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comparison test-data/mafft_explicit_amino_blosum80.clustal.aln @ 15:bf28a8cff401 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
author bgruening
date Wed, 20 Mar 2024 07:34:52 +0000
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14:6f28e90db932 15:bf28a8cff401
1 CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.520)
2
3
4 1== ----------------------------------------MN------------------
5 2== ----------------------------------------MN------------------
6 3== ----------------------------------------MN------------------
7 4=p ----------------------------------------MN------------------
8 5=p ----------------------------------------MN------------------
9 6== ----------------------------------------MK------------------
10 7== ----------------------------------------MR------------------
11 8=opsin, ------------------------------------------------------------
12 9== ----------------------------------------MAQQWSLQRLAGRHPQDS--
13 10== ----------------------------------------MAQQWSLQRLAGRHPQDS--
14 11== ----------------------------------------MTEAWNVAVFAARRSRDD--
15 12== ----------------------------------------MA-AWEAAFAARRRHEE---
16 13== ----------------------------------------MS------------------
17 14== ----------MESGNVS-------------SSLFGNVSTALR------------------
18 15== ----------MEYHNVS-------------SVL-GNVSSVLR------------------
19 16== ----------ME-------------------PLCNASEPPLR------------------
20 17== ----------MD-------------------ALCNASEPPLR------------------
21 18== --------------------------------MTNATGPQMA------------------
22 19== --------------------------------MANVTGPQMA------------------
23 20== ----------ME---SF-------------AVAAAQLGPHFA------------------
24 21== ----------ME---SF-------------AVAAAQLGPHFA------------------
25 22== ----------MD---SF-------------AAVATQLGPQFA------------------
26 23== -----MERSHLP---ET-------------PFDLAHSGPRFQ------------------
27 24== -----MERSLLP---EP-------------PLAMALLGPRFE------------------
28 25== --------------------------------MIAVSGPSYE------------------
29 26== ----------------------------------MANQLSYS------------------
30 27== ---------------------------------------MVE------------------
31 28== ----------------------------------------MG------------------
32 29== ---------MMDVNSSGRPDLYGHLRSFL-LPEVGRGLPDLSPDGGADPVAG-SWAPHLL
33 30== -------------------------------------------------------MPHLL
34 31=p -------------------------------------------------------MPHLL
35 32== ----------MDVLSP--------------------------------------------
36 33=p ----------MDVFSF--------------------------------------------
37 34== MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYG---L
38 35=p MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYG---L
39 36== -MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGWEPNWNVTVVPNTTW-----
40
41
42 1== -----GTE--GDN-FYVP----FSNKTGLARSPYEYPQY-YLAEPWK-----------YS
43 2== -----GTE--GPN-FYVP----FSNITGVVRSPFEQPQY-YLAEPWQ-----------FS
44 3== -----GTE--GIN-FYVP----MSNKTGVVRSPFEYPQY-YLAEPWK-----------YR
45 4=p -----GTE--GKN-FYVP----MSNRTGLVRSPFEYPQY-YLAEPWQ-----------FK
46 5=p -----GTE--GNN-FYVP----LSNRTGLVRSPFEYPQY-YLAEPWQ-----------FK
47 6== -----QVPEFHED-FYIPIPLDINNLSAY--SPFLVPQD-HLGNQGI-----------FM
48 7== -----KMS--EEE-FYL-----FKNISSV--GPWDGPQY-HIAPVWA-----------FY
49 8=opsin, ------------------------------------------------------------
50 9== ----YEDSTQSSI-FT------YTNSNST-RGPFEGPNY-HIAPRWV-----------YH
51 10== ----YEDSTQSSI-FT------YTNSNST-RGPFEGPNY-HIAPRWV-----------YH
52 11== -----DDTTRGSV-FT------YTNTNNT-RGPFEGPNY-HIAPRWV-----------YN
53 12== -----EDTTRDSV-FT------YTNSNNT-RGPFEGPNY-HIAPRWV-----------YN
54 13== -----SNSSQAP-------------PNGT-PGPFDGPQWPYQAPQST-----------YV
55 14== -----PEARLSA-----------ETRLLGWNVPPEELR--HIPEHWLT--YPEPPESMNY
56 15== -----PDARLSA-----------ESRLLGWNVPPDELR--HIPEHWLI--YPEPPESMNY
