3     0     0    22    41  -6.174  -1.687  -0.566                         
+    IL   358   358 3   358     3     1     1    25    44  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   88 ]     87      - a - - -
+    ML   359   358 3   361     3     1     1    22    40  -7.540  -0.028  -6.194                          0.741 -0.687 -0.298 -0.162 
+     D   360   358 3   361     3     0     0    20    39  -6.174  -1.687  -0.566                         
+    IL   361   361 3   361     3     1     1    24    43  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   89 ]     88      - U - - -
+    ML   362   361 3   364     3     1     1    20    39  -7.540  -0.028  -6.194                         -0.752 -0.890 -1.433  1.320 
+     D   363   361 3   364     3     0     0    19    38  -6.174  -1.687  -0.566                         
+    IL   364   364 3   364     3     1     1    23    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   90 ]     89      - u - - -
+    ML   365   364 3   367     3     1     1    19    38  -7.540  -0.028  -6.194                         -0.286 -0.403 -1.064  0.960 
+     D   366   364 3   367     3     0     0    18    37  -6.174  -1.687  -0.566                         
+    IL   367   367 3   367     3     1     1    22    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   91 ]     90      - U - - -
+    ML   368   367 3   370     3     1     1    18    36  -7.540  -0.028  -6.194                         -0.752 -0.890 -1.433  1.320 
+     D   369   367 3   370     3     0     0    17    36  -6.174  -1.687  -0.566                         
+    IL   370   370 3   370     3     1     1    21    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   92 ]     91      - u - - -
+    ML   371   370 3   373     3     1     1    17    35  -7.540  -0.028  -6.194                         -0.268 -0.346 -1.049  0.925 
+     D   372   370 3   373     3     0     0    16    35  -6.174  -1.687  -0.566                         
+    IL   373   373 3   373     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   93 ]     92      - G - - -
+    ML   374   373 3   376     3     1     1    15    34  -7.540  -0.028  -6.194                         -0.180 -1.406  1.113 -0.794 
+     D   375   373 3   376     3     0     0    15    33  -6.174  -1.687  -0.566                         
+    IL   376   376 3   376     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   94 ]     93      - A - - -
+    ML   377   376 3   379     3     1     1    13    32  -7.540  -0.028  -6.194                          1.326 -1.353 -0.902 -0.819 
+     D   378   376 3   379     3     0     0    13    32  -6.174  -1.687  -0.566                         
+    IL   379   379 3   379     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   95 ]     94      - A - - -
+    ML   380   379 3   382     2     1     1     1     1       *   0.000                                  1.458 -1.546 -1.259 -1.020 
+     D   381   379 3   382     2     0     0     0     0       *   0.000                                 
+    IL   382   382 3   382     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
+                                             [ END    96 ]      -      - - - - -
+     E   383   382 3    -1     0     0     0     0     0                                                 
+//
+HMMER3/f [i1.1 | October 2013]
+NAME  Hammerhead_HH10
+ACC   RF02277
+LENG  125
+MAXL  234
+ALPH  RNA
+RF    no
+MM    no
+CONS  yes
+CS    yes
+MAP   yes
+DATE  Thu Feb 20 19:56:21 2014
+COM   [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED
+COM   [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM
+NSEQ  18
+EFFN  1.305176
+CKSUM 3402290674
+STATS LOCAL MSV       -9.6646  0.71834
+STATS LOCAL VITERBI  -11.1251  0.71834
+STATS LOCAL FORWARD   -3.3883  0.71834
+HMM          A        C        G        U   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.31993  1.46967  1.39447  1.36696
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  0.00000        *
+      1   1.17390  1.76507  2.02746  0.94676      1 u - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+      2   0.64831  2.23977  1.54517  1.84952      2 A - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+      3   0.65295  2.13248  1.75167  1.67417      3 A - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+      4   0.76528  1.87250  1.88046  1.47605      4 a - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+      5   0.55779  2.19202  1.97470  1.73143      5 A - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+      6   0.39413  2.47350  2.11236  2.11617      6 A - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+      7   0.98084  1.91173  1.65934  1.24856      7 a - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+      8   1.96420  1.50462  1.74504  0.77004      8 u - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+      9   1.99781  2.27848  0.42994  2.19482      9 G - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     10   2.38041  1.44557  2.07312  0.60498     10 U - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     11   2.42360  1.52021  2.09512  0.56269     11 U - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     12   2.33723  1.42387  2.08460  0.61940     12 U - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     13   2.65196  0.42513  2.34404  1.71554     13 C - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     14   2.42307  1.52023  2.09497  0.56279     14 U - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     15   1.71613  1.80130  2.07339  0.63602     15 U - - -
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     16   2.22878  2.63319  0.29402  2.58719     16 G - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     17   0.65542  2.16514  1.40212  2.12056     17 A - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     18   2.65149  0.42523  2.34387  1.71548     18 C - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     19   2.43373  0.44509  2.20523  1.82448     19 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     20   0.70874  2.23169  1.26747  2.12995     20 a - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     21   2.23256  2.63635  0.29269  2.59202     21 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     22   2.43372  1.33643  2.14682  0.62988     22 U - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     23   2.42426  1.52018  2.09532  0.56255     23 U - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     24   1.99566  2.52831  0.36273  2.42470     24 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     25   2.17379  0.40915  2.72472  1.85487     25 C - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     26   2.17379  0.40915  2.72472  1.85487     26 C - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     27   2.09629  2.15268  2.58468  0.37761     27 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     28   0.48113  2.36115  1.88928  1.99197     28 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     29   2.65038  0.40696  2.34838  1.78272     29 C - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     30   0.64330  2.26742  1.35639  2.17794     30 A - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     31   1.79770  2.31365  0.47282  2.18769     31 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     32   2.81004  0.34137  2.46196  1.93981     32 C - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     33   2.34859  1.54152  2.04266  0.57847     33 U - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     34   2.06324  2.36206  0.39023  2.28446     34 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     35   0.29131  2.67390  2.45444  2.32461     35 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     36   1.93373  1.88311  2.42906  0.48588     36 U - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     37   2.09976  2.87883  0.30760  2.45216     37 G - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     38   0.29131  2.67390  2.45444  2.32461     38 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     39   2.09976  2.87883  0.30760  2.45216     39 G - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     40   2.17379  0.40915  2.72472  1.85487     40 C - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     41   2.09629  2.15268  2.58468  0.37761     41 U - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     42   2.17379  0.40915  2.72472  1.85487     42 C - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     43   2.48591  0.48475  2.22964  1.64335     43 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     44   0.66105  2.15526  1.40375  2.10255     44 A - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     45   2.21578  2.62235  0.29866  2.57066     45 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+     46   2.32823  1.42466  2.08167  0.62135     46 U - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
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+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+    120   2.33054  0.50550  2.10063  1.73062    128 C - - )
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+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
