--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mafft_custom_parttree.aln	Wed Mar 20 07:34:52 2024 +0000
@@ -0,0 +1,504 @@
+>     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
+MN-------------------GTE------GDNFYVPF----------------SNKTGL
+-----------ARSPYEYPQY-----YLAEPWK--------------------Y------
+------------------SALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNL
+AMANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIER
+YIVICKPMGN-FRFGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSC
+GPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---AAAAQQ------------------------------------ESASTQKAEKEVTRM
+VVLMVIGFLVCWVPYASVAFYIFT-HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMN
+KQFRNCMITTLC----C---GKNPLGD-DE--SGASTSKTEV------------------
+------------------------------------------------------------
+---SSVS-------TSPVSP-A----------
+>     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
+MN-------------------GTE------GPNFYVPF----------------SNITGV
+-----------VRSPFEQPQY-----YLAEPWQ--------------------F------
+------------------SMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNL
+AVADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIER
+YVVVCKPMSN-FRFGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSC
+GIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---AAAQQQ------------------------------------ESATTQKAEKEVTRM
+VIIMVIFFLICWLPYASVAMYIFT-HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMN
+KQFRNCMLTSLC----C---GKNPLGD-DE--ASATASKTE-------------------
+------------------------------------------------------------
+--------------TSQVAP-A----------
+>     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
+MN-------------------GTE------GINFYVPM----------------SNKTGV
+-----------VRSPFEYPQY-----YLAEPWK--------------------Y------
+------------------RLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNL
+AVADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIER
+YIVVCKPMGN-FRFSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSC
+GPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---AAAQQQ------------------------------------ESATTQKAEKEVTRM
+VILMVLGFMLAWTPYAVVAFWIFT-NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMN
+KQFRNCMITTIC----C---GKNPFGD-EDVSSTVSQSKTEV------------------
+------------------------------------------------------------
+---SSVS-------SSQVSP-A----------
+>     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
+MN-------------------GTE------GKNFYVPM----------------SNRTGL
+-----------VRSPFEYPQY-----YLAEPWQ--------------------F------
+------------------KILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNL
+AVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIER
+YIVVCKPMGS-FKFSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSC
+GPDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---AAAQQQ------------------------------------DSASTQKAEREVTKM
+VILMVFGFLIAWTPYATVAAWIFF-NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLN
+KQFRNCMLTTIF----C---GKNPLGD-DE-SSTVSTSKTEV------------------
+------------------------------------------------------------
+---SS------------VSP-A----------
+>     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
+MN-------------------GTE------GNNFYVPL----------------SNRTGL
+-----------VRSPFEYPQY-----YLAEPWQ--------------------F------
+------------------KLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNL
+AVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIER
+YIVVCKPMGS-FKFSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSC
+GPDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---AAAQQQ------------------------------------DSASTQKAEREVTKM
+VILMVLGFLVAWTPYATVAAWIFF-NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLN
+KQFRSCMLTTLF----C---GKNPLGD-EE-SSTVSTSKTEV------------------
+------------------------------------------------------------
+---SS------------VSP-A----------
+>     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
+MK-------------------QVPE----FHEDFYIPIPL------------DINNLSAY
+-------------SPFLVPQD-----HLGNQGI--------------------F------
+------------------MAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNL
+SIANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFER
+WLVICKPLGN-FTFKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSC
+GPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---AAKAQA------------------------------------DSASTQKAEREVTKM
+VVVMVLGFLVCWAPYASFSLWIVS-HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMN
+KQFRSCMM-KMV----C---GKN-IEE-DE--ASTSSQVTQV------------------
+------------------------------------------------------------
+---SS------------VAPEK----------