57 16== -----PEAR-SSG---N-----GDLQFLGWNVPPDQIQ--YIPEHWLT--QLEPPASMHY
58 17== -----PEARMSSG---S-----DELQFLGWNVPPDQIQ--YIPEHWLT--QLEPPASMHY
59 18== -----YYGAASMD-FGY-----PEGVSIVDFVRPEIKP--YVHQHWYN--YPPVNPMWHY
60 19== -----FYGSGAAT-FGY-----PEGMTVADFVPDRVKH--MVLDHWYN--YPPVNPMWHY
61 20== -----PLS----------------NGSVVDKVTPDMAH--LISPYWNQ--FPAMDPIWAK
62 21== -----PLS----------------NGSVVDKVTPDMAH--LISPYWNQ--FPAMDPIWAK
63 22== -----APS----------------NGSVVDKVTPDMAH--LISPYWDQ--FPAMDPIWAK
64 23== -----AQSSG--------------NGSVLDNVLPDMAH--LVNPYWSR--FAPMDPMMSK
65 24== -----AQTGG--------------NRSVLDNVLPDMAP--LVNPHWSR--FAPMDPTMSK
66 25== -----AFSYGGQARF--------NNQTVVDKVPPDMLH--LIDANWYQ--YPPLNPMWHG
67 26== -----SLGWPYQP-----------NASVVDTMPKEMLY--MIHEHWYA--FPPMNPLWYS
68 27== -----STTLVNQT-WWY-------NPTVD------------IHPHWAK--FDPIPDAVYY
69 28== -----RDLRDNET-WWY-------NPSIV------------VHPHWRE--FDQVPDAVYY
70 29== S---EVTASPAPT-WDAP----PDNASGCGEQIN----------------YGRVE---KV
71 30== SGFLEVTASPAPT-WDAP----PDNVSGCGEQIN----------------YGRVE---KV
72 31=p SGFLEVTASPAPT-WDAP----PDNVSGCGEQIN----------------YGRVE---KV
73 32== -GQGNNTTSPPAP-FET-----GGNTTGISDVT-----------------VSYQ-----V
74 33=p -GQGNNTTASQEP-FGT-----GGNVTSISDVT-----------------FSYQ-----V
75 34== TGQFINGSHSSRS-RDNA----SANDTSATNMTDD--------RYWSLTVYSHEH---LV
76 35=p TGQFINGSHSSRS-RDNA----SANDTSATNMTDD--------RYWSLTVYSHEH---LV
77 36== -------WQASAP-FDTP----AALVRAAAK-----------------------------
78
79
80 1== ALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYT
81 2== MLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYT
82 3== LVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYT
83 4=p ILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYT
84 5=p LLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYT
85 6== AMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYS
86 7== LQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVA
87 8=opsin, --------------------------------------------DLAETVIA-STISIVN
88 9== LTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVN
89 10== LTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVN
90 11== LVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFN
91 12== LTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVIN
92 13== GVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSN
93 14== LLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYN
94 15== LLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYN
95 16== MLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--N
96 17== MLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYN
97 18== LLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYN
98 19== LLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYN
99 20== ILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGIN
100 21== ILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGIN
101 22== ILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGIN
102 23== ILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIIN
103 24== ILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIIN
104 25== ILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVIN
105 26== ILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSN
106 27== SVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTIS
107 28== SLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTIS
108 29== VIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVT
109 30== VIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVT
110 31=p VIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVT
111 32== ITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALY
112 33=p ITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALY
113 34== LTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVS
114 35=p LTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVS
115 36== --AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVY
116 .