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+    122   1.03997  2.23062  0.97773  1.81455    130 g - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+    123   0.83295  1.48589  2.03402  1.56961    131 a - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+    124   0.94972  1.80591  1.99747  1.16108    132 a - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.05453  3.62935  3.62935  1.46634  0.26236  1.09861  0.40547
+    125   0.84573  1.69167  1.73001  1.56417    133 a - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.02763  3.60246        *  1.46634  0.26236  0.00000        *
+//
+INFERNAL1/a [1.1 | October 2013]
+NAME     Hammerhead_II
+ACC      RF02276
+STATES   210
+NODES    56
+CLEN     67
+W        124
+ALPH     RNA
+RF       no
+CONS     yes
+MAP      yes
+DATE     Thu Feb 20 19:56:18 2014
+COM      [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED
+COM      [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM
+PBEGIN   0.05
+PEND     0.05
+WBETA    1e-07
+QDBBETA1 1e-07
+QDBBETA2 1e-15
+N2OMEGA  1.52588e-05
+N3OMEGA  1.52588e-05
+ELSELF   -0.08926734
+NSEQ     24
+EFFN     6.688477
+CKSUM    4291876430
+NULL     0.000  0.000  0.000  0.000 
+GA       37.00
+TC       37.20
+NC       36.90
+EFP7GF   -13.8733 0.71896
+ECMLC    0.62082    -6.61527     2.51165     1600000      346727  0.003461
+ECMGC    0.39165   -17.92510    -4.69636     1600000       71150  0.005622
+ECMLI    0.59885    -5.46981     3.52027     1600000      261397  0.004591
+ECMGI    0.40082   -14.89113    -2.31008     1600000       61958  0.006456
+CM
+                                             [ ROOT    0 ]      -      - - - - -
+     S     0    -1 0     1     4     0     1   124   193  -8.182  -8.389  -0.022  -6.803                 
+    IL     1     1 2     1     4     3    29   126   195  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR     2     2 3     2     3     3    29   126   195  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL    1 ]      1      - A - - -
+    ML     3     2 3     5     3     3    29   124   193  -9.474  -0.009  -7.792                          1.126 -0.944 -0.736 -0.519 
+     D     4     2 3     5     3     0    24   122   191  -5.620  -0.734  -1.403                         
+    IL     5     5 3     5     3     2    27   124   193  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    2 ]      -     81 - g - -
+    MR     6     5 3     8     3     3    28   123   192  -9.474  -0.009  -7.792                          0.250 -0.263  0.358 -0.523 
+     D     7     5 3     8     3     0    22   121   190  -6.390  -1.568  -0.620                         
+    IR     8     8 3     8     3     2    27   123   192  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    3 ]      -     80 - a - -
+    MR     9     8 3    11     3     3    27   122   191  -9.474  -0.009  -7.792                          0.946 -0.837  0.098 -1.173 
+     D    10     8 3    11     3     0    21   120   189  -6.390  -1.568  -0.620                         
+    IR    11    11 3    11     3     2    26   122   191  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    4 ]      -     79 - A - -
+    MR    12    11 3    14     3     3    26   121   190  -9.474  -0.009  -7.792                          1.395 -1.066 -1.183 -1.147 
+     D    13    11 3    14     3     0    20   119   188  -6.390  -1.568  -0.620                         
+    IR    14    14 3    14     3     1    25   121   190  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    5 ]      -     78 - a - -
+    MR    15    14 3    17     3     2    25   120   189  -9.474  -0.009  -7.792                          0.695 -0.286 -0.177 -0.564 
+     D    16    14 3    17     3     0    19   118   187  -6.390  -1.568  -0.620                         
+    IR    17    17 3    17     3     1    24   120   189  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    6 ]      -     77 - C - -
+    MR    18    17 3    20     3     2    24   119   188  -9.474  -0.009  -7.792                         -0.986  1.194 -1.687 -0.157 
+     D    19    17 3    20     3     0    18   117   186  -6.390  -1.568  -0.620                         
+    IR    20    20 3    20     3     1    23   119   188  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    7 ]      -     76 - C - -
+    MR    21    20 3    23     3     2    23   118   187  -9.474  -0.009  -7.792                         -0.429  1.463 -2.895 -1.452 
+     D    22    20 3    23     3     0    18   116   185  -6.390  -1.568  -0.620                         
+    IR    23    23 3    23     3     1    22   118   187  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    8 ]      -     75 - G - -
+    MR    24    23 3    26     3     2    22   117   186  -9.474  -0.009  -7.792                         -2.018 -4.161  1.854 -3.600 
+     D    25    23 3    26     3     0    17   115   184  -6.390  -1.568  -0.620                         
+    IR    26    26 3    26     3     1    21   117   186  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR    9 ]      -     74 - A - -
+    MR    27    26 3    29     5     1    21   116   185  -8.161  -0.019  -7.976  -8.188  -9.080          1.943 -4.572 -4.036 -4.290 
+     D    28    26 3    29     5     0    16   114   183  -5.352  -0.707  -2.978  -4.409  -2.404         
+    IR    29    29 3    29     5     1    19   116   185  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   10 ]      2     73 g c - -
+    MP    30    29 3    34     6     2    20   115   184  -9.707  -9.647  -0.014  -8.423  -8.703  -9.098 -2.873  1.113 -3.001  0.720 -3.187 -1.694  0.446 -3.393 -3.093  2.292 -3.559 -0.568  0.244  1.280 -1.183 -2.157 
+    ML    31    29 3    34     6     1    17   113   182  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    32    29 3    34     6     1    16   113   182  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    33    29 3    34     6     0    13   110   179  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    34    34 5    34     6     1    18   114   183  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    35    35 6    35     5     1    18   114   183  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   11 ]      3     72 G G - -
+    MP    36    35 6    40     4     2    19   113   182  -8.182  -1.837  -0.499  -6.803                 -5.880 -5.839 -5.307 -2.092 -3.773 -5.557  2.064 -4.630 -5.363 -2.122  3.309 -3.814 -0.472 -5.847 -1.471 -4.187 
+    ML    37    35 6    40     4     1    16   112   181  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR    38    35 6    40     4     1    14   111   180  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D    39    35 6    40     4     0    13   110   178  -4.568  -4.250  -2.265  -0.520                 
+    IL    40    40 5    40     4     1    17   113   182  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR    41    41 6    41     3     1    18   112   181  -1.389  -0.735  -5.862                          0.000  0.000  0.000  0.000 
+                                             [ MATL   12 ]      4      - C - - -
+    ML    42    41 6    44     3     1    16   111   179  -9.137  -0.009  -7.791                         -4.221  1.930 -4.871 -3.293 
+     D    43    41 6    44     3     0    12   108   177  -6.174  -1.687  -0.566                         
+    IL    44    44 3    44     3     1    16   111   180  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   13 ]      5      - G - - -
+    ML    45    44 3    47     3     1    15   110   178  -9.137  -0.009  -7.791                         -3.671 -5.128  1.943 -4.410 
+     D    46    44 3    47     3     0    11   107   176  -6.174  -1.687  -0.566                         
+    IL    47    47 3    47     3     1    15   110   179  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   14 ]      6      - A - - -
+    ML    48    47 3    50     3     1    15   109   177  -9.137  -0.009  -7.791                          1.943 -4.572 -4.036 -4.290 
+     D    49    47 3    50     3     0    11   107   175  -6.174  -1.687  -0.566                         
+    IL    50    50 3    50     3     1    14   109   178  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   15 ]      7      - A - - -
+    ML    51    50 3    53     3     1    14   108   176  -9.474  -0.009  -7.792                          1.943 -4.572 -4.036 -4.290 
+     D    52    50 3    53     3     0    10   106   175  -5.620  -0.734  -1.403                         
+    IL    53    53 3    53     3     1    13   108   177  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   16 ]      -     69 - A - -
+    MR    54    53 3    56     3     1    13   107   175  -9.474  -0.009  -7.792                          1.943 -4.572 -4.036 -4.290 
+     D    55    53 3    56     3     0     9   104   173  -6.390  -1.568  -0.620                         
+    IR    56    56 3    56     3     1    12   107   176  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   17 ]      -     68 - G - -
+    MR    57    56 3    59     3     1    12   106   174  -9.474  -0.009  -7.792                         -3.671 -5.128  1.943 -4.410 
+     D    58    56 3    59     3     0     8   103   172  -6.390  -1.568  -0.620                         
+    IR    59    59 3    59     3     1    11   106   175  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   18 ]      -     67 - U - -