+>     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
+MR-------------------KMS------EEEFYL-----------------FKNISSV
+-------------GPWDGPQY-----HIAPVWA--------------------F------
+------------------YLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNV
+SFGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFER
+YIVICKPFGN-FRFSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSC
+GPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---VAAQQQ------------------------------------ESATTQKAEREVSRM
+VVVMVGSFCVCYVPYAAFAMYMVN-NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMN
+KQFQACIM-KMV----C---GKA-MTD-ES--DTCSSQKTEV------------------
+------------------------------------------------------------
+---STVS-------STQVGP-N----------
+>     8=opsin, greensensitive  human (fragment) S07060
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWER
+WLVVCKPFGN-VRFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSC
+GPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---VAKQQK------------------------------------ESESTQKAEKEVTRM
+VVVMVLAFC---------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+--------------------------------
+>     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
+MAQQWSLQRLAGRHPQDSYEDSTQ------SSIFTYTN----------------SNST--
+------------RGPFEGPNY-----HIAPRWV--------------------Y------
+------------------HLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNL
+AVADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWER
+WMVVCKPFGN-VRFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSC
+GPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---VAKQQK------------------------------------ESESTQKAEKEVTRM
+VVVMVLAFCFCWGPYAFFACFAAA-NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMN
+RQFRNCILQLF---------GKK-VDD-GS--ELSSASKTEV------------------
+------------------------------------------------------------
+---SSV---------SSVSP-A----------
+>    10== Z68193   1 human Red Opsin <>[]
+MAQQWSLQRLAGRHPQDSYEDSTQ------SSIFTYTN----------------SNST--
+------------RGPFEGPNY-----HIAPRWV--------------------Y------
+------------------HLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNL
+AVADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWER
+WLVVCKPFGN-VRFDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSC
+GPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---VAKQQK------------------------------------ESESTQKAEKEVTRM
+VVVMIFAYCVCWGPYTFFACFAAA-NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMN
+RQFRNCILQLF---------GKK-VDD-GS--ELSSASKTEV------------------
+------------------------------------------------------------
+---SSV---------SSVSP-A----------
+>    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
+MTEAWNVAVFAARRSRDD-DDTTR------GSVFTYTN----------------TNNT--
+------------RGPFEGPNY-----HIAPRWV--------------------Y------
+------------------NLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNL
+AFVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWER
+WFVVCKPFGN-IKFDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSC
+GPDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---VAAQQK------------------------------------ESESTQKAEREVSRM
+VVVMIVAFCICWGPYASFVSFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMN
+RQFRNCIMQLF---------GKK-VDD-GS--EASTTSRTEV------------------
+------------------------------------------------------------
+---SSVS-------NSSVAP-A----------
+>    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
+MA-AWEAAFAARRRHEE--EDTTR------DSVFTYTN----------------SNNT--
+------------RGPFEGPNY-----HIAPRWV--------------------Y------
+------------------NLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNL
+AVADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWER
+WFVVCKPFGN-IKFDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSC
+GPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---VAAQQK------------------------------------ESESTQKAEKEVSRM
+VVVMIVAYCFCWGPYTFFACFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMN
+RQFRNCILQLF---------GKK-VDD-GS--EVST-SRTEV------------------
+------------------------------------------------------------
+---SSVS-------NSSVSP-A----------
+>    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
+MS-----------------SNSSQ------AP----------------------PNGT--
+------------PGPFDGPQW----PYQAPQST--------------------Y------
+------------------VGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNL
+AVADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALER
+YVVVCKPLGD-FQFQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSC
+GPNWYTGGS--NNNSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---AAAQQK------------------------------------EADTTQRAEREVTRM