117
118 1== SMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FRFGNTHA
119 2== SLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FRFGENHA
120 3== AWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FRFSATHA
121 4=p AIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSSHA
122 5=p AIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSTHA
123 6== FFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FTFKTPHA
124 7== SCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FRFSSKHA
125 8=opsin, QVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLA
126 9== QVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VRFDAKLA
127 10== QVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLA
128 11== QIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IKFDSKLA
129 12== QIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IKFDGKLA
130 13== NIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQFQRRHA
131 14== SFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKA
132 15== SFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKA
133 16== SFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKA
134 17== SFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKA
135 18== CFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PKLTTGKA
136 19== CFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PKLTQGKA
137 20== LYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLA
138 21== LYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLA
139 22== LYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLA
140 23== FYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTS
141 24== FYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTS
142 25== CYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGA
143 26== CFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-APLTHKKA
144 27== AFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRA
145 28== CFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRA
146 29== DLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCM
147 30== DLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCM
148 31=p DLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCM
149 32== QVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRA
150 33=p QVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRA
151 34== EIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRI
152 35=p EIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRI
153 36== EVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRV
154 : : * : : :*: : :
155
156 1== IMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNNESYVVY
157 2== IMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNNESFVIY
158 3== MMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHNESYVLY
159 4=p FAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNNESYVIY
160 5=p SAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNNESYVLY
161 6== IAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNNESYVMF
162 7== LTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRSESYTWF
163 8=opsin, IVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIV
164 9== IVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIV
165 10== IVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIV
166 11== IIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGCQSFMLT
167 12== VAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVV
168 13== VSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--NSYILS
169 14== IAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVAC
170 15== IAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVAC
171 16== VIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGT
172 17== VIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGT
173 18== VVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNTFSYNIF
174 19== TFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNTITYNIC
175 20== LGKM---------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIF
176 21== LGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIF
177 22== LGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIF
178 23== IMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNPRSYLIT
179 24== IMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNPRSYLIT
180 25== LIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLSASYLVC
181 26== TLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSSASYVVI
182 27== FLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPSTRSFILC
183 28== FIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTTRSNILC
184 29== AKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIY
185 30== AKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIY
186 31=p AKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIY
187 32== AALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIY
188 33=p AALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIY
189 34== LLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIF
190 35=p LLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIF
191 36== GMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV----------GYQIF
192 :
193
194 1== MFVVHFLVPFVIIFFCYGRLLCTV----KE------------------------------
195 2== MFVVHFTIPMIVIFFCYGQLVFTV----KE------------------------------
196 3== MFVIHFIIPVVVIFFSYGRLICKV----RE------------------------------
197 4=p MFVCHFILPVAVIFFTYGRLVCTV----KA------------------------------
198 5=p MFICHFILPVTIIFFTYGRLVCTV----KA------------------------------
199 6== LFCFCFAVPFGTIVFCYGQLLITL----KL------------------------------
200 7== LFIFCFIVPLSLICFSYTQLLRAL----KA------------------------------
201 8=opsin, LMVTCCITPLSIIVLCYLQVWLAI----RA------------------------------
202 9== LMVTCCITPLSIIVLCYLQVWLAI----RA------------------------------
203 10== LMVTCCIIPLAIIMLCYLQVWLAI----RA------------------------------