+    MR    60    59 3    62     3     1    11   105   173  -9.474  -0.009  -7.792                         -2.042  0.145 -2.867  1.330 
+     D    61    59 3    62     3     0     8   102   171  -6.390  -1.568  -0.620                         
+    IR    62    62 3    62     3     1    11   105   174  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   19 ]      -     66 - A - -
+    MR    63    62 3    65     3     1    10   104   172  -9.474  -0.009  -7.792                          1.943 -4.572 -4.036 -4.290 
+     D    64    62 3    65     3     0     7   102   170  -6.390  -1.568  -0.620                         
+    IR    65    65 3    65     3     1    10   104   173  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   20 ]      -     65 - G - -
+    MR    66    65 3    68     3     1     9   103   171  -9.474  -0.009  -7.792                         -3.671 -5.128  1.943 -4.410 
+     D    67    65 3    68     3     0     6   101   170  -6.390  -1.568  -0.620                         
+    IR    68    68 3    68     3     1     9   103   172  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   21 ]      -     64 - U - -
+    MR    69    68 3    71     3     1     8   102   170  -9.474  -0.009  -7.792                         -3.607 -3.287 -4.397  1.914 
+     D    70    68 3    71     3     0     6   100   169  -6.390  -1.568  -0.620                         
+    IR    71    71 3    71     3     1     8   102   171  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   22 ]      -     63 - C - -
+    MR    72    71 3    74     2     1     7   101   169  -9.683  -0.002                                 -4.221  1.930 -4.871 -3.293 
+     D    73    71 3    74     2     0     6   100   169  -4.432  -0.068                                 
+    IR    74    74 3    74     2     1     7   101   170  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
+                                             [ BIF    23 ]      -      - - - - -
+     B    75    74 3    76   138     0     6   100   168                                                 
+                                             [ BEGL   24 ]      -      - - - - -
+     S    76    75 1    77     4     0     0    77   145  -0.026  -7.584  -6.992  -7.632                 
+                                             [ MATP   25 ]      8     37 A U - -
+    MP    77    76 1    81     6     2     2    77   145  -9.707  -9.647  -0.014  -8.423  -8.703  -9.098 -5.223 -0.503 -5.208  3.762 -7.017 -8.009 -2.589 -5.236 -5.012 -0.479 -5.657 -1.246 -2.676 -6.491 -4.448 -3.961 
+    ML    78    76 1    81     6     1     1    74   143  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    79    76 1    81     6     1     1    74   143  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    80    76 1    81     6     0     0    70   139  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    81    81 5    81     6     1     1    76   145  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    82    82 6    82     5     1     1    76   144  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   26 ]      9     36 C G - -
+    MP    83    82 6    87     6     2     2    75   143  -9.707  -9.647  -0.014  -8.423  -8.703  -9.098 -5.794 -5.869 -5.288 -2.023 -3.770 -5.552  3.732 -0.472 -5.359 -1.929 -5.539 -3.926 -0.360 -5.751 -1.469 -4.165 
+    ML    84    82 6    87     6     1     1    73   141  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    85    82 6    87     6     1     1    72   141  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    86    82 6    87     6     0     0    68   137  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    87    87 5    87     6     1     1    74   143  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    88    88 6    88     5     1     1    74   142  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   27 ]     10     35 g c - -
+    MP    89    88 6    93     6     2     2    73   141  -9.707  -4.620  -0.072  -8.423  -8.703  -9.098 -3.876 -3.043 -3.847  1.160 -3.828 -4.591  2.184 -4.056 -3.994  2.545 -4.412 -0.061  0.348 -3.872 -1.331 -2.750 
+    ML    90    88 6    93     6     1     1    71   139  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    91    88 6    93     6     1     1    70   139  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    92    88 6    93     6     0     0    67   135  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    93    93 5    93     6     1     1    72   141  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR    94    94 6    94     5     1     1    72   140  -2.848  -0.349  -6.359  -4.526  -5.632          0.000  0.000  0.000  0.000 
+                                             [ MATP   28 ]     11     33 c g - -
+    MP    95    94 6    99     6     2     2    71   139  -9.707  -9.647  -0.014  -8.423  -8.703  -9.098 -3.361 -3.032 -3.439  0.520 -3.140 -4.239  2.511 -3.545 -3.493  2.141 -1.123 -0.237  0.741 -3.544 -0.860 -2.421 
+    ML    96    94 6    99     6     1     1    69   138  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR    97    94 6    99     6     1     1    68   137  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D    98    94 6    99     6     0     0    65   134  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL    99    99 5    99     6     1     1    70   139  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   100   100 6   100     5     1     1    70   138  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   29 ]     12     32 c g - -
+    MP   101   100 6   105     6     2     2    69   137  -9.707  -9.647  -0.014  -8.423  -8.703  -9.098 -2.530 -2.652 -2.695  0.842 -1.309 -1.251  2.429 -2.868 -2.726  1.025 -3.287 -1.035  1.614 -2.843  0.157 -1.824 
+    ML   102   100 6   105     6     1     1    67   136  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   103   100 6   105     6     1     1    66   135  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   104   100 6   105     6     0     0    64   133  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   105   105 5   105     6     1     1    68   137  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   106   106 6   106     5     1     1    68   137  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   30 ]     13     31 C G - -
+    MP   107   106 6   111     4     2     2    67   135  -8.182  -8.389  -0.022  -6.803                 -4.304 -4.178 -4.245 -0.405 -3.289 -1.391  3.276 -3.954 -4.240  1.269 -4.671 -2.095  0.520 -4.466 -0.941 -3.105 
+    ML   108   106 6   111     4     1     1    66   134  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR   109   106 6   111     4     1     1    64   133  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D   110   106 6   111     4     0     0    63   132  -4.568  -4.250  -2.265  -0.520                 
+    IL   111   111 5   111     4     1     1    67   135  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR   112   112 6   112     3     1     1    66   135  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   31 ]     14      - c - - -
+    ML   113   112 6   115     3     1     1    65   133  -9.137  -0.009  -7.791                         -1.176  0.964 -0.435 -0.207 
+     D   114   112 6   115     3     0     0    62   130  -6.174  -1.687  -0.566                         
+    IL   115   115 3   115     3     1     1    65   134  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   32 ]     15      - c - - -
+    ML   116   115 3   118     3     1     1    64   132  -9.137  -0.062  -4.635                          0.067  0.278 -0.618  0.123 
+     D   117   115 3   118     3     0     0    60   129  -6.174  -1.687  -0.566                         
+    IL   118   118 3   118     3     1     1    64   133  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   33 ]     16      - g - - -
+    ML   119   118 3   121     3     1     1    63   132  -9.085  -0.009  -7.739                         -0.152  0.201  0.268 -0.422 
+     D   120   118 3   121     3     0     0    56   125  -6.977  -2.490  -0.297                         
+    IL   121   121 3   121     3     1     1    63   132  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   34 ]     17      - c - - -
+    ML   122   121 3   124     3     1     1    62   131  -1.504  -1.782  -1.488                          0.163  0.384 -0.825  0.015 
+     D   123   121 3   124     3     0     0    47   115  -6.977  -2.490  -0.297                         
+    IL   124   124 3   124     3     1     1    65   134  -0.386  -2.125  -7.497                          0.000  0.000  0.000  0.000 
+                                             [ MATL   35 ]     27      - u - - -
+    ML   125   124 3   127     3     1     1    16    34  -8.459  -0.015  -7.113                         -0.244 -0.355  0.240  0.254 
+     D   126   124 3   127     3     0     0    14    33  -9.315  -0.931  -1.077                         
+    IL   127   127 3   127     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   36 ]     28      - u - - -
+    ML   128   127 3   130     3     1     1    14    33  -8.872  -0.011  -7.526                         -0.069  0.058 -0.135  0.132 
+     D   129   127 3   130     3     0     0    13    32  -8.346  -0.240  -2.738                         
