Mercurial > repos > rnateam > data_manager_sortmerna_database_downloader

comparison data_manager_conf.xml @ 1:30bb49887172 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_sortmerna_database_downloader commit 044a991b45c9135339daf138929887cd8e93a1bf
author rnateam
date Tue, 06 Jun 2017 13:40:27 -0400
parents 765f4ec851f0
children 7d2252852f96
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0:765f4ec851f0 1:30bb49887172
3 <data_manager tool_file="data_manager/data_manager_sortmerna_download.xml" id="data_manager_sortmerna_download" > 3 <data_manager tool_file="data_manager/data_manager_sortmerna_download.xml" id="data_manager_sortmerna_download" >
4 <data_table name="rRNA_databases"> <!-- Defines a Data Table to be modified. --> 4 <data_table name="rRNA_databases"> <!-- Defines a Data Table to be modified. -->
5 <output> <!-- Handle the output of the Data Manager Tool --> 5 <output> <!-- Handle the output of the Data Manager Tool -->
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> 6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> 7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
8 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
9 <column name="path" output_ref="out_file" > 8 <column name="path" output_ref="out_file" >
10 <move type="file"> 9 <move type="file">
11 <source>${path}</source> 10 <source>${path}</source>
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">rRNA_databases/${dbkey}</target> 11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">rRNA_databases/${name}</target>
13 </move> 12 </move>
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/rRNA_databases/${dbkey}</value_translation> 13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/rRNA_databases/${name}</value_translation>
15 <value_translation type="function">abspath</value_translation> 14 <value_translation type="function">abspath</value_translation>
16 </column> 15 </column>
17 </output> 16 </output>
18 </data_table> 17 </data_table>
19 </data_manager> 18 </data_manager>