204 11== LMITCCFLPLFIIIVCYLQVWMAI----RA------------------------------
205 12== LMVTCCFFPLAIIILCYLQVWLAI----RA------------------------------
206 13== LFVTCFVLPLSLILFSYTNLLLTL----RA------------------------------
207 14== IFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------------
208 15== IFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------------
209 16== IFFFSFVCPTLMILYYYSQIVGHVFSHEKA------------------------------
210 17== IFLFSFVVPTLMILYYYSQIVGHVFNHEKA------------------------------
211 18== IFVFDYFLPAAIIVFSYVFIVKAIFAHEAA------------------------------
212 19== IFIFDFFLPASVIVFSYVFIVKAIFAHEAA------------------------------
213 20== YSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------------
214 21== YSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------------
215 22== YSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------------
216 23== YSLFVYYTPLFLICYSYWFIIAAVAAHEKA------------------------------
217 24== YSLFVYYTPLFMICYSYWFIIATVAAHEKA------------------------------
218 25== YGIWVYFVPLFLIIYSYWFIIQAVAAHEKN------------------------------
219 26== YGLAVYFLPLITMIYCYFFIVHAVAEHEKQ------------------------------
220 27== MYFCGFMLPIIIIAFCYFNIVMSVSNHEKE------------------------------
221 28== MFILGFFGPILIIFFCYFNIVMSVSNHEKE------------------------------
222 29== STAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------PGF-------
223 30== STAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------PGF-------
224 31=p STAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------PGF-------
225 32== STFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------------
226 33=p STFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------------
227 34== STVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSD
228 35=p STVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSD
229 36== ATASSFYVPVLIILILYWRIYQTARKRIR-------------------------------
230 * : * :
231
232 1== --------------------------AAAAQQ----------------------------
233 2== --------------------------AAAQQQ----------------------------
234 3== --------------------------AAAQQQ----------------------------
235 4=p --------------------------AAAQQQ----------------------------
236 5=p --------------------------AAAQQQ----------------------------
237 6== --------------------------AAKAQA----------------------------
238 7== --------------------------VAAQQQ----------------------------
239 8=opsin, --------------------------VAKQQK----------------------------
240 9== --------------------------VAKQQK----------------------------
241 10== --------------------------VAKQQK----------------------------
242 11== --------------------------VAAQQK----------------------------
243 12== --------------------------VAAQQK----------------------------
244 13== --------------------------AAAQQK----------------------------
245 14== --------------------------LRDQAKKM----------------------NVES
246 15== --------------------------LRDQAKKM----------------------NVDS
247 16== --------------------------LREQAKKM----------------------NVES
248 17== --------------------------LREQAKKM----------------------NVES
249 18== --------------------------MRAQAKKM----------------------NVST
250 19== --------------------------MRAQAKKM----------------------NVTN
251 20== --------------------------MREQAKKM----------------------NVKS
252 21== --------------------------MREQAKKM----------------------NVKS
253 22== --------------------------MREQAKKM----------------------NVKS
254 23== --------------------------MREQAKKM----------------------NVKS
255 24== --------------------------MRDQAKKM----------------------NVKS
256 25== --------------------------MREQAKKM----------------------NVAS
257 26== --------------------------LREQAKKM----------------------NVAS
258 27== --------------------------MAAMAKRL----------------------NAKE
259 28== --------------------------MAAMAKRL----------------------NAKE
260 29== --------------------------PRVEPD------------------------SVIA
261 30== --------------------------PRVQPE------------------------SVIS
262 31=p --------------------------PRVQPE------------------------SVIS
263 32== ---------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR-------
264 33=p ---------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG-------
265 34== CNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--------
266 35=p CNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--------
267 36== --------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGIAAAVVA
268
269
270 1== ------------------------------------------------------------
271 2== ------------------------------------------------------------
272 3== ------------------------------------------------------------
273 4=p ------------------------------------------------------------
274 5=p ------------------------------------------------------------
275 6== ------------------------------------------------------------
276 7== ------------------------------------------------------------
277 8=opsin, ------------------------------------------------------------
278 9== ------------------------------------------------------------
279 10== ------------------------------------------------------------
280 11== ------------------------------------------------------------
281 12== ------------------------------------------------------------
282 13== ------------------------------------------------------------
283 14== L-----------------------------------------------------------
284 15== L-----------------------------------------------------------
285 16== L-----------------------------------------------------------
286 17== L-----------------------------------------------------------
287 18== L-----------------------------------------------------------
288 19== L-----------------------------------------------------------