+VIVMVMAFLLCWLPYSTFALVVAT-HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMN
+KQFQSCLLEMLC----CGYQPQR-TGK-AS--PGTPGPHADV------------------
+------------------------------------------------------------
+---TAAG------LRNKVMP-AH-------PV
+>    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
+MESGNV---------------SSSLFGNVST-ALRPEARLSA---ETRLLGW--------
+------------NVPPEELR------HIPEHWL-----------TYPEPPESMN------
+------------------YLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINL
+AFCDFMMMVK--TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDR
+FNVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSC
+TFDYLT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---LRDQAKK----------MNVESL----------------RSNVDKNKETAEIRIAKA
+AITICFLFFCSWTPYGVMSLIGAF-GDKT--LLTPGATMIPACACKMVACIDPFVYAISH
+PRYRMELQKRCP----WLALNEKAPE--SS-AVASTSTTQEP------------------
+------------------------------------------------------------
+---------------QQTTA-A----------
+>    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
+MEYHNV---------------SSVL-GNVSS-VLRPDARLSA---ESRLLGW--------
+------------NVPPDELR------HIPEHWL-----------IYPEPPESMN------
+------------------YLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINL
+AFCDFMMMIK--TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDR
+YNVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSC
+TFDYLT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---LRDQAKK----------MNVDSL----------------RSNVDKSKEAAEIRIAKA
+AITICFLFFASWTPYGVMSLIGAF-GDKT--LLTPGATMIPACTCKMVACIDPFVYAISH
+PRYRMELQKRCP----WLAISEKAPE--SR-AAISTSTTQEQ------------------
+------------------------------------------------------------
+---------------QQTTA-A----------
+>    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
+ME---------------------PL-CNASEPPLRPEAR-SSGNGDLQFLGW--------
+------------NVPPDQIQ------YIPEHWL-----------TQLEPPASMH------
+------------------YMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNL
+AVFDLIMCLK--APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDR
+YNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSC
+SFDYLS--DNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---LREQAKK----------MNVESL----------------RSNVDKSKETAEIRIAKA
+AITICFLFFVSWTPYGVMSLIGAF-GDKS--LLTQGATMIPACTCKLVACIDPFVYAISH
+PRYRLELQKRCP----WLGVNEKSGE--IS-SAQST-TTQEQ------------------
+------------------------------------------------------------
+---------------QQTTA-A----------
+>    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
+MD---------------------AL-CNASEPPLRPEARMSSGSDELQFLGW--------
+------------NVPPDQIQ------YIPEHWL-----------TQLEPPASMH------
+------------------YMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNL
+AVFDLIMCLK--APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDR
+YNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSC
+SFDYLS--DNFDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---LREQAKK----------MNVESL----------------RSNVDKSKETAEIRIAKA
+AITICFLFFVSWTPYGVMSLIGAF-GDKS--LLTPGATMIPACTCKLVACIEPFVYAISH
+PRYRMELQKRCP----WLGVNEKSGE--AS-SAQST-TTQEQ------------------
+------------------------------------------------------------
+--------------TQQTSA-A----------
+>    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
+MT-------------------------NATGPQMAYYGAASMD------FGYP-EGVSIV
+-----------DFVRPEIKP------YVHQHWY-----------NYPPVNPMWH------
+------------------YLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNL
+ALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDR
+YNIICNGFNG-PKLTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSC
+SYDYLT--QDFNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---MRAQAKK----------MNVSTL----------------RS-NEADAQRAEIRIAKT
+ALVNVSLWFICWTPYALISLKGVM-GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISH
+PKYRLAITQHLP----WFCVHETETKS-ND-DSQSNSTVAQ-------------------
+------------------------------------------------------------
+------------------DK-A----------
+>    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
+MA-------------------------NVTGPQMAFYGSGAAT------FGYP-EGMTVA
+-----------DFVPDRVKH------MVLDHWY-----------NYPPVNPMWH------
+------------------YLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNL
+ALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDR
+YNIICNGFNG-PKLTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSC
+SYDYFT--RDMNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---MRAQAKK----------MNVTNL----------------RS-NEAETQRAEIRIAKT
+ALVNVSLWFICWTPYAAITIQGLL-GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISH
+PKFRLAITQHLP----WFCVHEKDPND-VE-ENQSSNTQTQ-------------------
+------------------------------------------------------------
