Mercurial > repos > rnateam > compalignp

comparison compalignp.xml @ 1:f3a318881b1b draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/compalignp/ commit 608bf2d6f11fe6dceaa0060f729bdbb66cfee867
author rnateam
date Sun, 12 Nov 2017 06:10:42 -0500
parents 7e55ac3bd458
children
comparison
equal deleted inserted replaced
0:7e55ac3bd458 1:f3a318881b1b
1 <tool id="compalignp" name="Compalignp" version="1.0"> 1 <tool id="compalignp" name="Compalignp" version="1.0">
2 <description>Fractional identities between alignments</description> 2 <description>Fractional identities between alignments</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.0">compalignp</requirement> 4 <requirement type="package" version="1.0">compalignp</requirement>
5 </requirements> 5 </requirements>
6 <stdio> 6 <command detect_errors="aggressive">
7 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" />
8 <exit_code range=":-1" level="fatal" description="Error occurred. Please check Tool Standard Error" />
9 </stdio>
10 <command>
11 <![CDATA[ 7 <![CDATA[
12 compalignp 8 compalignp
13 -t $rna_alignment_target 9 -t '$rna_alignment_target'
14 -r $rna_alignment_reference 10 -r '$rna_alignment_reference'
15 > $output 11 > $output
16 ]]> 12 ]]>
17 </command> 13 </command>
18 <inputs> 14 <inputs>
19 <param format="clustalw,stockholm" name="rna_alignment_target" type="data" label="Target RNA Alignment" help="(-t)" /> 15 <param format="clustal,stockholm" name="rna_alignment_target" type="data" label="Target RNA Alignment" help="(-t)" />
20 <param format="clustalw,stockholm" name="rna_alignment_reference" type="data" label="Reference RNA Alignment" help="(-r)" /> 16 <param format="clustal,stockholm" name="rna_alignment_reference" type="data" label="Reference RNA Alignment" help="(-r)" />
21 </inputs> 17 </inputs>
22 <outputs> 18 <outputs>
23 <data name="output" format="txt" /> 19 <data name="output" format="txt" />
24 </outputs> 20 </outputs>
25 <tests> 21 <tests>
29 <output name="output" file="eukaryotic-trnas_2.1.out"/> 25 <output name="output" file="eukaryotic-trnas_2.1.out"/>
30 </test> 26 </test>
31 </tests> 27 </tests>
32 <help> 28 <help>
33 <![CDATA[ 29 <![CDATA[
30
34 **compalignp** 31 **compalignp**
35 32
36 > Paranoia version of squids compalign. 33 > Paranoia version of squids compalign.
37 34
38 Compute fractional "identity" between trusted alignment and test alignment 35 Compute fractional "identity" between trusted alignment and test alignment
41 38
42 39
43 ]]> 40 ]]>
44 </help> 41 </help>
45 <citations> 42 <citations>
46 <citation type="doi">10.1186/1748-7188-1-19</citation> 43 <citation type="doi">10.1186/1748-7188-1-19</citation>
47 </citations> 44 </citations>
48 </tool> 45 </tool>