Mercurial > repos > rnateam > graphclust_postprocessing
changeset 15:c7ca5d173482 draft
planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 6767a5ffb02052c844e9d862c79912f998f39d8e
| author | rnateam |
|---|---|
| date | Mon, 20 Nov 2017 04:50:48 -0500 |
| parents | 98ceca65a0b6 |
| children | 79df97a1bc0f |
| files | glob_report.xml test-data/1.cluster.top5.alirna.png test-data/1.cluster.top5.aln.png test-data/1.cluster.top5.result.aln_1.R2R.sto.pdf test-data/2.cluster.top5.alirna.png test-data/2.cluster.top5.aln.png test-data/RESULTS.zip |
| diffstat | 7 files changed, 22 insertions(+), 13 deletions(-) [+] |
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--- a/glob_report.xml Tue Jul 18 01:41:51 2017 -0400 +++ b/glob_report.xml Mon Nov 20 04:50:48 2017 -0500 @@ -1,14 +1,14 @@ -<tool id="glob_report" name="cluster_collection_report" version="0.2"> +<tool id="glob_report" name="cluster_collection_report" version="0.3" > <requirements> - <requirement type="package" version="0.3.1">graphclust-wrappers</requirement> + <requirement type="package" version="0.5.2">graphclust-wrappers</requirement> <requirement type="package" version='0.5'>perl-array-utils</requirement> <requirement type="package" version='0.18.1'>scikit-learn</requirement> <requirement type="package" version='1.8.10'>locarna</requirement> <requirement type="package" version='2.1'>rnaz</requirement> - <requirement type="package" version="1.1">infernal</requirement> + <requirement type="package" version="1.1.2">infernal</requirement> <requirement type="package" version='2.2.10'>viennarna</requirement> - <requirement type="package" version='1.3.23'>graphicsmagick</requirement> - <requirement type="package" version='0.3.1'>rscape</requirement> + <requirement type="package" version='1.3.26'>graphicsmagick</requirement> + <requirement type="package" version='0.6.1'>rscape</requirement> <requirement type="package" version='6.0'>unzip</requirement> </requirements> @@ -37,6 +37,8 @@ ln -f -s '$mods' ./MODEL/$mods.element_identifier && #end for #set $inputFilesTrees = $inputFilesTrees[:-1] + + 'glob_res.pl' ##'$inputFiles' $merge_cluster_ol @@ -72,6 +74,7 @@ && python '$__tool_directory__/evaluation.py' + #if $cdhit: && python '$__tool_directory__/addCdhitseqs.py' '$cdhit'
--- a/test-data/1.cluster.top5.result.aln_1.R2R.sto.pdf Tue Jul 18 01:41:51 2017 -0400 +++ b/test-data/1.cluster.top5.result.aln_1.R2R.sto.pdf Mon Nov 20 04:50:48 2017 -0500 @@ -71,6 +71,12 @@ 92.815958 30.658227 l S 72 w +81.834458 40.910727 m +99.909458 40.910727 l +99.909458 35.525727 l +81.834458 35.525727 l +h +f 1.44 w 88.927958 38.218227 m 92.815958 38.218227 l @@ -858,7 +864,7 @@ << /Font <</FH 5 0 R>> /ProcSet[/PDF/Text/ImageC]/XObject << >>/ExtGState<</GS0 10 0 R>>/Properties<</MC0<</Color[20224.0 -32768.0 -1.0]/Title(Layer 1)/Visible true/Preview true/Editable true/Printed true/Dimmed true>>>>>> endobj 8 0 obj -14532 +14624 endobj 1 0 obj << @@ -883,21 +889,21 @@ xref 0 11 0000000000 65535 f -0000015224 00000 n -0000015347 00000 n -0000015289 00000 n +0000015316 00000 n +0000015439 00000 n +0000015381 00000 n 0000000116 00000 n 0000000009 00000 n 0000000152 00000 n 0000000270 00000 n -0000015203 00000 n -0000014965 00000 n -0000014853 00000 n +0000015295 00000 n +0000015057 00000 n +0000014945 00000 n trailer << /Size 11 /Root 1 0 R >> startxref -15393 +15485 %%EOF