Mercurial > repos > rnateam > graphclust_preprocessing
changeset 9:0690d59881b9 draft
planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust commit 65d322f9ab2f24d65b307f3553589149a1d678d5
| author | rnateam |
|---|---|
| date | Thu, 01 Jun 2017 08:09:49 -0400 |
| parents | a04e93fdb40a |
| children | 16bcaef3dc1e |
| files | splitSHAPE.py |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/splitSHAPE.py Wed May 24 09:57:18 2017 -0400 +++ b/splitSHAPE.py Thu Jun 01 08:09:49 2017 -0400 @@ -36,7 +36,7 @@ lines = content.split('\n') for line in lines: if pattern.match(line): - line = line.replace('>','').strip() + line = line.replace('>','').split()[0] react_arr=[] react_dict[line] = react_arr continue @@ -47,7 +47,7 @@ chunks = [] for i in range(len(orig_id)): if not orig_id[i] in react_dict: - raise RuntimeError('Error key {} not found'.format(orig_id)) + raise RuntimeError('Error key {} {} not found'.format(i, orig_id[i])) react_val = react_dict[orig_id[i]] toWrite += '>' + str(seq_id[i]) + " " + seq_string[i] + "\n"