+------------------EK-S----------
+>    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
+ME-------------------SFAVAAAQLGPHFAPLS-----------------NGSVV
+-----------DKVTPDMAH------LISPYWN-----------QFPAMDPIWA------
+------------------KILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINL
+AISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDR
+YQVIVKGMAG-RPMTIPLALGKM---------------------------YVPEGNLTSC
+GIDYLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---MREQAKK----------MNVKSL----------------RS-SEDAEKSAEGKLAKV
+ALVTITLWFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISH
+PKYRLALKEKCP----CCVFGKVDDGK-SS-DAQSQATASEA------------------
+------------------------------------------------------------
+---E--------------SK-A----------
+>    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
+ME-------------------SFAVAAAQLGPHFAPLS-----------------NGSVV
+-----------DKVTPDMAH------LISPYWN-----------QFPAMDPIWA------
+------------------KILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINL
+AISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDR
+YQVIVKGMAG-RPMTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSC
+GIDYLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---MREQAKK----------MNVKSL----------------RS-SEDAEKSAEGKLAKV
+ALVTITLWFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISH
+PKYRLALKEKCP----CCVFGKVDDGK-SS-DAQSQATASEA------------------
+------------------------------------------------------------
+---E--------------SK-A----------
+>    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
+MD-------------------SFAAVATQLGPQFAAPS-----------------NGSVV
+-----------DKVTPDMAH------LISPYWD-----------QFPAMDPIWA------
+------------------KILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINL
+AISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDR
+YQVIVKGMAG-RPMTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSC
+GIDYLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---MREQAKK----------MNVKSL----------------RS-SEDADKSAEGKLAKV
+ALVTISLWFMAWTPYLVINCMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISH
+PKYRLALKEKCP----CCVFGKVDDGK-SS-EAQSQATTSEA------------------
+------------------------------------------------------------
+---E--------------SK-A----------
+>    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
+MERSH--------------LPETPFDLAHSGPRFQAQSSG---------------NGSVL
+-----------DNVLPDMAH------LVNPYWS-----------RFAPMDPMMS------
+------------------KILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNL
+AFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDR
+YNVIVKGING-TPMTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTAC
+SIDYMT--RMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---MREQAKK----------MNVKSL----------------RS-SEDCDKSAEGKLAKV
+ALTTISLWFMAWTPYLVICYFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISH
+PKYRIVLKEKCP----MCVFGNTDEPKPDA-PASDTETTSEA------------------
+------------------------------------------------------------
+---D--------------SK-A----------
+>    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
+MERSL--------------LPEPPLAMALLGPRFEAQTGG---------------NRSVL
+-----------DNVLPDMAP------LVNPHWS-----------RFAPMDPTMS------
+------------------KILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNL
+AFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDR
+YNVIVKGING-TPMTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTAC
+SIDYMT--RQWNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---MRDQAKK----------MNVKSL----------------RS-SEDCDKSAENKLAKV
+ALTTISLWFMAWTPYLIICYFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISH
+PNDRLVLKEKCP----MCVCGTTDEPKPDA-PPSDTETTSEA------------------
+------------------------------------------------------------
+---E--------------SK-D----------
+>    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
+MI-------------------------AVSGPSYEAFSYGGQA-----RF----NNQTVV
+-----------DKVPPDMLH------LIDANWY-----------QYPPLNPMWH------
+------------------GILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINL
+AISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDR
+YNVIVKGLSG-KPLSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTAC
+GTDYFN--RGLLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---MREQAKK----------MNVASL----------------RS-SENQNTSAECKLAKV
+ALMTISLWFMAWTPYLVINFSGIF-NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISH
+PKYRAALFAKFP----SLAC-AAEPSS-DA-VSTTSGTTTVT------------------
+------------------------------------------------------------
+---DNEK-----------SN-A----------
+>    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
+M---------------------------ANQLSYSSLGWPYQP------------NASVV