+    IL   130   130 3   130     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   37 ]     29      - g - - -
+    ML   131   130 3   133     3     1     1    12    31  -9.137  -0.009  -7.791                         -0.092 -1.123  0.652  0.045 
+     D   132   130 3   133     3     0     0    13    32  -6.174  -1.687  -0.566                         
+    IL   133   133 3   133     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   38 ]     30      - g - - -
+    ML   134   133 3   136     2     1     1     1     1       *   0.000                                 -0.247 -0.667  0.925 -0.670 
+     D   135   133 3   136     2     0     0     0     0       *   0.000                                 
+    IL   136   136 3   136     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
+                                             [ END    39 ]      -      - - - - -
+     E   137   136 3    -1     0     0     0     0     0                                                 
+                                             [ BEGR   40 ]      -      - - - - -
+     S   138    75 1   139     3     0     0    36    55  -9.137  -0.009  -7.791                         
+    IL   139   139 2   139     3     1     1    40    59  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   41 ]     38      - C - - -
+    ML   140   139 2   142     5     1     1    36    55  -8.161  -0.123  -7.976  -3.782  -9.080         -3.310  1.812 -4.113 -1.600 
+     D   141   139 2   142     5     0     0    35    53  -4.959  -0.803  -4.221  -2.596  -2.508         
+    IL   142   142 3   142     5     1     1    36    55  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   42 ]     39     62 u a - -
+    MP   143   142 3   147     6     2     2    35    54  -9.641  -9.580  -0.015  -8.357  -8.636  -9.031 -2.621 -2.655 -2.772  1.527 -2.521 -3.613  1.500 -2.949 -0.990  1.268 -3.362 -0.938  2.255 -2.911 -0.459 -1.884 
+    ML   144   142 3   147     6     1     1    34    52  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   145   142 3   147     6     1     1    34    52  -7.827  -6.556  -0.684  -6.535  -1.668  -4.748  0.317  0.226 -0.785  0.006 
+     D   146   142 3   147     6     0     0    31    50  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   147   147 5   147     6     1     1    35    53  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   148   148 6   148     5     1     1    34    53  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   43 ]     40     61 g c - -
+    MP   149   148 6   153     6     2     2    33    52  -9.707  -9.647  -0.014  -8.423  -8.703  -9.098 -1.908 -1.999 -2.104  1.597 -2.114 -2.919  1.086 -1.140 -2.163  1.605 -1.266  0.516  1.154 -1.467  0.258 -1.354 
+    ML   150   148 6   153     6     1     1    32    50  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   151   148 6   153     6     1     1    32    50  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   152   148 6   153     6     0     0    29    48  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   153   153 5   153     6     1     1    33    51  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   154   154 6   154     5     1     1    32    51  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   44 ]     41     60 C G - -
+    MP   155   154 6   159     6     2     2    31    50  -9.707  -9.647  -0.014  -8.423  -8.703  -9.098 -4.993 -5.022 -4.745 -1.224 -3.475 -5.199  3.381 -4.260 -4.766 -1.092 -1.292 -3.046  0.114 -5.076  1.411 -3.612 
+    ML   156   154 6   159     6     1     1    30    48  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   157   154 6   159     6     1     1    30    48  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   158   154 6   159     6     0     0    27    46  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   159   159 5   159     6     1     1    31    49  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   160   160 6   160     5     1     1    30    49  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   45 ]     42     59 C G - -
+    MP   161   160 6   165     6     2     2    29    48  -9.707  -9.647  -0.014  -8.423  -8.703  -9.098 -4.084 -4.030 -4.076 -0.245 -3.156 -1.640  3.227 -3.806 -4.050  0.350 -4.517 -1.972  1.164 -4.288  0.079 -2.933 
+    ML   162   160 6   165     6     1     1    28    46  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   163   160 6   165     6     1     1    28    46  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   164   160 6   165     6     0     0    25    44  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   165   165 5   165     6     1     1    29    47  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   166   166 6   166     5     1     1    28    47  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   46 ]     43     58 g c - -
+    MP   167   166 6   171     6     2     2    27    46  -9.707  -5.150  -0.054  -8.423  -8.703  -9.098 -2.640 -2.486 -1.078  0.782 -2.760 -2.132  2.030 -3.084 -2.872  2.342 -3.393 -0.324  0.719 -2.860 -0.426 -1.921 
+    ML   168   166 6   171     6     1     1    26    44  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   169   166 6   171     6     1     1    25    44  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   170   166 6   171     6     0     0    23    42  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   171   171 5   171     6     1     1    27    45  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   172   172 6   172     5     1     1    26    45  -2.722  -0.385  -6.234  -4.401  -5.507          0.000  0.000  0.000  0.000 
+                                             [ MATP   47 ]     44     56 g c - -
+    MP   173   172 6   177     6     2     2    25    44  -9.707  -9.647  -0.058  -8.423  -4.960  -9.098 -2.977 -2.435 -3.047  1.203 -3.376 -0.015  0.417 -1.252 -3.230  2.742 -3.675  0.467  0.220 -1.459 -1.265 -2.181 
+    ML   174   172 6   177     6     1     1    24    42  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   175   172 6   177     6     1     1    24    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   176   172 6   177     6     0     0    21    40  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   177   177 5   177     6     1     1    25    43  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   178   178 6   178     5     1     1    24    43  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   48 ]     45     55 G C - -
+    MP   179   178 6   183     4     2     2    23    42  -1.949  -9.203  -0.475  -5.656                 -4.672 -3.183 -4.580  0.883 -5.462 -4.894  0.191 -5.121 -4.650  3.496 -4.935 -0.841 -0.920 -4.352 -2.641 -3.511 
+    ML   180   178 6   183     4     1     1    22    41  -2.408  -4.532  -1.293  -1.473                  0.368 -0.385 -0.191  0.094 
+    MR   181   178 6   183     4     1     1    22    40  -5.215 -13.642  -0.167  -3.598                 -0.239  0.714 -0.957 -0.004 
+     D   182   178 6   183     4     0     0    20    39 -12.737 -14.007  -2.036  -0.404                 
+    IL   183   183 5   183     4     1     1    22    40  -4.356  -5.859  -0.183  -4.238                  0.000  0.000  0.000  0.000 
+    IR   184   184 6   184     3     1     1    23    41  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
+                                             [ MATR   49 ]      -     54 - G - -
+    MR   185   184 6   187     5     1     1    21    39  -8.161  -0.019  -7.976  -8.188  -9.080         -0.683 -1.429  1.293 -0.848 
+     D   186   184 6   187     5     0     0    20    38  -5.352  -0.707  -2.978  -4.409  -2.404         
+    IR   187   187 3   187     5     1     1    21    40  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   50 ]     47     53 c g - -
+    MP   188   187 3   192     6     2     2    20    38  -9.707  -9.647  -0.014  -8.423  -8.703  -9.098 -1.826 -1.039 -1.040  0.872 -1.994 -2.872  2.098 -1.257 -2.086  1.224 -1.184 -0.695  1.063 -2.162  0.561 -1.282 
+    ML   189   187 3   192     6     1     1    20    39  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
+    MR   190   187 3   192     6     1     1    20    38  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
+     D   191   187 3   192     6     0     0    18    37  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
+    IL   192   192 5   192     6     1     1    20    38  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
+    IR   193   193 6   193     5     1     1    19    38  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
+                                             [ MATP   51 ]     48     52 g c - -
+    MP   194   193 6   198     4     2     2    18    36  -8.182  -8.389  -0.022  -6.803                 -4.155 -2.941 -4.207  1.545 -5.090 -5.040 -0.585 -0.835 -4.210  2.419 -4.596  2.380 -0.835 -4.324 -2.509 -3.079 
+    ML   195   193 6   198     4     1     1    19    38  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
+    MR   196   193 6   198     4     1     1    19    38  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
+     D   197   193 6   198     4     0     0    18    37  -4.568  -4.250  -2.265  -0.520                 
+    IL   198   198 5   198     4     1     1    21    39  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
