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annotate compalignp.xml @ 1:f3a318881b1b draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/compalignp/ commit 608bf2d6f11fe6dceaa0060f729bdbb66cfee867
author rnateam
date Sun, 12 Nov 2017 06:10:42 -0500
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1 <tool id="compalignp" name="Compalignp" version="1.0">
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2 <description>Fractional identities between alignments</description>
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3 <requirements>
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4 <requirement type="package" version="1.0">compalignp</requirement>
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5 </requirements>
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6 <command detect_errors="aggressive">
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7 <![CDATA[
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8 compalignp
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9 -t '$rna_alignment_target'
f3a318881b1b planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/compalignp/ commit 608bf2d6f11fe6dceaa0060f729bdbb66cfee867
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10 -r '$rna_alignment_reference'
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11 > $output
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12 ]]>
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13 </command>
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14 <inputs>
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15 <param format="clustal,stockholm" name="rna_alignment_target" type="data" label="Target RNA Alignment" help="(-t)" />
f3a318881b1b planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/compalignp/ commit 608bf2d6f11fe6dceaa0060f729bdbb66cfee867
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16 <param format="clustal,stockholm" name="rna_alignment_reference" type="data" label="Reference RNA Alignment" help="(-r)" />
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17 </inputs>
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18 <outputs>
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19 <data name="output" format="txt" />
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20 </outputs>
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21 <tests>
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22 <test>
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23 <param name="rna_alignment_target" value="eukaryotic-trnas_2.1.clustal"/>
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24 <param name="rna_alignment_reference" value="eukaryotic-trnas_2.1.clustal"/>
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25 <output name="output" file="eukaryotic-trnas_2.1.out"/>
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26 </test>
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27 </tests>
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28 <help>
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29 <![CDATA[
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30
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31 **compalignp**
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32
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33 > Paranoia version of squids compalign.
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35 Compute fractional "identity" between trusted alignment and test alignment
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36 Identity of the multiple sequence alignments is defined as
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37 the averaged identity over all N(N-1)/2 pairwise alignments.
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40 ]]>
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41 </help>
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42 <citations>
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43 <citation type="doi">10.1186/1748-7188-1-19</citation>
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44 </citations>
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45 </tool>