Mercurial > repos > rnateam > mafft

comparison test-data/mafft_custom_parttree.aln @ 15:bf28a8cff401 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
author bgruening
date Wed, 20 Mar 2024 07:34:52 +0000
parents
children
comparison
equal deleted inserted replaced
14:6f28e90db932 15:bf28a8cff401
1 > 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
2 MN-------------------GTE------GDNFYVPF----------------SNKTGL
3 -----------ARSPYEYPQY-----YLAEPWK--------------------Y------
4 ------------------SALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNL
5 AMANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIER
6 YIVICKPMGN-FRFGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSC
7 GPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE-----------
8 ------------------------------------------------------------
9 ------------------------------------------------------------
10 ---AAAAQQ------------------------------------ESASTQKAEKEVTRM
11 VVLMVIGFLVCWVPYASVAFYIFT-HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMN
12 KQFRNCMITTLC----C---GKNPLGD-DE--SGASTSKTEV------------------
13 ------------------------------------------------------------
14 ---SSVS-------TSPVSP-A----------
15 > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
16 MN-------------------GTE------GPNFYVPF----------------SNITGV
17 -----------VRSPFEQPQY-----YLAEPWQ--------------------F------
18 ------------------SMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNL
19 AVADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIER
20 YVVVCKPMSN-FRFGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSC
21 GIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE-----------
22 ------------------------------------------------------------
23 ------------------------------------------------------------
24 ---AAAQQQ------------------------------------ESATTQKAEKEVTRM
25 VIIMVIFFLICWLPYASVAMYIFT-HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMN
26 KQFRNCMLTSLC----C---GKNPLGD-DE--ASATASKTE-------------------
27 ------------------------------------------------------------
28 --------------TSQVAP-A----------
29 > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
30 MN-------------------GTE------GINFYVPM----------------SNKTGV
31 -----------VRSPFEYPQY-----YLAEPWK--------------------Y------
32 ------------------RLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNL
33 AVADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIER
34 YIVVCKPMGN-FRFSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSC
35 GPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE-----------
36 ------------------------------------------------------------
37 ------------------------------------------------------------
38 ---AAAQQQ------------------------------------ESATTQKAEKEVTRM
39 VILMVLGFMLAWTPYAVVAFWIFT-NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMN
40 KQFRNCMITTIC----C---GKNPFGD-EDVSSTVSQSKTEV------------------
41 ------------------------------------------------------------
42 ---SSVS-------SSQVSP-A----------
43 > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
44 MN-------------------GTE------GKNFYVPM----------------SNRTGL
45 -----------VRSPFEYPQY-----YLAEPWQ--------------------F------
46 ------------------KILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNL
47 AVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIER
48 YIVVCKPMGS-FKFSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSC
49 GPDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA-----------
50 ------------------------------------------------------------
51 ------------------------------------------------------------
52 ---AAAQQQ------------------------------------DSASTQKAEREVTKM
53 VILMVFGFLIAWTPYATVAAWIFF-NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLN
54 KQFRNCMLTTIF----C---GKNPLGD-DE-SSTVSTSKTEV------------------
55 ------------------------------------------------------------
56 ---SS------------VSP-A----------
57 > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
58 MN-------------------GTE------GNNFYVPL----------------SNRTGL
59 -----------VRSPFEYPQY-----YLAEPWQ--------------------F------
60 ------------------KLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNL
61 AVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIER
62 YIVVCKPMGS-FKFSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSC
63 GPDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA-----------
64 ------------------------------------------------------------
65 ------------------------------------------------------------
66 ---AAAQQQ------------------------------------DSASTQKAEREVTKM
67 VILMVLGFLVAWTPYATVAAWIFF-NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLN
68 KQFRSCMLTTLF----C---GKNPLGD-EE-SSTVSTSKTEV------------------