+    IR   199   199 6   199     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   52 ]     49      - U - - -
+    ML   200   199 6   202     3     1     1    14    32  -9.137  -0.009  -7.791                         -2.478 -1.076 -3.232  1.696 
+     D   201   199 6   202     3     0     0    15    33  -6.174  -1.687  -0.566                         
+    IL   202   202 3   202     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   53 ]     50      - G - - -
+    ML   203   202 3   205     3     1     1    12    31  -9.137  -0.009  -7.791                         -0.976 -1.947  1.590 -2.166 
+     D   204   202 3   205     3     0     0    13    32  -6.174  -1.687  -0.566                         
+    IL   205   205 3   205     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
+                                             [ MATL   54 ]     51      - G - - -
+    ML   206   205 3   208     2     1     1     1     1       *   0.000                                 -1.130 -3.575  1.740 -3.067 
+     D   207   205 3   208     2     0     0     0     0       *   0.000                                 
+    IL   208   208 3   208     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
+                                             [ END    55 ]      -      - - - - -
+     E   209   208 3    -1     0     0     0     0     0                                                 
+//
+HMMER3/f [i1.1 | October 2013]
+NAME  Hammerhead_II
+ACC   RF02276
+LENG  67
+MAXL  149
+ALPH  RNA
+RF    no
+MM    no
+CONS  yes
+CS    yes
+MAP   yes
+DATE  Thu Feb 20 19:56:18 2014
+COM   [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED
+COM   [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM
+NSEQ  24
+EFFN  13.543945
+CKSUM 4291876430
+STATS LOCAL MSV       -7.8588  0.71896
+STATS LOCAL VITERBI   -8.8049  0.71896
+STATS LOCAL FORWARD   -3.3776  0.71896
+HMM          A        C        G        U   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.53648  1.27419  1.10332  1.75193
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  0.00000        *
+      1   0.51779  2.14969  1.95783  1.92087      1 A - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+      2   1.23372  2.86506  1.07416  1.17045      2 g - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+      3   4.58369  1.39888  0.35324  3.20648      3 G - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+      4   5.05323  0.02311  5.39549  4.42941      4 C - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+      5   4.64450  5.75634  0.01873  5.15426      5 G - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+      6   0.01670  5.42928  5.02297  5.18612      6 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+      7   0.01670  5.42928  5.02297  5.18612      7 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+      8   0.06526  4.95123  3.08341  4.57572      8 A - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+      9   4.64986  0.06387  4.55537  3.17480      9 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     10   1.93989  1.11484  0.77433  2.69858     10 g - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     11   2.73084  0.81634  0.90276  2.43792     11 c - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     12   2.19942  0.76308  1.90694  1.29328     12 c - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     13   3.97621  0.26249  1.86614  2.85791     13 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     14   2.78999  0.58298  1.64387  1.67604     14 C - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     15   1.37514  1.10748  1.84047  1.35455     15 c - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.05454  4.90265  3.08669  1.46634  0.26236  1.09861  0.40547
+     16   1.60089  1.13974  1.10872  1.90784     16 g - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.01556  4.86368  4.86368  1.46634  0.26236  2.09765  0.13096
+     17   1.28466  1.02177  2.03221  1.45992     17 c - - _
+          1.38629  1.38629  1.38629  1.38629
+          1.46510  0.95745  0.95432  1.64920  0.21345  2.09765  0.13096
+     18   1.71626  1.62868  1.10754  1.22518     27 g - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.02512  4.38990  4.38990  1.46634  0.26236  0.61583  0.77695
+     19   1.51923  1.27163  1.42697  1.34434     28 c - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.01828  4.70439  4.70439  1.46634  0.26236  0.07633  2.61064
+     20   1.52758  2.36346  0.82956  1.37593     29 g - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     21   1.67246  1.85807  0.62873  2.09580     30 G - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     22   3.12803  1.70239  0.28772  3.73061     31 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     23   1.46381  1.79778  0.74751  2.04456     32 g - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     24   2.66467  1.15470  0.69905  2.13564     33 g - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.08752  2.57208  4.90265  0.18428  1.78203  1.09861  0.40547
+     25   2.94396  0.90215  1.07861  1.60157     35 c - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     26   3.47485  4.67916  0.11268  2.71338     36 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     27   4.68250  2.48451  4.66528  0.10763     37 U - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     28   4.44634  0.08887  4.90503  2.71953     38 C - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.09845  4.90265  2.44952  1.46634  0.26236  1.09861  0.40547
+     29   1.52746  1.80501  1.58369  0.88377     39 u - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.01626  4.82046  4.82046  1.46634  0.26236  0.15875  1.91873
+     30   1.41197  1.88327  1.01240  1.42338     40 g - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     31   4.49367  0.31616  3.16684  1.52444     41 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     32   3.46231  0.32484  2.68143  1.72860     42 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     33   2.05061  1.14113  0.83784  2.12659     43 g - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     34   1.93808  1.73588  0.52116  2.45408     44 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.06920  4.90265  2.82286  1.46634  0.26236  1.09861  0.40547
+     35   2.22599  2.67341  0.23152  3.51674     45 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.34344  1.26287  4.84924  0.05451  2.93659  0.22307  1.60972
+     36   1.74499  1.01522  1.48775  1.43906     47 c - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     37   1.68828  2.76886  0.31372  3.83009     48 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     38   3.79604  2.19895  4.31136  0.15876     49 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     39   2.22541  2.83492  0.22371  3.38997     50 G - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     40   2.25526  4.55266  0.13981  4.19352     51 G - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     41   4.06878  1.16374  3.87401  0.43107     52 U - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     42   1.96744  1.59865  0.71740  1.77196     53 g - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     43   2.05847  2.54076  0.39109  2.14365     54 G - - -
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     44   3.57381  0.26288  2.59975  2.04929     55 C - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     45   3.03472  0.48166  2.74566  1.30952     56 C - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.06395  2.90910  4.90265  0.25318  1.49756  1.09861  0.40547
+     46   2.48566  0.89872  0.99191  1.97494     58 c - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     47   2.13617  2.43801  0.28287  3.19563     59 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     48   3.31779  4.38460  0.06727  4.11340     60 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     49   1.85426  1.37282  1.50755  0.99808     61 u - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     50   0.88929  1.78542  1.68621  1.44347     62 a - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     51   5.05323  0.02311  5.39549  4.42941     63 C - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     52   4.78480  4.48556  5.35375  0.02466     64 U - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     53   4.64450  5.75634  0.01873  5.15426     65 G - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     54   0.01670  5.42928  5.02297  5.18612     66 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     55   3.60942  1.24185  4.20502  0.40173     67 U - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     56   4.64450  5.75634  0.01873  5.15426     68 G - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     57   0.01670  5.42928  5.02297  5.18612     69 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.35908  1.22331  4.90265  0.51588  0.90876  1.09861  0.40547