289 20== L-----------------------------------------------------------
290 21== L-----------------------------------------------------------
291 22== L-----------------------------------------------------------
292 23== L-----------------------------------------------------------
293 24== L-----------------------------------------------------------
294 25== L-----------------------------------------------------------
295 26== L-----------------------------------------------------------
296 27== L-----------------------------------------------------------
297 28== L-----------------------------------------------------------
298 29== L-----------------NGIVKLQ--------KEVEECAN------------------L
299 30== L-----------------NGVVKLQ--------KEVEECAN------------------L
300 31=p L-----------------NGVVKLQ--------KEVEECAN------------------L
301 32== --NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCA--
302 33=p --DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESGSNSYA--
303 34== --SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-------
304 35=p --SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-------
305 36== VIGRPLPTISETTTTGFTNVSS----NNTS---PEKQSCANGLEADPPTTGYGAVAAAYY
306
307
308 1== --------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-HQGS--
309 2== --------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-HQGS--
310 3== --------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-NKGA--
311 4=p --------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-NKGA--
312 5=p --------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-NKGA--
313 6== --------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-HRGE--
314 7== --------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-NRNH--
315 8=opsin, --------ESESTQK------AEKEVTRMVVVMVLAFC----------------------
316 9== --------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-NPGY--
317 10== --------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-NPGY--
318 11== --------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-NPGY--
319 12== --------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-NPGY--
320 13== --------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-HKGI--
321 14== -----RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-GDKT--
322 15== -----RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-GDKT--
323 16== -----RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-GDKS--
324 17== -----RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-GDKS--
325 18== -----RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-GDTS--
326 19== -----RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-GNAE--
327 20== -----RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-KF-E--
328 21== -----RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-KF-E--
329 22== -----RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-KF-E--
330 23== -----RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-KI-D--
331 24== -----RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-KI-D--
332 25== -----RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-NL-V--
333 26== -----RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-SSGT--
334 27== -----R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-GPAE--
335 28== -----R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-GPLE--
336 29== SRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCS
337 30== SRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCS
338 31=p SRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCS
339 32== PASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSC-
340 33=p PACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSC-
341 34== ------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-VDPE--
342 35=p ------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-VDPE--
343 36== PSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-CDCE--
344 * . :
345
346 1== DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC--------GKNPLGDDE-
347 2== NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC--------GKNPLGDDE-
348 3== DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC--------GKNPFGDEDV
349 4=p DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC--------GKNPLGDDE-
350 5=p AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC--------GKNPLGDEE-
351 6== EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMMKMV-C--------GKN-IEEDE-
352 7== GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV-C--------GKA-MTDES-
353 8=opsin, ------------------------------------------------------------
354 9== PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF----------GKK-VDDGS-
355 10== AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF----------GKK-VDDGS-
356 11== AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQLF----------GKK-VDDGS-
357 12== AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF----------GKK-VDDGS-
358 13== IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEMLCCG-----YQPQR-TGKAS-
359 14== LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL---------NEKAP-
360 15== LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI---------SEKAP-
361 16== LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV---------NEKSG-
362 17== LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV---------NEKSG-
363 18== GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HE-TETKS-
364 19== GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HE-KDPND-
365 20== GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-VDDGK-
366 21== GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-VDDGK-
367 22== GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-VDDGK-
368 23== GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GN-TDEPK-