69 ------------------------------------------------------------
70 ---SS------------VSP-A----------
71 > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
72 MK-------------------QVPE----FHEDFYIPIPL------------DINNLSAY
73 -------------SPFLVPQD-----HLGNQGI--------------------F------
74 ------------------MAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNL
75 SIANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFER
76 WLVICKPLGN-FTFKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSC
77 GPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL-----------
78 ------------------------------------------------------------
79 ------------------------------------------------------------
80 ---AAKAQA------------------------------------DSASTQKAEREVTKM
81 VVVMVLGFLVCWAPYASFSLWIVS-HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMN
82 KQFRSCMM-KMV----C---GKN-IEE-DE--ASTSSQVTQV------------------
83 ------------------------------------------------------------
84 ---SS------------VAPEK----------
85 > 7== M13299 1 human BCP <>[Science232(4747),193-202'86]
86 MR-------------------KMS------EEEFYL-----------------FKNISSV
87 -------------GPWDGPQY-----HIAPVWA--------------------F------
88 ------------------YLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNV
89 SFGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFER
90 YIVICKPFGN-FRFSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSC
91 GPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA-----------
92 ------------------------------------------------------------
93 ------------------------------------------------------------
94 ---VAAQQQ------------------------------------ESATTQKAEREVSRM
95 VVVMVGSFCVCYVPYAAFAMYMVN-NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMN
96 KQFQACIM-KMV----C---GKA-MTD-ES--DTCSSQKTEV------------------
97 ------------------------------------------------------------
98 ---STVS-------STQVGP-N----------
99 > 8=opsin, greensensitive human (fragment) S07060
100 ------------------------------------------------------------
101 ------------------------------------------------------------
102 ------------------------------------------------------------
103 ---DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWER
104 WLVVCKPFGN-VRFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSC
105 GPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA-----------
106 ------------------------------------------------------------
107 ------------------------------------------------------------
108 ---VAKQQK------------------------------------ESESTQKAEKEVTRM
109 VVVMVLAFC---------------------------------------------------
110 ------------------------------------------------------------
111 ------------------------------------------------------------
112 --------------------------------
113 > 9== K03494 1 human GCP <>[Science232(4747),193-202'86]
114 MAQQWSLQRLAGRHPQDSYEDSTQ------SSIFTYTN----------------SNST--
115 ------------RGPFEGPNY-----HIAPRWV--------------------Y------
116 ------------------HLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNL
117 AVADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWER
118 WMVVCKPFGN-VRFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSC
119 GPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA-----------
120 ------------------------------------------------------------
121 ------------------------------------------------------------
122 ---VAKQQK------------------------------------ESESTQKAEKEVTRM
123 VVVMVLAFCFCWGPYAFFACFAAA-NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMN
124 RQFRNCILQLF---------GKK-VDD-GS--ELSSASKTEV------------------
125 ------------------------------------------------------------
126 ---SSV---------SSVSP-A----------
127 > 10== Z68193 1 human Red Opsin <>[]
128 MAQQWSLQRLAGRHPQDSYEDSTQ------SSIFTYTN----------------SNST--
129 ------------RGPFEGPNY-----HIAPRWV--------------------Y------
130 ------------------HLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNL
131 AVADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWER
132 WLVVCKPFGN-VRFDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSC
133 GPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA-----------
134 ------------------------------------------------------------
135 ------------------------------------------------------------
136 ---VAKQQK------------------------------------ESESTQKAEKEVTRM
137 VVVMIFAYCVCWGPYTFFACFAAA-NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMN
138 RQFRNCILQLF---------GKK-VDD-GS--ELSSASKTEV------------------
139 ------------------------------------------------------------
140 ---SSV---------SSVSP-A----------
141 > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
142 MTEAWNVAVFAARRSRDD-DDTTR------GSVFTYTN----------------TNNT--