+     58   3.52173  4.67249  0.05344  4.33237     72 G - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     59   3.70014  0.13807  3.35799  2.66739     73 C - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     60   0.01670  5.42928  5.02297  5.18612     74 A - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     61   2.96959  5.02019  0.07051  4.59033     75 G - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     62   1.71038  0.26874  4.29103  3.19012     76 C - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     63   2.32511  0.45172  2.74721  1.60152     77 C - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     64   0.84725  1.54111  1.47935  2.04422     78 a - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     65   0.32766  2.21587  2.36388  2.57341     79 A - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     66   0.64240  2.02512  1.25557  2.86334     80 A - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.01497  4.90265  4.90265  1.46634  0.26236  1.09861  0.40547
+     67   1.22218  1.51879  1.04805  1.99647     81 g - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.00751  4.89520        *  1.46634  0.26236  0.00000        *
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/hammerheadClan.hmm	Fri Oct 20 04:31:43 2017 -0400
@@ -0,0 +1,362 @@
+HMMER3/f [i1.1 | October 2013]
+NAME  Hammerhead_1
+ACC   RF00163
+LENG  46
+MAXL  1024
+ALPH  RNA
+RF    no
+MM    no
+CONS  yes
+CS    yes
+MAP   yes
+DATE  Mon Apr  7 16:26:36 2014
+COM   [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED
+NSEQ  29
+EFFN  29.000000
+CKSUM 822789652
+STATS LOCAL MSV       -7.2434  0.72420
+STATS LOCAL VITERBI   -8.0368  0.72420
+STATS LOCAL FORWARD   -3.9333  0.72420
+HMM          A        C        G        U   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.23160  1.40725  1.36162  1.57448
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  0.00000        *
+      1   1.05150  0.79288  2.10623  2.57240      1 c - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+      2   3.57334  2.35748  2.81121  0.20194      2 U - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+      3   2.13788  0.94667  3.09051  0.80165      3 u - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.05509  5.74300  2.98777  1.46634  0.26236  1.09861  0.40547
+      4   4.19719  0.98552  3.95023  0.52346      4 U - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00675  5.69466  5.69466  1.46634  0.26236  0.11973  2.18181
+      5   1.10187  0.99383  2.32825  1.60881      5 c - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+      6   1.81855  1.02498  1.03243  2.09726      6 c - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+      7   2.32168  0.15763  4.96854  3.19967      7 C - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+      8   2.51100  2.68275  4.56816  0.17428      8 U - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+      9   5.32753  6.52376  0.00925  5.84922      9 G - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     10   0.03510  5.34451  5.30287  3.69926     10 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     11   0.78913  1.06413  2.18044  2.43336     11 a - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     12   5.05359  3.99671  0.02921  5.51634     12 G - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     13   0.12729  3.90906  4.06325  2.49775     13 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     14   3.40084  5.71124  0.04079  5.70842     14 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     15   0.87362  3.64062  4.79136  0.60144     15 U - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     16   5.35572  0.12161  3.01897  2.79792     16 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     17   5.34129  0.65767  0.83205  3.17017     17 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.03409  5.74300  3.49639  1.46634  0.26236  1.09861  0.40547
+     18   0.83459  0.84384  3.21993  2.34406     18 a - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00661  5.71553  5.71553  1.46634  0.26236  0.19187  1.74534
+     19   0.08607  3.46116  3.24250  4.42186     19 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.56145  5.74300  0.85234  1.46634  0.26236  1.09861  0.40547
+     20   2.99374  2.42928  0.28484  2.21031     20 G - - _
+          1.38629  1.38629  1.38629  1.38629
+          1.25738  0.34243  5.19273  4.16835  0.01560  0.01492  4.21243
+     21   0.60942  0.95344  3.06389  3.72086     92 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     22   0.04450  3.51265  5.05530  4.91560     93 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     23   4.46679  0.72857  5.18579  0.69251     94 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     24   0.08550  4.58105  3.17510  3.50937     95 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     25   0.80650  5.39706  0.61064  5.10817     96 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     26   2.41270  5.40317  0.10546  5.11395     97 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     27   0.69505  5.01869  2.59499  0.86824     98 a - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     28   5.68031  0.08639  2.98559  3.54589     99 C - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     29   4.83346  5.71925  0.08180  2.69861    100 G - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     30   0.06141  4.75374  3.61727  3.72591    101 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.01860  5.74300  4.18519  1.46634  0.26236  1.09861  0.40547
+     31   0.07025  4.62943  3.62627  3.45889    102 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.05578  2.97569  5.73092  1.11586  0.39695  0.35150  1.21616
+     32   0.04794  5.74377  3.24245  5.39598    106 A - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     33   5.25081  0.10882  3.62090  2.64356    107 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     34   2.18897  3.02831  0.71320  1.05126    108 g - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     35   2.48896  0.39844  2.09457  2.09955    109 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.53231  0.89270  5.74300  0.01558  4.16960  1.09861  0.40547
+     36   2.03556  2.23109  0.41757  2.26975    111 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     37   1.03674  0.72936  3.18879  2.10413    112 c - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     38   3.34836  5.30979  0.11626  2.66400    113 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     39   5.58709  4.48087  5.55181  0.01913    114 U - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     40   4.82532  0.08164  3.39148  3.30471    115 C - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.11871  2.21890  5.74300  1.10654  0.40153  1.09861  0.40547
+     41   2.32997  0.94969  0.94687  2.05660    119 g - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     42   1.70930  2.45034  0.94884  1.06260    120 g - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     43   0.77268  4.06315  0.76144  2.91805    121 g - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     44   0.93066  2.41528  1.00913  1.88500    122 a - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     45   0.10070  5.28008  2.47777  4.99427    123 A - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.00643  5.74300  5.74300  1.46634  0.26236  1.09861  0.40547
+     46   2.80174  2.03993  0.87783  0.93249    124 g - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.00322  5.73979        *  1.46634  0.26236  0.00000        *
+//
+HMMER3/f [i1.1 | October 2013]
+NAME  Hammerhead_3
+ACC   RF00008
+LENG  58
+MAXL  394
+ALPH  RNA
+RF    no
+MM    no
+CONS  yes
+CS    yes
+MAP   yes
+DATE  Wed Apr  2 10:16:51 2014
+COM   [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED
+NSEQ  82
+EFFN  37.363953
+CKSUM 3010811993
+STATS LOCAL MSV       -7.6645  0.71923
+STATS LOCAL VITERBI   -8.4297  0.71923
+STATS LOCAL FORWARD   -4.3750  0.71923
+HMM          A        C        G        U   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.32643  1.47009  1.25645  1.51409
+          1.38629  1.38629  1.38629  1.38629
+          0.43619  6.09683  1.04625  1.46634  0.26236  0.00000        *
+      1   1.82145  0.86676  1.49265  1.64443      1 c - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.00694  5.66758  5.66758  1.46634  0.26236  0.27423  1.42778
+      2   0.83552  1.66404  2.70673  1.17046      2 a - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00491  6.01256  6.01256  1.46634  0.26236  3.66156  0.02603
+      3   1.15542  1.18053  2.06288  1.38280      3 a - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00491  6.01256  6.01256  1.46634  0.26236  3.66156  0.02603
+      4   1.31675  0.78057  1.36254  4.02643      4 c - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00491  6.01256  6.01256  1.46634  0.26236  3.66156  0.02603
+      5   0.28665  2.12273  3.57662  2.28720      5 A - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00491  6.01256  6.01256  1.46634  0.26236  3.66156  0.02603
+      6   3.33415  5.75054  0.04308  5.70299      6 G - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00491  6.01256  6.01256  1.46634  0.26236  3.66156  0.02603
+      7   6.47594  6.12952  6.71375  0.00494      7 U - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00491  6.01256  6.01256  1.46634  0.26236  3.66156  0.02603
+      8   2.77356  0.09503  5.28751  3.76519      8 C - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.15169  3.77726  2.13826  0.20170  1.70013  0.05275  2.96842
