Mercurial > repos > rnateam > mafft
view test-data/mafft_custom_parttree.aln @ 16:8e649f27aa0d draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 3d98df472498e1273369d23822d10db14f337443
author | bgruening |
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date | Thu, 22 Aug 2024 19:20:24 +0000 |
parents | bf28a8cff401 |
children |
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> 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91] MN-------------------GTE------GDNFYVPF----------------SNKTGL -----------ARSPYEYPQY-----YLAEPWK--------------------Y------ ------------------SALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNL AMANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIER YIVICKPMGN-FRFGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSC GPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE----------- ------------------------------------------------------------ ------------------------------------------------------------ ---AAAAQQ------------------------------------ESASTQKAEKEVTRM VVLMVIGFLVCWVPYASVAFYIFT-HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMN KQFRNCMITTLC----C---GKNPLGD-DE--SGASTSKTEV------------------ ------------------------------------------------------------ ---SSVS-------TSPVSP-A---------- > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94] MN-------------------GTE------GPNFYVPF----------------SNITGV -----------VRSPFEQPQY-----YLAEPWQ--------------------F------ ------------------SMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNL AVADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIER YVVVCKPMSN-FRFGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSC GIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE----------- ------------------------------------------------------------ ------------------------------------------------------------ ---AAAQQQ------------------------------------ESATTQKAEKEVTRM VIIMVIFFLICWLPYASVAMYIFT-HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMN KQFRNCMLTSLC----C---GKNPLGD-DE--ASATASKTE------------------- ------------------------------------------------------------ --------------TSQVAP-A---------- > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9 MN-------------------GTE------GINFYVPM----------------SNKTGV -----------VRSPFEYPQY-----YLAEPWK--------------------Y------ ------------------RLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNL AVADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIER YIVVCKPMGN-FRFSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSC GPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE----------- ------------------------------------------------------------ ------------------------------------------------------------ ---AAAQQQ------------------------------------ESATTQKAEKEVTRM VILMVLGFMLAWTPYAVVAFWIFT-NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMN KQFRNCMITTIC----C---GKNPFGD-EDVSSTVSQSKTEV------------------ ------------------------------------------------------------ ---SSVS-------SSQVSP-A---------- > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish MN-------------------GTE------GKNFYVPM----------------SNRTGL -----------VRSPFEYPQY-----YLAEPWQ--------------------F------ ------------------KILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNL AVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIER YIVVCKPMGS-FKFSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSC GPDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---AAAQQQ------------------------------------DSASTQKAEREVTKM VILMVFGFLIAWTPYATVAAWIFF-NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLN KQFRNCMLTTIF----C---GKNPLGD-DE-SSTVSTSKTEV------------------ ------------------------------------------------------------ ---SS------------VSP-A---------- > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish MN-------------------GTE------GNNFYVPL----------------SNRTGL -----------VRSPFEYPQY-----YLAEPWQ--------------------F------ ------------------KLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNL AVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIER YIVVCKPMGS-FKFSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSC GPDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---AAAQQQ------------------------------------DSASTQKAEREVTKM VILMVLGFLVAWTPYATVAAWIFF-NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLN KQFRSCMLTTLF----C---GKNPLGD-EE-SSTVSTSKTEV------------------ ------------------------------------------------------------ ---SS------------VSP-A---------- > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208- MK-------------------QVPE----FHEDFYIPIPL------------DINNLSAY -------------SPFLVPQD-----HLGNQGI--------------------F------ ------------------MAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNL SIANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFER WLVICKPLGN-FTFKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSC GPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL----------- ------------------------------------------------------------ ------------------------------------------------------------ ---AAKAQA------------------------------------DSASTQKAEREVTKM VVVMVLGFLVCWAPYASFSLWIVS-HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMN KQFRSCMM-KMV----C---GKN-IEE-DE--ASTSSQVTQV------------------ ------------------------------------------------------------ ---SS------------VAPEK---------- > 7== M13299 1 human BCP <>[Science232(4747),193-202'86] MR-------------------KMS------EEEFYL-----------------FKNISSV -------------GPWDGPQY-----HIAPVWA--------------------F------ ------------------YLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNV SFGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFER YIVICKPFGN-FRFSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSC GPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---VAAQQQ------------------------------------ESATTQKAEREVSRM VVVMVGSFCVCYVPYAAFAMYMVN-NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMN KQFQACIM-KMV----C---GKA-MTD-ES--DTCSSQKTEV------------------ ------------------------------------------------------------ ---STVS-------STQVGP-N---------- > 8=opsin, greensensitive human (fragment) S07060 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ---DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWER WLVVCKPFGN-VRFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSC GPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---VAKQQK------------------------------------ESESTQKAEKEVTRM VVVMVLAFC--------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ -------------------------------- > 9== K03494 1 human GCP <>[Science232(4747),193-202'86] MAQQWSLQRLAGRHPQDSYEDSTQ------SSIFTYTN----------------SNST-- ------------RGPFEGPNY-----HIAPRWV--------------------Y------ ------------------HLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNL AVADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWER WMVVCKPFGN-VRFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSC GPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---VAKQQK------------------------------------ESESTQKAEKEVTRM VVVMVLAFCFCWGPYAFFACFAAA-NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMN RQFRNCILQLF---------GKK-VDD-GS--ELSSASKTEV------------------ ------------------------------------------------------------ ---SSV---------SSVSP-A---------- > 10== Z68193 1 human Red Opsin <>[] MAQQWSLQRLAGRHPQDSYEDSTQ------SSIFTYTN----------------SNST-- ------------RGPFEGPNY-----HIAPRWV--------------------Y------ ------------------HLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNL AVADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWER WLVVCKPFGN-VRFDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSC GPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---VAKQQK------------------------------------ESESTQKAEKEVTRM VVVMIFAYCVCWGPYTFFACFAAA-NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMN RQFRNCILQLF---------GKK-VDD-GS--ELSSASKTEV------------------ ------------------------------------------------------------ ---SSV---------SSVSP-A---------- > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92] MTEAWNVAVFAARRSRDD-DDTTR------GSVFTYTN----------------TNNT-- ------------RGPFEGPNY-----HIAPRWV--------------------Y------ ------------------NLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNL AFVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWER WFVVCKPFGN-IKFDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSC GPDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---VAAQQK------------------------------------ESESTQKAEREVSRM VVVMIVAFCICWGPYASFVSFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMN RQFRNCIMQLF---------GKK-VDD-GS--EASTTSRTEV------------------ ------------------------------------------------------------ ---SSVS-------NSSVAP-A---------- > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90] MA-AWEAAFAARRRHEE--EDTTR------DSVFTYTN----------------SNNT-- ------------RGPFEGPNY-----HIAPRWV--------------------Y------ ------------------NLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNL AVADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWER WFVVCKPFGN-IKFDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSC GPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---VAAQQK------------------------------------ESESTQKAEKEVSRM VVVMIVAYCFCWGPYTFFACFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMN RQFRNCILQLF---------GKK-VDD-GS--EVST-SRTEV------------------ ------------------------------------------------------------ ---SSVS-------NSSVSP-A---------- > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95] MS-----------------SNSSQ------AP----------------------PNGT-- ------------PGPFDGPQW----PYQAPQST--------------------Y------ ------------------VGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNL AVADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALER YVVVCKPLGD-FQFQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSC GPNWYTGGS--NNNSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---AAAQQK------------------------------------EADTTQRAEREVTRM VIVMVMAFLLCWLPYSTFALVVAT-HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMN KQFQSCLLEMLC----CGYQPQR-TGK-AS--PGTPGPHADV------------------ ------------------------------------------------------------ ---TAAG------LRNKVMP-AH-------PV > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87] MESGNV---------------SSSLFGNVST-ALRPEARLSA---ETRLLGW-------- ------------NVPPEELR------HIPEHWL-----------TYPEPPESMN------ ------------------YLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINL AFCDFMMMVK--TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDR FNVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSC TFDYLT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---LRDQAKK----------MNVESL----------------RSNVDKNKETAEIRIAKA AITICFLFFCSWTPYGVMSLIGAF-GDKT--LLTPGATMIPACACKMVACIDPFVYAISH PRYRMELQKRCP----WLALNEKAPE--SS-AVASTSTTQEP------------------ ------------------------------------------------------------ ---------------QQTTA-A---------- > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92 MEYHNV---------------SSVL-GNVSS-VLRPDARLSA---ESRLLGW-------- ------------NVPPDELR------HIPEHWL-----------IYPEPPESMN------ ------------------YLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINL AFCDFMMMIK--TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDR YNVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSC TFDYLT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---LRDQAKK----------MNVDSL----------------RSNVDKSKEAAEIRIAKA AITICFLFFASWTPYGVMSLIGAF-GDKT--LLTPGATMIPACTCKMVACIDPFVYAISH