143 ------------RGPFEGPNY-----HIAPRWV--------------------Y------
144 ------------------NLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNL
145 AFVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWER
146 WFVVCKPFGN-IKFDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSC
147 GPDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA-----------
148 ------------------------------------------------------------
149 ------------------------------------------------------------
150 ---VAAQQK------------------------------------ESESTQKAEREVSRM
151 VVVMIVAFCICWGPYASFVSFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMN
152 RQFRNCIMQLF---------GKK-VDD-GS--EASTTSRTEV------------------
153 ------------------------------------------------------------
154 ---SSVS-------NSSVAP-A----------
155 > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90]
156 MA-AWEAAFAARRRHEE--EDTTR------DSVFTYTN----------------SNNT--
157 ------------RGPFEGPNY-----HIAPRWV--------------------Y------
158 ------------------NLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNL
159 AVADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWER
160 WFVVCKPFGN-IKFDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSC
161 GPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA-----------
162 ------------------------------------------------------------
163 ------------------------------------------------------------
164 ---VAAQQK------------------------------------ESESTQKAEKEVSRM
165 VVVMIVAYCFCWGPYTFFACFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMN
166 RQFRNCILQLF---------GKK-VDD-GS--EVST-SRTEV------------------
167 ------------------------------------------------------------
168 ---SSVS-------NSSVSP-A----------
169 > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95]
170 MS-----------------SNSSQ------AP----------------------PNGT--
171 ------------PGPFDGPQW----PYQAPQST--------------------Y------
172 ------------------VGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNL
173 AVADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALER
174 YVVVCKPLGD-FQFQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSC
175 GPNWYTGGS--NNNSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA-----------
176 ------------------------------------------------------------
177 ------------------------------------------------------------
178 ---AAAQQK------------------------------------EADTTQRAEREVTRM
179 VIVMVMAFLLCWLPYSTFALVVAT-HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMN
180 KQFQSCLLEMLC----CGYQPQR-TGK-AS--PGTPGPHADV------------------
181 ------------------------------------------------------------
182 ---TAAG------LRNKVMP-AH-------PV
183 > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
184 MESGNV---------------SSSLFGNVST-ALRPEARLSA---ETRLLGW--------
185 ------------NVPPEELR------HIPEHWL-----------TYPEPPESMN------
186 ------------------YLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINL
187 AFCDFMMMVK--TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDR
188 FNVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSC
189 TFDYLT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA-----------
190 ------------------------------------------------------------
191 ------------------------------------------------------------
192 ---LRDQAKK----------MNVESL----------------RSNVDKNKETAEIRIAKA
193 AITICFLFFCSWTPYGVMSLIGAF-GDKT--LLTPGATMIPACACKMVACIDPFVYAISH
194 PRYRMELQKRCP----WLALNEKAPE--SS-AVASTSTTQEP------------------
195 ------------------------------------------------------------
196 ---------------QQTTA-A----------
197 > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
198 MEYHNV---------------SSVL-GNVSS-VLRPDARLSA---ESRLLGW--------
199 ------------NVPPDELR------HIPEHWL-----------IYPEPPESMN------
200 ------------------YLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINL
201 AFCDFMMMIK--TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDR
202 YNVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSC
203 TFDYLT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA-----------
204 ------------------------------------------------------------
205 ------------------------------------------------------------
206 ---LRDQAKK----------MNVDSL----------------RSNVDKSKEAAEIRIAKA
207 AITICFLFFASWTPYGVMSLIGAF-GDKT--LLTPGATMIPACTCKMVACIDPFVYAISH
208 PRYRMELQKRCP----WLAISEKAPE--SR-AAISTSTTQEQ------------------
209 ------------------------------------------------------------
210 ---------------QQTTA-A----------
211 > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
212 ME---------------------PL-CNASEPPLRPEAR-SSGNGDLQFLGW--------
213 ------------NVPPDQIQ------YIPEHWL-----------TQLEPPASMH------
214 ------------------YMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNL
215 AVFDLIMCLK--APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDR
216 YNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSC
217 SFDYLS--DNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA-----------
218 ------------------------------------------------------------
219 ------------------------------------------------------------
220 ---LREQAKK----------MNVESL----------------RSNVDKSKETAEIRIAKA
221 AITICFLFFVSWTPYGVMSLIGAF-GDKS--LLTQGATMIPACTCKLVACIDPFVYAISH
222 PRYRLELQKRCP----WLGVNEKSGE--IS-SAQST-TTQEQ------------------
223 ------------------------------------------------------------
224 ---------------QQTTA-A----------
225 > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
226 MD---------------------AL-CNASEPPLRPEARMSSGSDELQFLGW--------
227 ------------NVPPDQIQ------YIPEHWL-----------TQLEPPASMH------
228 ------------------YMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNL
229 AVFDLIMCLK--APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDR
230 YNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSC
231 SFDYLS--DNFDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA-----------
232 ------------------------------------------------------------
233 ------------------------------------------------------------
234 ---LREQAKK----------MNVESL----------------RSNVDKSKETAEIRIAKA
235 AITICFLFFVSWTPYGVMSLIGAF-GDKS--LLTPGATMIPACTCKLVACIEPFVYAISH
236 PRYRMELQKRCP----WLGVNEKSGE--AS-SAQST-TTQEQ------------------
237 ------------------------------------------------------------
238 --------------TQQTSA-A----------
239 > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
240 MT-------------------------NATGPQMAYYGAASMD------FGYP-EGVSIV
241 -----------DFVRPEIKP------YVHQHWY-----------NYPPVNPMWH------
242 ------------------YLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNL
243 ALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDR
244 YNIICNGFNG-PKLTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSC
245 SYDYLT--QDFNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA-----------
246 ------------------------------------------------------------
247 ------------------------------------------------------------
248 ---MRAQAKK----------MNVSTL----------------RS-NEADAQRAEIRIAKT
249 ALVNVSLWFICWTPYALISLKGVM-GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISH
250 PKYRLAITQHLP----WFCVHETETKS-ND-DSQSNSTVAQ-------------------
251 ------------------------------------------------------------
252 ------------------DK-A----------
253 > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
254 MA-------------------------NVTGPQMAFYGSGAAT------FGYP-EGMTVA
255 -----------DFVPDRVKH------MVLDHWY-----------NYPPVNPMWH------
256 ------------------YLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNL
257 ALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDR
258 YNIICNGFNG-PKLTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSC
259 SYDYFT--RDMNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA-----------
260 ------------------------------------------------------------
261 ------------------------------------------------------------
262 ---MRAQAKK----------MNVTNL----------------RS-NEAETQRAEIRIAKT
263 ALVNVSLWFICWTPYAAITIQGLL-GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISH
264 PKFRLAITQHLP----WFCVHEKDPND-VE-ENQSSNTQTQ-------------------
265 ------------------------------------------------------------
266 ------------------EK-S----------
267 > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85]
268 ME-------------------SFAVAAAQLGPHFAPLS-----------------NGSVV
269 -----------DKVTPDMAH------LISPYWN-----------QFPAMDPIWA------
270 ------------------KILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINL
271 AISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDR
272 YQVIVKGMAG-RPMTIPLALGKM---------------------------YVPEGNLTSC
273 GIDYLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA-----------
274 ------------------------------------------------------------
275 ------------------------------------------------------------
276 ---MREQAKK----------MNVKSL----------------RS-SEDAEKSAEGKLAKV
277 ALVTITLWFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISH
278 PKYRLALKEKCP----CCVFGKVDDGK-SS-DAQSQATASEA------------------
279 ------------------------------------------------------------
280 ---E--------------SK-A----------
281 > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85]
282 ME-------------------SFAVAAAQLGPHFAPLS-----------------NGSVV
283 -----------DKVTPDMAH------LISPYWN-----------QFPAMDPIWA------
284 ------------------KILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINL
285 AISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDR
286 YQVIVKGMAG-RPMTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSC
287 GIDYLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA-----------
288 ------------------------------------------------------------
289 ------------------------------------------------------------
290 ---MREQAKK----------MNVKSL----------------RS-SEDAEKSAEGKLAKV
291 ALVTITLWFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISH
292 PKYRLALKEKCP----CCVFGKVDDGK-SS-DAQSQATASEA------------------
293 ------------------------------------------------------------
294 ---E--------------SK-A----------
295 > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
296 MD-------------------SFAAVATQLGPQFAAPS-----------------NGSVV
297 -----------DKVTPDMAH------LISPYWD-----------QFPAMDPIWA------
298 ------------------KILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINL
299 AISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDR
300 YQVIVKGMAG-RPMTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSC
301 GIDYLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA-----------
302 ------------------------------------------------------------
303 ------------------------------------------------------------
304 ---MREQAKK----------MNVKSL----------------RS-SEDADKSAEGKLAKV
305 ALVTISLWFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISH
306 PKYRLALKEKCP----CCVFGKVDDGK-SS-EAQSQATTSEA------------------
307 ------------------------------------------------------------
308 ---E--------------SK-A----------
309 > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86]
310 MERSH--------------LPETPFDLAHSGPRFQAQSSG---------------NGSVL
311 -----------DNVLPDMAH------LVNPYWS-----------RFAPMDPMMS------
312 ------------------KILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNL
313 AFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDR
314 YNVIVKGING-TPMTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTAC
315 SIDYMT--RMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA-----------
316 ------------------------------------------------------------
317 ------------------------------------------------------------
318 ---MREQAKK----------MNVKSL----------------RS-SEDCDKSAEGKLAKV
319 ALTTISLWFMAWTPYLVICYFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISH
320 PKYRIVLKEKCP----MCVFGNTDEPKPDA-PASDTETTSEA------------------
321 ------------------------------------------------------------
322 ---D--------------SK-A----------
323 > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
324 MERSL--------------LPEPPLAMALLGPRFEAQTGG---------------NRSVL
325 -----------DNVLPDMAP------LVNPHWS-----------RFAPMDPTMS------
326 ------------------KILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNL
327 AFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDR
328 YNVIVKGING-TPMTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTAC
329 SIDYMT--RQWNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA-----------
330 ------------------------------------------------------------
331 ------------------------------------------------------------
332 ---MRDQAKK----------MNVKSL----------------RS-SEDCDKSAENKLAKV
333 ALTTISLWFMAWTPYLIICYFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISH
334 PNDRLVLKEKCP----MCVCGTTDEPKPDA-PPSDTETTSEA------------------
335 ------------------------------------------------------------
336 ---E--------------SK-D----------
337 > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[]
338 MI-------------------------AVSGPSYEAFSYGGQA-----RF----NNQTVV
339 -----------DKVPPDMLH------LIDANWY-----------QYPPLNPMWH------
340 ------------------GILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINL
341 AISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDR
342 YNVIVKGLSG-KPLSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTAC
343 GTDYFN--RGLLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN-----------
344 ------------------------------------------------------------
345 ------------------------------------------------------------
346 ---MREQAKK----------MNVASL----------------RS-SENQNTSAECKLAKV
347 ALMTISLWFMAWTPYLVINFSGIF-NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISH
348 PKYRAALFAKFP----SLAC-AAEPSS-DA-VSTTSGTTTVT------------------
349 ------------------------------------------------------------
350 ---DNEK-----------SN-A----------
351 > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
352 M---------------------------ANQLSYSSLGWPYQP------------NASVV
353 -----------DTMPKEMLY------MIHEHWY-----------AFPPMNPLWY------
354 ------------------SILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNL
355 AFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDR
356 YNVIVRGMAA-APLTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSC
357 TVDYLT--KDWSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ-----------
358 ------------------------------------------------------------