369 24== GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GT-TDEPK-
370 25== KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------A-AEPSS-
371 26== RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GS-GESGS-
372 27== WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKE-CEDAN-
373 28== WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKE-TEDDK-
374 29== CIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR---------------
375 30== CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR---------------
376 31=p CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR---------------
377 32== HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC---------------
378 33=p HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC---------------
379 34== GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR---------------
380 35=p GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR---------------
381 36== -VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV---------------
382
383
384 1== -SGASTSKTEVSSVS-TSPVSPA-------------------------------------
385 2== -ASATASKTE------TSQVAPA-------------------------------------
386 3== SSTVSQSKTEVSSVS-SSQVSPA-------------------------------------
387 4=p SSTVSTSKTEVSS------VSPA-------------------------------------
388 5=p SSTVSTSKTEVSS------VSPA-------------------------------------
389 6== -ASTSSQVTQVSS------VAPEK------------------------------------
390 7== -DTCSSQKTEVSTVS-STQVGPN-------------------------------------
391 8=opsin, ------------------------------------------------------------
392 9== -ELSSASKTEVSSV---SSVSPA-------------------------------------
393 10== -ELSSASKTEVSSV---SSVSPA-------------------------------------
394 11== -EASTTSRTEVSSVS-NSSVAPA-------------------------------------
395 12== -EVST-SRTEVSSVS-NSSVSPA-------------------------------------
396 13== -PGTPGPHADVTAAGLRNKVMPAHPV----------------------------------
397 14== -ESSAVASTSTTQEP--QQTTAA-------------------------------------
398 15== -ESRAAISTSTTQEQ--QQTTAA-------------------------------------
399 16== -EISSAQST-TTQEQ--QQTTAA-------------------------------------
400 17== -EASSAQST-TTQEQ-TQQTSAA-------------------------------------
401 18== -NDDSQSNSTVAQDK-A-------------------------------------------
402 19== -VEENQSSNTQTQEK-S-------------------------------------------
403 20== -SSDAQSQA-TASEA-ESKA----------------------------------------
404 21== -SSDAQSQA-TASEA-ESKA----------------------------------------
405 22== -SSEAQSQA-TTSEA-ESKA----------------------------------------
406 23== -PDAPASDTETTSEA-DSKA----------------------------------------
407 24== -PDAPPSDTETTSEA-ESKD----------------------------------------
408 25== -DAVSTTSGTTTVTD-NEKSNA--------------------------------------
409 26== -DVKSEASATTTMEE-KPKIPEA-------------------------------------
410 27== -DAEEEVVASER--G-GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPP
411 28== -DAETEIPAGESSDA-APSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPP
412 29== -NINRKLSAAGMHEALKLAERPERPEFVL--------QNADY------------------
413 30== -NINRKLSAAGMHEALKLAERPERSEFVL--------QNSDH------------------
414 31=p -NINRKLSAAGMHEALKLAERPERSEFVL--------QNSDH------------------
415 32== -RQ---------------------------------------------------------
416 33=p -RR---------------------------------------------------------
417 34== -RGHR-------------------------------------------------------
418 35=p -RGHR-------------------------------------------------------
419 36== -RRRRA---------------PQ-------------------------------------
420
421
422 1== ----------------------------------------------------
423 2== ----------------------------------------------------
424 3== ----------------------------------------------------
425 4=p ----------------------------------------------------
426 5=p ----------------------------------------------------
427 6== ----------------------------------------------------
428 7== ----------------------------------------------------
429 8=opsin, ----------------------------------------------------
430 9== ----------------------------------------------------
431 10== ----------------------------------------------------
432 11== ----------------------------------------------------
433 12== ----------------------------------------------------
434 13== ----------------------------------------------------
435 14== ----------------------------------------------------
436 15== ----------------------------------------------------
437 16== ----------------------------------------------------
438 17== ----------------------------------------------------
439 18== ----------------------------------------------------
440 19== ----------------------------------------------------
441 20== ----------------------------------------------------
442 21== ----------------------------------------------------
443 22== ----------------------------------------------------
444 23== ----------------------------------------------------
445 24== ----------------------------------------------------
446 25== ----------------------------------------------------
447 26== ----------------------------------------------------
448 27== QGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA
449 28== QGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA
450 29== ---------------------------------------CRKKGHDS-----
451 30== ---------------------------------------CGKKGHDT-----
452 31=p ---------------------------------------CGKKGHDT-----
453 32== ----------------------------------------------------
454 33=p ----------------------------------------------------
455 34== ----------------------------------------------------
456 35=p ----------------------------------------------------
457 36== ----------------------------------------------------
458