+      9   2.86405  4.59505  0.76223  0.76306     10 g - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00487  6.01969  6.01969  1.46634  0.26236  0.04070  3.22185
+     10   1.33215  2.44594  0.47387  3.61727     11 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     11   2.24834  2.05040  0.60684  1.51107     12 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     12   0.96873  4.00048  0.62366  2.71586     13 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     13   2.66774  0.37852  1.60250  3.11625     14 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     14   1.87279  1.33706  1.95959  0.81470     15 u - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     15   1.34029  3.23842  4.51723  0.37384     16 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.52776  6.12818  0.89675  1.46634  0.26236  1.09861  0.40547
+     16   3.03248  5.58471  0.05975  5.10767     17 G - - _
+          1.38629  1.38629  1.38629  1.38629
+          1.40408  0.31420  3.72837  0.01002  4.60845  5.24207  0.00530
+     17   0.62567  3.34691  1.33089  1.79781     19 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00752  5.58721  5.58721  1.46634  0.26236  5.27100  0.00515
+     18   3.09604  2.64198  0.42607  1.46759     20 G - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00752  5.58721  5.58721  1.46634  0.26236  5.27100  0.00515
+     19   1.78991  1.89610  1.98614  0.60578     21 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          1.15974  0.38172  5.58721  0.01094  4.52109  0.01033  4.57785
+     20   0.81364  1.80600  1.35329  2.00947     23 a - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     21   3.55946  1.64658  0.34876  2.61356     24 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.02120  6.12818  3.97403  1.46634  0.26236  1.09861  0.40547
+     22   2.79448  0.60750  3.83600  0.98735     25 C - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00444  6.11142  6.11142  1.46634  0.26236  0.20864  1.66965
+     23   1.54768  1.19553  1.99559  1.05331     26 u - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     24   3.77909  0.53822  2.37996  1.20125     27 C - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     25   0.67949  0.94447  3.94641  2.46610     28 A - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     26   6.06154  0.00849  6.37611  5.42148     29 C - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     27   6.32646  5.85171  6.98255  0.00561     30 U - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     28   5.40707  4.43524  0.01928  5.89166     31 G - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     29   0.00581  6.55643  6.07425  6.18037     32 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     30   4.91034  1.25619  5.49528  0.35128     33 U - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     31   5.54973  6.76018  0.00738  6.07429     34 G - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     32   0.00581  6.55643  6.07425  6.18037     35 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     33   4.04422  6.03584  0.02247  6.07351     36 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     34   4.01080  1.47735  1.32704  0.71666     37 u - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     35   5.61791  0.10835  5.54724  2.35224     38 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     36   3.53341  1.16762  1.64995  0.76008     39 u - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     37   2.03553  1.14366  0.89607  1.94793     40 g - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     38   1.57384  4.50180  5.08139  0.25431     41 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.29218  6.12818  1.38157  1.46634  0.26236  1.09861  0.40547
+     39   3.09844  5.93445  0.05360  5.42125     42 G - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00582  5.84183  5.84183  1.46634  0.26236  4.76382  0.00857
+     40   0.57139  2.99642  0.98909  4.31405     43 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.49939  1.05274  3.12088  3.14323  0.04410  4.76382  0.00857
+     41   1.04364  1.08329  1.31484  3.19837     68 a - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00608  5.79974  5.79974  1.46634  0.26236  2.04285  0.13887
+     42   0.02310  5.57631  5.42805  4.22311     69 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00579  5.84716  5.84716  1.46634  0.26236  0.12551  2.13749
+     43   1.40381  1.25554  2.81848  0.89228     70 u - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00448  6.10255  6.10255  1.46634  0.26236  2.68142  0.07092
+     44   0.38958  5.50418  1.15768  5.43206     71 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00448  6.10255  6.10255  1.46634  0.26236  0.14726  1.98827
+     45   0.78318  1.63842  1.13792  3.56564     72 a - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     46   2.67107  5.67654  0.08033  5.38484     73 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     47   0.74767  1.36240  1.39759  3.75960     74 a - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     48   6.09436  0.02609  5.94200  3.86953     75 C - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     49   4.27804  6.30999  0.02714  4.50238     76 G - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     50   0.01709  6.15625  4.41390  5.90874     77 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00437  6.12818  6.12818  1.46634  0.26236  1.09861  0.40547
+     51   0.00581  6.55643  6.07425  6.18037     78 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00451  6.09683  6.09683  1.46634  0.26236  1.09861  0.40547
+     52   0.01022  6.29796  5.35703  5.62188     79 A - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.00451  6.09683  6.09683  1.46634  0.26236  1.09861  0.40547
+     53   4.82883  0.06808  5.14616  2.95661     80 C - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.00451  6.09683  6.09683  1.46634  0.26236  1.09861  0.40547
+     54   2.05206  3.60982  2.04635  0.33510     81 U - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.00451  6.09683  6.09683  1.46634  0.26236  1.09861  0.40547
+     55   4.17624  1.44976  0.70955  1.35420     82 g - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.02546  6.09683  3.77729  1.46634  0.26236  1.09861  0.40547
+     56   1.57713  2.34364  1.12299  0.98846     83 u - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.00461  6.07598  6.07598  1.46634  0.26236  2.49906  0.08573
+     57   0.91090  3.50943  2.33812  0.75202     84 u - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.36397  6.07598  1.19472  1.46634  0.26236  2.49906  0.08573
+     58   2.20011  1.23892  0.74080  2.09739     85 g - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.00330  5.71531        *  1.46634  0.26236  0.00000        *
+//
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input.cmcompare	Fri Oct 20 04:31:43 2017 -0400
@@ -0,0 +1,1 @@
+Hammerhead_HH10   Hammerhead_II     -2.968     -0.922 GCGCCCCCGCGGGCGC ((((((....)))))) ((((((....)))))) [26,27,28,29,30,31,32,33,34,35,36] [25,26,27,28,29,30,31,32,33,34,35,36,37,38,39]
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input.hmmcompare	Fri Oct 20 04:31:43 2017 -0400
@@ -0,0 +1,1 @@
+Hammerhead_1   Hammerhead_3      6.168      5.244 GUCCCAGUAAUAGGAC [17,18,19,20,21,22,23,23,24,25,26,27,28] [36,37,38,39,40,41,42,43,44,45,46,47,48]
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/tRNA.hmm	Fri Oct 20 04:31:43 2017 -0400
@@ -0,0 +1,238 @@
+HMMER3/f [i1.1 | October 2013]
+NAME  tRNA
+ACC   RF00005
+LENG  71
+MAXL  253
+ALPH  RNA
+RF    no
+MM    no
+CONS  yes
+CS    yes
+MAP   yes
+DATE  Tue Mar 18 15:30:04 2014
+COM   [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED
+NSEQ  954
+EFFN  559.992432
+CKSUM 1403477983
+STATS LOCAL MSV       -9.0828  0.73401
+STATS LOCAL VITERBI   -9.6771  0.73401
+STATS LOCAL FORWARD   -2.6167  0.73401
+HMM          A        C        G        U   
+            m->m     m->i     m->d     i->m     i->i     d->m     d->d
+  COMPO   1.34376  1.54626  1.34829  1.32272
+          1.38629  1.38629  1.38629  1.38629
+          0.01089  9.16555  4.53501  1.46634  0.26236  0.00000        *
+      1   1.77738  2.48413  0.40741  2.49918      1 G - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.15487  9.15487  1.46634  0.26236  0.01931  3.95671
+      2   1.70723  1.28195  0.88318  2.05828      2 g - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+      3   1.16771  1.50075  1.31207  1.62608      3 a - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+      4   1.45971  1.75541  0.94997  1.56969      4 g - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+      5   0.99705  1.64839  1.41564  1.63013      5 a - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+      6   1.62605  1.74147  1.35530  0.99381      6 u - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+      7   0.91594  3.16623  1.01357  1.63590      7 a - - (
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+      8   2.66516  4.88171  3.01992  0.13465      8 U - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.03342  3.68933  4.84310  0.00835  4.78975  1.09861  0.40547
+      9   0.58939  3.25595  1.00776  3.17602     10 A - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.02924  3.55044  9.15774  0.00733  4.92001  0.02619  3.65549