359 ------------------------------------------------------------
360 ---LREQAKK----------MNVASL----------------RANADQQKQSAECRLAKV
361 AMMTVGLWFMAWTPYLIISWAGVF-SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISH
362 PRYKAALYQRFP----SLACGSGESGS-DV-KSEASATTTME------------------
363 ------------------------------------------------------------
364 ---EKPK----------IPE-A----------
365 > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
366 MVESTTL------------VNQT--------------------------WWY---NPTVD
367 ---------------------------IHPHWA-----------KFDPIPDAVY------
368 ------------------YSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINL
369 AMSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDR
370 YNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSC
371 SFDYLS--TDPSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE-----------
372 ------------------------------------------------------------
373 ------------------------------------------------------------
374 ---MAAMAKR----------LNAKEL----------------R--KAQAGASAEMKLAKI
375 SMVIITQFMLSWSPYAIIALLAQF-GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSH
376 PKFREAIQTTFPWLLTCCQFDEKECED-AN-DAEEEVVASER--GGESRDAAQMKEMMAM
377 MQKMQAQQAAYQPPPPPQGY--PPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAP
378 PQVEAPQGAPPQGVDNQAYQ-A----------
379 > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
380 MGRDLR-------------DNET--------------------------WWY---NPSIV
381 ---------------------------VHPHWR-----------EFDQVPDAVY------
382 ------------------YSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINL
383 AFSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDR
384 YNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNC
385 SFDYIS--RDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE-----------
386 ------------------------------------------------------------
387 ------------------------------------------------------------
388 ---MAAMAKR----------LNAKEL----------------R--KAQAGANAEMRLAKI
389 SIVIVSQFLLSWSPYAVVALLAQF-GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSH
390 PKFREAISQTFPWVLTCCQFDDKETED-DK-DAETEIPAGESSDAAPSADAAQMKEMMAM
391 MQKMQQQQAAY----PPQGYAPPPQGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAP
392 PQ-GAPPAAPPQGVDNQAYQ-A----------
393 > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
394 MMDVNS-------------SGRPDLY----GHLRSFLLP--EVG----------RGLPDL
395 SPDGGADPVAGSWAPHLLS---EVTASPAPTWD------------APPDNASGC------
396 -------GEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSL
397 ALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDR
398 YLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VC
399 LIS--------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------
400 ---------PGF---------------------------------PRVEPDSVI------
401 ----------------ALNGIVK----------------------LQKEVEECAN-----
402 ---LSRLLKH--------------------------------ER-KNISIFKREQKAATT
403 LGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFN
404 RDLRTTYRSLLQ--------CQYRNIN----RKLSAAGMHEA------------------
405 -LKLA-------------------------------------------------------
406 ---ERPE------RPEFVLQNADYCRKKGHDS
407 > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
408 M-----------------------------------------------------------
409 --------------PHLLSGFLEVTASPAPTWD------------APPDNVSGC------
410 -------GEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSL
411 ALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDR
412 YLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VC
413 LIS--------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------
414 ---------PGF---------------------------------PRVQPESVI------
415 ----------------SLNGVVK----------------------LQKEVEECAN-----
416 ---LSRLLKH--------------------------------ER-KNISIFKREQKAATT
417 LGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFN
418 RDLRPTSRSLLQ--------CQYRNIN----RKLSAAGMHEA------------------
419 -LKLA-------------------------------------------------------
420 ---ERPE------RSEFVLQNSDHCGKKGHDT
421 > 31=p A47425 serotonin receptor 5HT-7 - rat
422 M-----------------------------------------------------------
423 --------------PHLLSGFLEVTASPAPTWD------------APPDNVSGC------
424 -------GEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSL
425 ALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDR
426 YLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VC
427 LIS--------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------
428 ---------PGF---------------------------------PRVQPESVI------
429 ----------------SLNGVVK----------------------LQKEVEECAN-----
430 ---LSRLLKH--------------------------------ER-KNISIFKREQKAATT
431 LGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFN
432 RDLRTTYRSLLQ--------CQYRNIN----RKLSAAGMHEA------------------