+-----------DTMPKEMLY------MIHEHWY-----------AFPPMNPLWY------
+------------------SILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNL
+AFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDR
+YNVIVRGMAA-APLTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSC
+TVDYLT--KDWSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---LREQAKK----------MNVASL----------------RANADQQKQSAECRLAKV
+AMMTVGLWFMAWTPYLIISWAGVF-SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISH
+PRYKAALYQRFP----SLACGSGESGS-DV-KSEASATTTME------------------
+------------------------------------------------------------
+---EKPK----------IPE-A----------
+>    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
+MVESTTL------------VNQT--------------------------WWY---NPTVD
+---------------------------IHPHWA-----------KFDPIPDAVY------
+------------------YSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINL
+AMSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDR
+YNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSC
+SFDYLS--TDPSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---MAAMAKR----------LNAKEL----------------R--KAQAGASAEMKLAKI
+SMVIITQFMLSWSPYAIIALLAQF-GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSH
+PKFREAIQTTFPWLLTCCQFDEKECED-AN-DAEEEVVASER--GGESRDAAQMKEMMAM
+MQKMQAQQAAYQPPPPPQGY--PPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAP
+PQVEAPQGAPPQGVDNQAYQ-A----------
+>    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
+MGRDLR-------------DNET--------------------------WWY---NPSIV
+---------------------------VHPHWR-----------EFDQVPDAVY------
+------------------YSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINL
+AFSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDR
+YNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNC
+SFDYIS--RDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE-----------
+------------------------------------------------------------
+------------------------------------------------------------
+---MAAMAKR----------LNAKEL----------------R--KAQAGANAEMRLAKI
+SIVIVSQFLLSWSPYAVVALLAQF-GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSH
+PKFREAISQTFPWVLTCCQFDDKETED-DK-DAETEIPAGESSDAAPSADAAQMKEMMAM
+MQKMQQQQAAY----PPQGYAPPPQGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAP
+PQ-GAPPAAPPQGVDNQAYQ-A----------
+>    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
+MMDVNS-------------SGRPDLY----GHLRSFLLP--EVG----------RGLPDL
+SPDGGADPVAGSWAPHLLS---EVTASPAPTWD------------APPDNASGC------
+-------GEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSL
+ALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDR
+YLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VC
+LIS--------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------
+---------PGF---------------------------------PRVEPDSVI------
+----------------ALNGIVK----------------------LQKEVEECAN-----
+---LSRLLKH--------------------------------ER-KNISIFKREQKAATT
+LGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFN
+RDLRTTYRSLLQ--------CQYRNIN----RKLSAAGMHEA------------------
+-LKLA-------------------------------------------------------
+---ERPE------RPEFVLQNADYCRKKGHDS
+>    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
+M-----------------------------------------------------------
+--------------PHLLSGFLEVTASPAPTWD------------APPDNVSGC------
+-------GEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSL
+ALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDR
+YLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VC
+LIS--------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------
+---------PGF---------------------------------PRVQPESVI------
+----------------SLNGVVK----------------------LQKEVEECAN-----
+---LSRLLKH--------------------------------ER-KNISIFKREQKAATT
+LGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFN
+RDLRPTSRSLLQ--------CQYRNIN----RKLSAAGMHEA------------------
+-LKLA-------------------------------------------------------
+---ERPE------RSEFVLQNSDHCGKKGHDT
+>    31=p A47425 serotonin receptor 5HT-7 - rat
+M-----------------------------------------------------------
+--------------PHLLSGFLEVTASPAPTWD------------APPDNVSGC------
+-------GEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSL
+ALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDR
+YLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDK--VC
+LIS--------QDFGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------
+---------PGF---------------------------------PRVQPESVI------
+----------------SLNGVVK----------------------LQKEVEECAN-----
+---LSRLLKH--------------------------------ER-KNISIFKREQKAATT
+LGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFN
+RDLRTTYRSLLQ--------CQYRNIN----RKLSAAGMHEA------------------
+-LKLA-------------------------------------------------------
+---ERPE------RSEFVLQNSDHCGKKGHDT
+>    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
+M-DVLS-------------PGQ--------GNNTTSPPAPFETG----------GNTTGI
+-------------------------SDVTVSYQ---------------------------
+------------------VITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSL
+AVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDR
+YWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP--EDRSDPD---AC
+TIS--------KDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK-----------
+----------------------------TVKKVEKTGADTRHGASPAPQPKKSVNGESGS
+RNWRLGVESKAGGAL-CANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCAP-
+----ASFERK-----------NERNA----------------EA-KRKMALARERKTVKT
+LGIIMGTFILCWLPFFIVALVLPF-CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFN
+KDFQNAFKKIIK--------CKFCR-----------------------------------
+------------------------------------------------------------
+-------------------------------Q
+>    33=p A35181 serotonin receptor class 1A - rat
+M-DVFS-------------FGQ--------GNNTTASQEPFGTG----------GNVTSI
+-------------------------SDVTFSYQ---------------------------
+------------------VITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSL
+AVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDR
+YWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP--EDRSDPD---AC
+TIS--------KDHGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK-----------
+----------------------------TVRKVEKKGAGTSLGTSSAPPPKKSLNGQPGS
+GDWRRCAENRAVGTP-CTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESGSNSYAP-
+----ACLERK-----------NERNA----------------EA-KRKMALARERKTVKT
+LGIIMGTFILCWLPFFIVALVLPF-CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFN
+KDFQNAFKKIIK--------CKFCR-----------------------------------
+------------------------------------------------------------
+-------------------------------R
+>    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
+M-ANFT-------------FGDLALDVARMGGLASTPSGLRSTG----------LTTPGL
+SPTG------------------LVTSDFNDSYGLTGQFINGSHSSRSRDNASAN-DTSAT
+NMTDDRYWSLTVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSL
+AVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDR
+YWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NN--DPDKTGTC
+IIS--------QDKGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLK
+TEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK--------
+--------NRAKKLPENANGVNSNSSSSERLKQIQIE-----------TAEAFANGCAEE
+AS-IAMLERQ-CNNGKKISSNDTPYS----------------RT-REKLELKRERKAART
+LAIITGAFLICWLPFFIIALIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFS
+PEFRSAFQKILF--------GKYRRG----------------------------------
+------------------------------------------------------------
+------------------------------HR
+>    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
+M-ANFT-------------FGDLALDVARMGGLASTPSGLRSTG----------LTTPGL
+SPTG------------------LVTSDFNDSYGLTGQFINGSHSSRSRDNASAN-DTSAT
+NMTDDRYWSLTVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSL
+AVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDR
+YWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NN--DPDKTGTC
+IIS--------QDKGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLK
+TEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK--------
+--------NRAKKLPENANGVNSNSSSSERLKQIQIE-----------TAEAFANGCAEE
+AS-IAMLERQ-CNNGKKISSNDTPYS----------------RT-REKLELKRERKAART
+LAIITGAFLICWLPFFIIALIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFS
+PEFRSAFQKILF--------GKYRRG----------------------------------
+------------------------------------------------------------
+------------------------------HR
+>    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
+M-EG-A-------------EGQEELD----WEALYLRLPLQNCS----------WNSTGW
+EPNW------------------NVTVVPNTTWW----------------QASAPFDTPAA
+LVRA--------------AAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSL
+AVADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDR
+YWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDL--RC
+VVS--------QDVGYQIFATASSFYVPVLIILILYWRIYQTARKRIRR-----------
+----------------------------------RRGATARGGVGPPPVP----------
+-----------------AGGALVAGGGSGGIAAAVVAVIGRP---LPTISETTTTGFTNV
+SSNNTSPEKQSCANGLEA---DPPTTGYGAVAAAYYPSLVRRKP-KEAADSKRERKAAKT
+LAIITGAFVACWLPFFVLAILVPT-CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFS
+PEFRHAFQRLLC--------GRRVRRR----R----------------------------
+------------------------------------------------------------
+-----------------------------APQ