PRYRMELQKRCP----WLAISEKAPE--SR-AAISTSTTQEQ------------------ ------------------------------------------------------------ ---------------QQTTA-A---------- > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87] ME---------------------PL-CNASEPPLRPEAR-SSGNGDLQFLGW-------- ------------NVPPDQIQ------YIPEHWL-----------TQLEPPASMH------ ------------------YMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNL AVFDLIMCLK--APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDR YNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSC SFDYLS--DNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---LREQAKK----------MNVESL----------------RSNVDKSKETAEIRIAKA AITICFLFFVSWTPYGVMSLIGAF-GDKS--LLTQGATMIPACTCKLVACIDPFVYAISH PRYRLELQKRCP----WLGVNEKSGE--IS-SAQST-TTQEQ------------------ ------------------------------------------------------------ ---------------QQTTA-A---------- > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92 MD---------------------AL-CNASEPPLRPEARMSSGSDELQFLGW-------- ------------NVPPDQIQ------YIPEHWL-----------TQLEPPASMH------ ------------------YMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNL AVFDLIMCLK--APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDR YNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSC SFDYLS--DNFDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---LREQAKK----------MNVESL----------------RSNVDKSKETAEIRIAKA AITICFLFFVSWTPYGVMSLIGAF-GDKS--LLTPGATMIPACTCKLVACIEPFVYAISH PRYRMELQKRCP----WLGVNEKSGE--AS-SAQST-TTQEQ------------------ ------------------------------------------------------------ --------------TQQTSA-A---------- > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1 MT-------------------------NATGPQMAYYGAASMD------FGYP-EGVSIV -----------DFVRPEIKP------YVHQHWY-----------NYPPVNPMWH------ ------------------YLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNL ALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDR YNIICNGFNG-PKLTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSC SYDYLT--QDFNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---MRAQAKK----------MNVSTL----------------RS-NEADAQRAEIRIAKT ALVNVSLWFICWTPYALISLKGVM-GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISH PKYRLAITQHLP----WFCVHETETKS-ND-DSQSNSTVAQ------------------- ------------------------------------------------------------ ------------------DK-A---------- > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1 MA-------------------------NVTGPQMAFYGSGAAT------FGYP-EGMTVA -----------DFVPDRVKH------MVLDHWY-----------NYPPVNPMWH------ ------------------YLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNL ALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDR YNIICNGFNG-PKLTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSC SYDYFT--RDMNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---MRAQAKK----------MNVTNL----------------RS-NEAETQRAEIRIAKT ALVNVSLWFICWTPYAAITIQGLL-GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISH PKFRLAITQHLP----WFCVHEKDPND-VE-ENQSSNTQTQ------------------- ------------------------------------------------------------ ------------------EK-S---------- > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85] ME-------------------SFAVAAAQLGPHFAPLS-----------------NGSVV -----------DKVTPDMAH------LISPYWN-----------QFPAMDPIWA------ ------------------KILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINL AISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDR YQVIVKGMAG-RPMTIPLALGKM---------------------------YVPEGNLTSC GIDYLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---MREQAKK----------MNVKSL----------------RS-SEDAEKSAEGKLAKV ALVTITLWFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISH PKYRLALKEKCP----CCVFGKVDDGK-SS-DAQSQATASEA------------------ ------------------------------------------------------------ ---E--------------SK-A---------- > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85] ME-------------------SFAVAAAQLGPHFAPLS-----------------NGSVV -----------DKVTPDMAH------LISPYWN-----------QFPAMDPIWA------ ------------------KILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINL AISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDR YQVIVKGMAG-RPMTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSC GIDYLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---MREQAKK----------MNVKSL----------------RS-SEDAEKSAEGKLAKV ALVTITLWFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISH PKYRLALKEKCP----CCVFGKVDDGK-SS-DAQSQATASEA------------------ ------------------------------------------------------------ ---E--------------SK-A---------- > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204' MD-------------------SFAAVATQLGPQFAAPS-----------------NGSVV -----------DKVTPDMAH------LISPYWD-----------QFPAMDPIWA------ ------------------KILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINL AISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDR YQVIVKGMAG-RPMTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSC GIDYLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---MREQAKK----------MNVKSL----------------RS-SEDADKSAEGKLAKV ALVTISLWFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISH PKYRLALKEKCP----CCVFGKVDDGK-SS-EAQSQATTSEA------------------ ------------------------------------------------------------ ---E--------------SK-A---------- > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86] MERSH--------------LPETPFDLAHSGPRFQAQSSG---------------NGSVL -----------DNVLPDMAH------LVNPYWS-----------RFAPMDPMMS------ ------------------KILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNL AFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDR YNVIVKGING-TPMTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTAC SIDYMT--RMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---MREQAKK----------MNVKSL----------------RS-SEDCDKSAEGKLAKV ALTTISLWFMAWTPYLVICYFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISH PKYRIVLKEKCP----MCVFGNTDEPKPDA-PASDTETTSEA------------------ ------------------------------------------------------------ ---D--------------SK-A---------- > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92 MERSL--------------LPEPPLAMALLGPRFEAQTGG---------------NRSVL -----------DNVLPDMAP------LVNPHWS-----------RFAPMDPTMS------ ------------------KILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNL AFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDR YNVIVKGING-TPMTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTAC SIDYMT--RQWNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA----------- ------------------------------------------------------------ ------------------------------------------------------------ ---MRDQAKK----------MNVKSL----------------RS-SEDCDKSAENKLAKV ALTTISLWFMAWTPYLIICYFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISH PNDRLVLKEKCP----MCVCGTTDEPKPDA-PPSDTETTSEA------------------ ------------------------------------------------------------ ---E--------------SK-D---------- > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[] MI-------------------------AVSGPSYEAFSYGGQA-----RF----NNQTVV -----------DKVPPDMLH------LIDANWY-----------QYPPLNPMWH------ ------------------GILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINL AISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDR YNVIVKGLSG-KPLSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTAC GTDYFN--RGLLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN----------- ------------------------------------------------------------ ------------------------------------------------------------ ---MREQAKK----------MNVASL----------------RS-SENQNTSAECKLAKV ALMTISLWFMAWTPYLVINFSGIF-NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISH PKYRAALFAKFP----SLAC-AAEPSS-DA-VSTTSGTTTVT------------------ ------------------------------------------------------------ ---DNEK-----------SN-A---------- > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93] M---------------------------ANQLSYSSLGWPYQP------------NASVV -----------DTMPKEMLY------MIHEHWY-----------AFPPMNPLWY------ ------------------SILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNL AFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDR YNVIVRGMAA-APLTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSC TVDYLT--KDWSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ----------- ------------------------------------------------------------ ------------------------------------------------------------ ---LREQAKK----------MNVASL----------------RANADQQKQSAECRLAKV AMMTVGLWFMAWTPYLIISWAGVF-SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISH PRYKAALYQRFP----SLACGSGESGS-DV-KSEASATTTME------------------ ------------------------------------------------------------ ---EKPK----------IPE-A---------- > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88] MVESTTL------------VNQT--------------------------WWY---NPTVD ---------------------------IHPHWA-----------KFDPIPDAVY------ ------------------YSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINL AMSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDR YNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSC SFDYLS--TDPSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE----------- ------------------------------------------------------------ ------------------------------------------------------------ ---MAAMAKR----------LNAKEL----------------R--KAQAGASAEMKLAKI SMVIITQFMLSWSPYAIIALLAQF-GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSH PKFREAIQTTFPWLLTCCQFDEKECED-AN-DAEEEVVASER--GGESRDAAQMKEMMAM MQKMQAQQAAYQPPPPPQGY--PPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAP PQVEAPQGAPPQGVDNQAYQ-A---------- > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93] MGRDLR-------------DNET--------------------------WWY---NPSIV ---------------------------VHPHWR-----------EFDQVPDAVY------ ------------------YSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINL AFSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDR YNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNC SFDYIS--RDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE----------- ------------------------------------------------------------ ------------------------------------------------------------ ---MAAMAKR----------LNAKEL----------------R--KAQAGANAEMRLAKI SIVIVSQFLLSWSPYAVVALLAQF-GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSH PKFREAISQTFPWVLTCCQFDDKETED-DK-DAETEIPAGESSDAAPSADAAQMKEMMAM MQKMQQQQAAY----PPQGYAPPPQGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAP PQ-GAPPAAPPQGVDNQAYQ-A---------- > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra MMDVNS-------------SGRPDLY----GHLRSFLLP--EVG----------RGLPDL SPDGGADPVAGSWAPHLLS---EVTASPAPTWD------------APPDNASGC------ -------GEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSL ALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDR YLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VC LIS--------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-------- ---------PGF---------------------------------PRVEPDSVI------ ----------------ALNGIVK----------------------LQKEVEECAN----- ---LSRLLKH--------------------------------ER-KNISIFKREQKAATT LGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFN RDLRTTYRSLLQ--------CQYRNIN----RKLSAAGMHEA------------------ -LKLA------------------------------------------------------- ---ERPE------RPEFVLQNADYCRKKGHDS > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93] M----------------------------------------------------------- --------------PHLLSGFLEVTASPAPTWD------------APPDNVSGC------ -------GEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSL ALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDR YLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VC LIS--------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-------- ---------PGF---------------------------------PRVQPESVI------ ----------------SLNGVVK----------------------LQKEVEECAN----- ---LSRLLKH--------------------------------ER-KNISIFKREQKAATT LGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFN RDLRPTSRSLLQ--------CQYRNIN----RKLSAAGMHEA------------------ -LKLA------------------------------------------------------- ---ERPE------RSEFVLQNSDHCGKKGHDT > 31=p A47425 serotonin receptor 5HT-7 - rat M----------------------------------------------------------- --------------PHLLSGFLEVTASPAPTWD------------APPDNVSGC------ -------GEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSL ALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDR YLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VC LIS--------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-------- ---------PGF---------------------------------PRVQPESVI------ ----------------SLNGVVK----------------------LQKEVEECAN----- ---LSRLLKH--------------------------------ER-KNISIFKREQKAATT LGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFN RDLRTTYRSLLQ--------CQYRNIN----RKLSAAGMHEA------------------ -LKLA------------------------------------------------------- ---ERPE------RSEFVLQNSDHCGKKGHDT > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92] M-DVLS-------------PGQ--------GNNTTSPPAPFETG----------GNTTGI -------------------------SDVTVSYQ--------------------------- ------------------VITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSL AVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDR YWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP--EDRSDPD---AC TIS--------KDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK----------- ----------------------------TVKKVEKTGADTRHGASPAPQPKKSVNGESGS RNWRLGVESKAGGAL-CANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCAP- ----ASFERK-----------NERNA----------------EA-KRKMALARERKTVKT LGIIMGTFILCWLPFFIVALVLPF-CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFN KDFQNAFKKIIK--------CKFCR----------------------------------- ------------------------------------------------------------ -------------------------------Q > 33=p A35181 serotonin receptor class 1A - rat M-DVFS-------------FGQ--------GNNTTASQEPFGTG----------GNVTSI -------------------------SDVTFSYQ--------------------------- ------------------VITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSL AVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDR YWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP--EDRSDPD---AC TIS--------KDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK----------- ----------------------------TVRKVEKKGAGTSLGTSSAPPPKKSLNGQPGS GDWRRCAENRAVGTP-CTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESGSNSYAP- ----ACLERK-----------NERNA----------------EA-KRKMALARERKTVKT LGIIMGTFILCWLPFFIVALVLPF-CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFN KDFQNAFKKIIK--------CKFCR----------------------------------- ------------------------------------------------------------ -------------------------------R > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93] M-ANFT-------------FGDLALDVARMGGLASTPSGLRSTG----------LTTPGL SPTG------------------LVTSDFNDSYGLTGQFINGSHSSRSRDNASAN-DTSAT NMTDDRYWSLTVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSL AVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDR YWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NN--DPDKTGTC IIS--------QDKGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLK TEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK-------- --------NRAKKLPENANGVNSNSSSSERLKQIQIE-----------TAEAFANGCAEE AS-IAMLERQ-CNNGKKISSNDTPYS----------------RT-REKLELKRERKAART LAIITGAFLICWLPFFIIALIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFS PEFRSAFQKILF--------GKYRRG---------------------------------- ------------------------------------------------------------ ------------------------------HR > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail M-ANFT-------------FGDLALDVARMGGLASTPSGLRSTG----------LTTPGL SPTG------------------LVTSDFNDSYGLTGQFINGSHSSRSRDNASAN-DTSAT NMTDDRYWSLTVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSL AVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDR YWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NN--DPDKTGTC IIS--------QDKGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLK TEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK-------- --------NRAKKLPENANGVNSNSSSSERLKQIQIE-----------TAEAFANGCAEE AS-IAMLERQ-CNNGKKISSNDTPYS----------------RT-REKLELKRERKAART LAIITGAFLICWLPFFIIALIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFS PEFRSAFQKILF--------GKYRRG---------------------------------- ------------------------------------------------------------ ------------------------------HR > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi M-EG-A-------------EGQEELD----WEALYLRLPLQNCS----------WNSTGW EPNW------------------NVTVVPNTTWW----------------QASAPFDTPAA LVRA--------------AAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSL AVADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDR YWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDL--RC VVS--------QDVGYQIFATASSFYVPVLIILILYWRIYQTARKRIRR----------- ----------------------------------RRGATARGGVGPPPVP---------- -----------------AGGALVAGGGSGGIAAAVVAVIGRP---LPTISETTTTGFTNV SSNNTSPEKQSCANGLEA---DPPTTGYGAVAAAYYPSLVRRKP-KEAADSKRERKAAKT LAIITGAFVACWLPFFVLAILVPT-CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFS PEFRHAFQRLLC--------GRRVRRR----R---------------------------- ------------------------------------------------------------ -----------------------------APQ