433 -LKLA-------------------------------------------------------
434 ---ERPE------RSEFVLQNSDHCGKKGHDT
435 > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92]
436 M-DVLS-------------PGQ--------GNNTTSPPAPFETG----------GNTTGI
437 -------------------------SDVTVSYQ---------------------------
438 ------------------VITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSL
439 AVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDR
440 YWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP--EDRSDPD---AC
441 TIS--------KDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK-----------
442 ----------------------------TVKKVEKTGADTRHGASPAPQPKKSVNGESGS
443 RNWRLGVESKAGGAL-CANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCAP-
444 ----ASFERK-----------NERNA----------------EA-KRKMALARERKTVKT
445 LGIIMGTFILCWLPFFIVALVLPF-CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFN
446 KDFQNAFKKIIK--------CKFCR-----------------------------------
447 ------------------------------------------------------------
448 -------------------------------Q
449 > 33=p A35181 serotonin receptor class 1A - rat
450 M-DVFS-------------FGQ--------GNNTTASQEPFGTG----------GNVTSI
451 -------------------------SDVTFSYQ---------------------------
452 ------------------VITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSL
453 AVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDR
454 YWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP--EDRSDPD---AC
455 TIS--------KDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK-----------
456 ----------------------------TVRKVEKKGAGTSLGTSSAPPPKKSLNGQPGS
457 GDWRRCAENRAVGTP-CTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESGSNSYAP-
458 ----ACLERK-----------NERNA----------------EA-KRKMALARERKTVKT
459 LGIIMGTFILCWLPFFIVALVLPF-CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFN
460 KDFQNAFKKIIK--------CKFCR-----------------------------------
461 ------------------------------------------------------------
462 -------------------------------R
463 > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
464 M-ANFT-------------FGDLALDVARMGGLASTPSGLRSTG----------LTTPGL
465 SPTG------------------LVTSDFNDSYGLTGQFINGSHSSRSRDNASAN-DTSAT
466 NMTDDRYWSLTVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSL
467 AVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDR
468 YWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NN--DPDKTGTC
469 IIS--------QDKGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLK
470 TEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK--------
471 --------NRAKKLPENANGVNSNSSSSERLKQIQIE-----------TAEAFANGCAEE
472 AS-IAMLERQ-CNNGKKISSNDTPYS----------------RT-REKLELKRERKAART
473 LAIITGAFLICWLPFFIIALIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFS
474 PEFRSAFQKILF--------GKYRRG----------------------------------
475 ------------------------------------------------------------
476 ------------------------------HR
477 > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
478 M-ANFT-------------FGDLALDVARMGGLASTPSGLRSTG----------LTTPGL
479 SPTG------------------LVTSDFNDSYGLTGQFINGSHSSRSRDNASAN-DTSAT
480 NMTDDRYWSLTVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSL
481 AVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDR
482 YWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NN--DPDKTGTC
483 IIS--------QDKGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLK
484 TEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK--------
485 --------NRAKKLPENANGVNSNSSSSERLKQIQIE-----------TAEAFANGCAEE
486 AS-IAMLERQ-CNNGKKISSNDTPYS----------------RT-REKLELKRERKAART
487 LAIITGAFLICWLPFFIIALIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFS
488 PEFRSAFQKILF--------GKYRRG----------------------------------
489 ------------------------------------------------------------
490 ------------------------------HR
491 > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
492 M-EG-A-------------EGQEELD----WEALYLRLPLQNCS----------WNSTGW
493 EPNW------------------NVTVVPNTTWW----------------QASAPFDTPAA
494 LVRA--------------AAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSL
495 AVADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDR
496 YWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDL--RC
497 VVS--------QDVGYQIFATASSFYVPVLIILILYWRIYQTARKRIRR-----------
498 ----------------------------------RRGATARGGVGPPPVP----------
499 -----------------AGGALVAGGGSGGIAAAVVAVIGRP---LPTISETTTTGFTNV
500 SSNNTSPEKQSCANGLEA---DPPTTGYGAVAAAYYPSLVRRKP-KEAADSKRERKAAKT
501 LAIITGAFVACWLPFFVLAILVPT-CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFS
502 PEFRHAFQRLLC--------GRRVRRR----R----------------------------
503 ------------------------------------------------------------
504 -----------------------------APQ