+     10   2.41169  2.38509  0.28093  2.76190     12 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     11   3.26023  0.54810  2.54667  1.18668     13 C - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     12   2.15431  1.47701  1.82444  0.70443     14 u - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     13   1.60140  1.50019  1.39889  1.11344     15 u - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00210  9.16555  6.21942  1.46634  0.26236  1.09861  0.40547
+     14   0.13193  5.26257  3.22617  2.54198     16 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00916  9.16366  4.70900  1.46634  0.26236  3.04606  0.04871
+     15   0.89567  3.14554  0.79030  2.35479     17 g - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.17992  9.15472  1.80452  1.46634  0.26236  4.66400  0.00947
+     16   1.81826  1.59646  3.52093  0.50169     18 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.48849  1.02501  3.58788  0.29781  1.35652  0.17366  1.83622
+     17   2.18421  3.21803  0.23359  2.88757     22 G - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.01313  9.11400  4.34765  1.46634  0.26236  6.18099  0.00207
+     18   2.72437  3.05446  0.23471  2.33861     23 G - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.16612  9.10109  1.87766  1.46634  0.26236  6.39686  0.00167
+     19   2.54081  1.97700  3.62026  0.27980     24 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.84547  0.56328  6.64183  0.37133  1.17060  0.01129  4.48982
+     20   0.20389  3.95681  2.45766  2.52965     28 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16251  9.16251  1.46634  0.26236  0.06450  2.77317
+     21   0.67070  3.60549  1.12770  1.98271     29 A - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00101  9.16555  7.00724  1.46634  0.26236  1.09861  0.40547
+     22   0.74509  1.80409  1.36106  2.26054     30 a - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16475  9.16475  1.46634  0.26236  0.20786  1.67302
+     23   1.27379  2.51619  0.51274  3.20372     31 G - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     24   2.96340  0.43847  2.29770  1.59531     32 C - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.01002  9.16555  4.61878  1.46634  0.26236  1.09861  0.40547
+     25   0.88499  3.59117  0.81932  2.12876     33 g - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.02263  3.80472  9.15574  0.00946  4.66544  0.02098  3.87461
+     26   1.75309  1.15243  1.97170  0.98974     35 u - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00979  4.64168  9.16555  0.02155  3.84793  1.09861  0.40547
+     27   1.85437  0.99657  2.35852  0.96826     37 u - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     28   1.30168  2.18037  0.98968  1.41375     38 g - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00102  9.16555  6.99298  1.46634  0.26236  1.09861  0.40547
+     29   1.80997  1.88357  0.43335  3.32526     39 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00088  9.16474  7.15852  1.46634  0.26236  0.20520  1.68462
+     30   0.90900  1.72612  1.56959  1.55605     40 a - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16488  9.16488  1.46634  0.26236  0.23822  1.55130
+     31   3.65408  0.50544  4.76325  1.01518     41 C - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.01205  4.43341  9.16555  0.01752  4.05299  1.09861  0.40547
+     32   9.00018  3.83708  9.65323  0.02198     43 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     33   2.93223  1.86700  1.05683  0.81063     44 u - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     34   1.20540  1.40761  1.57657  1.39023     45 a - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     35   1.01944  1.69593  1.76006  1.25969     46 a - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     36   0.22981  5.66672  1.63533  4.96602     47 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     37   0.31894  1.97853  3.29279  2.32632     48 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     38   1.75705  1.68372  1.51619  0.86224     49 u - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     39   3.69794  0.50242  1.84119  1.55337     50 C - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     40   1.42184  0.98012  2.20563  1.29725     51 c - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     41   1.07286  2.55525  0.94794  1.64632     52 g - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.01512  4.62725  5.25418  0.02125  3.86212  1.09861  0.40547
+     42   1.07209  2.65235  1.14499  1.31306     54 a - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16042  9.16042  1.46634  0.26236  0.03925  3.25747
+     43   0.80151  1.95751  2.49068  1.11692     55 a - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00354  9.16555  5.67532  1.46634  0.26236  1.09861  0.40547
+     44   1.18719  3.11026  0.79210  1.62231     56 g - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.35483  1.22280  5.44788  2.52888  0.08311  0.05920  2.85628
+     45   0.94160  3.32903  0.90358  1.77754     81 g - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.48754  0.95525  6.76795  0.05391  2.94730  0.04759  3.06879
+     46   2.80272  0.69545  2.93113  0.94890     85 c - - ,
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16451  9.16451  1.46634  0.26236  0.16775  1.86801
+     47   1.22469  2.17415  0.63431  2.77834     86 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     48   1.42620  1.32668  1.62225  1.21413     87 u - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     49   1.18971  2.17674  0.87232  1.80607     88 g - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.01813  4.16800  5.99901  0.01345  4.31515  1.09861  0.40547
+     50   1.54892  3.64681  0.35215  2.84261     90 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.05447  9.16317  2.93921  1.46634  0.26236  3.24748  0.03965
+     51   2.91904  3.69075  0.10557  3.85142     91 G - - <
+          1.38629  1.38629  1.38629  1.38629
+          0.01926  9.10892  3.96541  1.46634  0.26236  0.47025  0.98042
+     52   2.58713  3.30063  4.12158  0.13733     92 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.01335  4.33098  9.12642  0.01645  4.11544  0.02336  3.76823
+     53   2.73380  3.55136  3.10063  0.14929     94 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00117  9.16487  6.84764  1.46634  0.26236  0.23519  1.56264
+     54   1.91909  0.28976  3.93473  2.46202     95 C - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.00089  9.16459  7.15486  1.46634  0.26236  2.49712  0.08591
+     55   0.86370  3.18439  0.73315  2.87167     96 g - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.02538  3.85434  5.55452  0.00986  4.62431  0.11370  2.23049
+     56   0.10751  3.36842  3.61643  3.20375     98 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.02690  9.16179  3.63288  1.46634  0.26236  3.66212  0.02601
+     57   0.67201  2.24039  1.88732  1.46350     99 A - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.10924  3.26538  2.72866  0.25713  1.48400  3.15055  0.04377
+     58   3.03220  2.08118  4.58750  0.20232    102 U - - _
+          1.38629  1.38629  1.38629  1.38629
+          0.02872  9.06899  3.56869  1.46634  0.26236  0.44699  1.02041
+     59   3.62885  0.09251  4.76246  2.93245    103 C - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00022  9.10519  9.10519  1.46634  0.26236  0.04490  3.12561
+     60   2.82384  0.36562  3.60560  1.51557    104 C - - >
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16317  9.16317  1.46634  0.26236  0.08093  2.55433
+     61   1.98165  0.93537  2.03138  1.08305    105 c - - >
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+     62   1.41052  1.88381  1.22158  1.17374    106 u - - >
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+     63   2.92352  0.85192  2.12328  0.91624    108 c - - >
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+          0.01067  4.63067  7.04730  0.02132  3.85875  1.09861  0.40547
+     64   1.64302  1.08197  3.15743  0.85533    110 u - - )
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+          0.00021  9.16479  9.16479  1.46634  0.26236  0.21550  1.64060
+     65   1.19333  1.55287  1.48082  1.35596    111 a - - )
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+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
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+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     67   1.68524  1.08580  1.59640  1.29337    113 c - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     68   1.70095  1.44882  1.44666  1.05760    114 u - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     69   2.07909  0.95836  1.28069  1.54370    115 c - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.00021  9.16555  9.16555  1.46634  0.26236  1.09861  0.40547
+     70   2.48394  0.54896  2.55295  1.34252    116 C - - )
+          1.38629  1.38629  1.38629  1.38629
+          0.02417  9.16555  3.73919  1.46634  0.26236  1.09861  0.40547
+     71   0.68084  2.78597  1.26674  1.89452    118 A - - :
+          1.38629  1.38629  1.38629  1.38629
+          0.00011  9.14149        *  1.46634  0.26236  0.00000        *
+//
Binary file test-data/tRNA.pdf has changed