Mercurial > repos > rnateam > mafft
diff test-data/mafft_explicit_amino_blosum80.clustal.aln @ 15:bf28a8cff401 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
| author | bgruening |
|---|---|
| date | Wed, 20 Mar 2024 07:34:52 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mafft_explicit_amino_blosum80.clustal.aln Wed Mar 20 07:34:52 2024 +0000 @@ -0,0 +1,458 @@ +CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.520) + + +1== ----------------------------------------MN------------------ +2== ----------------------------------------MN------------------ +3== ----------------------------------------MN------------------ +4=p ----------------------------------------MN------------------ +5=p ----------------------------------------MN------------------ +6== ----------------------------------------MK------------------ +7== ----------------------------------------MR------------------ +8=opsin, ------------------------------------------------------------ +9== ----------------------------------------MAQQWSLQRLAGRHPQDS-- +10== ----------------------------------------MAQQWSLQRLAGRHPQDS-- +11== ----------------------------------------MTEAWNVAVFAARRSRDD-- +12== ----------------------------------------MA-AWEAAFAARRRHEE--- +13== ----------------------------------------MS------------------ +14== ----------MESGNVS-------------SSLFGNVSTALR------------------ +15== ----------MEYHNVS-------------SVL-GNVSSVLR------------------ +16== ----------ME-------------------PLCNASEPPLR------------------ +17== ----------MD-------------------ALCNASEPPLR------------------ +18== --------------------------------MTNATGPQMA------------------ +19== --------------------------------MANVTGPQMA------------------ +20== ----------ME---SF-------------AVAAAQLGPHFA------------------ +21== ----------ME---SF-------------AVAAAQLGPHFA------------------ +22== ----------MD---SF-------------AAVATQLGPQFA------------------ +23== -----MERSHLP---ET-------------PFDLAHSGPRFQ------------------ +24== -----MERSLLP---EP-------------PLAMALLGPRFE------------------ +25== --------------------------------MIAVSGPSYE------------------ +26== ----------------------------------MANQLSYS------------------ +27== ---------------------------------------MVE------------------ +28== ----------------------------------------MG------------------ +29== ---------MMDVNSSGRPDLYGHLRSFL-LPEVGRGLPDLSPDGGADPVAG-SWAPHLL +30== -------------------------------------------------------MPHLL +31=p -------------------------------------------------------MPHLL +32== ----------MDVLSP-------------------------------------------- +33=p ----------MDVFSF-------------------------------------------- +34== MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYG---L +35=p MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYG---L +36== -MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGWEPNWNVTVVPNTTW----- + + +1== -----GTE--GDN-FYVP----FSNKTGLARSPYEYPQY-YLAEPWK-----------YS +2== -----GTE--GPN-FYVP----FSNITGVVRSPFEQPQY-YLAEPWQ-----------FS +3== -----GTE--GIN-FYVP----MSNKTGVVRSPFEYPQY-YLAEPWK-----------YR +4=p -----GTE--GKN-FYVP----MSNRTGLVRSPFEYPQY-YLAEPWQ-----------FK +5=p -----GTE--GNN-FYVP----LSNRTGLVRSPFEYPQY-YLAEPWQ-----------FK +6== -----QVPEFHED-FYIPIPLDINNLSAY--SPFLVPQD-HLGNQGI-----------FM +7== -----KMS--EEE-FYL-----FKNISSV--GPWDGPQY-HIAPVWA-----------FY +8=opsin, ------------------------------------------------------------ +9== ----YEDSTQSSI-FT------YTNSNST-RGPFEGPNY-HIAPRWV-----------YH +10== ----YEDSTQSSI-FT------YTNSNST-RGPFEGPNY-HIAPRWV-----------YH +11== -----DDTTRGSV-FT------YTNTNNT-RGPFEGPNY-HIAPRWV-----------YN +12== -----EDTTRDSV-FT------YTNSNNT-RGPFEGPNY-HIAPRWV-----------YN +13== -----SNSSQAP-------------PNGT-PGPFDGPQWPYQAPQST-----------YV +14== -----PEARLSA-----------ETRLLGWNVPPEELR--HIPEHWLT--YPEPPESMNY +15== -----PDARLSA-----------ESRLLGWNVPPDELR--HIPEHWLI--YPEPPESMNY +16== -----PEAR-SSG---N-----GDLQFLGWNVPPDQIQ--YIPEHWLT--QLEPPASMHY +17== -----PEARMSSG---S-----DELQFLGWNVPPDQIQ--YIPEHWLT--QLEPPASMHY +18== -----YYGAASMD-FGY-----PEGVSIVDFVRPEIKP--YVHQHWYN--YPPVNPMWHY +19== -----FYGSGAAT-FGY-----PEGMTVADFVPDRVKH--MVLDHWYN--YPPVNPMWHY +20== -----PLS----------------NGSVVDKVTPDMAH--LISPYWNQ--FPAMDPIWAK +21== -----PLS----------------NGSVVDKVTPDMAH--LISPYWNQ--FPAMDPIWAK +22== -----APS----------------NGSVVDKVTPDMAH--LISPYWDQ--FPAMDPIWAK +23== -----AQSSG--------------NGSVLDNVLPDMAH--LVNPYWSR--FAPMDPMMSK +24== -----AQTGG--------------NRSVLDNVLPDMAP--LVNPHWSR--FAPMDPTMSK +25== -----AFSYGGQARF--------NNQTVVDKVPPDMLH--LIDANWYQ--YPPLNPMWHG +26== -----SLGWPYQP-----------NASVVDTMPKEMLY--MIHEHWYA--FPPMNPLWYS +27== -----STTLVNQT-WWY-------NPTVD------------IHPHWAK--FDPIPDAVYY +28== -----RDLRDNET-WWY-------NPSIV------------VHPHWRE--FDQVPDAVYY +29== S---EVTASPAPT-WDAP----PDNASGCGEQIN----------------YGRVE---KV +30== SGFLEVTASPAPT-WDAP----PDNVSGCGEQIN----------------YGRVE---KV +31=p SGFLEVTASPAPT-WDAP----PDNVSGCGEQIN----------------YGRVE---KV +32== -GQGNNTTSPPAP-FET-----GGNTTGISDVT-----------------VSYQ-----V +33=p -GQGNNTTASQEP-FGT-----GGNVTSISDVT-----------------FSYQ-----V +34== TGQFINGSHSSRS-RDNA----SANDTSATNMTDD--------RYWSLTVYSHEH---LV +35=p TGQFINGSHSSRS-RDNA----SANDTSATNMTDD--------RYWSLTVYSHEH---LV +36== -------WQASAP-FDTP----AALVRAAAK----------------------------- + + +1== ALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYT +2== MLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYT +3== LVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYT +4=p ILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYT +5=p LLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYT +6== AMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYS +7== LQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVA +8=opsin, --------------------------------------------DLAETVIA-STISIVN +9== LTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVN +10== LTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVN +11== LVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFN +12== LTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVIN +13== GVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSN +14== LLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYN +15== LLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYN +16== MLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--N +17== MLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYN +18== LLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYN +19== LLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYN +20== ILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGIN +21== ILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGIN +22== ILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGIN +23== ILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIIN +24== ILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIIN +25== ILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVIN +26== ILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSN +27== SVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTIS +28== SLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTIS +29== VIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVT +30== VIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVT +31=p VIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVT +32== ITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALY +33=p ITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALY +34== LTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVS +35=p LTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVS +36== --AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVY + . + +1== SMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FRFGNTHA +2== SLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FRFGENHA +3== AWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FRFSATHA +4=p AIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSSHA +5=p AIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSTHA +6== FFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FTFKTPHA +7== SCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FRFSSKHA +8=opsin, QVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLA +9== QVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VRFDAKLA +10== QVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLA +11== QIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IKFDSKLA +12== QIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IKFDGKLA +13== NIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQFQRRHA +14== SFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKA +15== SFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKA +16== SFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKA +17== SFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKA +18== CFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PKLTTGKA +19== CFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PKLTQGKA +20== LYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLA +21== LYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLA +22== LYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLA +23== FYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTS +24== FYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTS +25== CYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGA +26== CFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-APLTHKKA +27== AFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRA +28== CFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRA +29== DLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCM +30== DLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCM +31=p DLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCM +32== QVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRA +33=p QVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRA +34== EIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRI +35=p EIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRI +36== EVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRV + : : * : : :*: : : + +1== IMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNNESYVVY +2== IMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNNESFVIY +3== MMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHNESYVLY +4=p FAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNNESYVIY +5=p SAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNNESYVLY +6== IAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNNESYVMF +7== LTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRSESYTWF +8=opsin, IVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIV +9== IVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIV +10== IVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIV +11== IIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGCQSFMLT +12== VAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVV +13== VSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--NSYILS +14== IAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVAC +15== IAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVAC +16== VIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGT +17== VIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGT +18== VVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNTFSYNIF +19== TFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNTITYNIC +20== LGKM---------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIF +21== LGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIF +22== LGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIF +23== IMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNPRSYLIT +24== IMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNPRSYLIT +25== LIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLSASYLVC +26== TLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSSASYVVI +27== FLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPSTRSFILC +28== FIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTTRSNILC +29== AKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIY +30== AKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIY +31=p AKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIY +32== AALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIY +33=p AALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIY +34== LLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIF +35=p LLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIF +36== GMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV----------GYQIF + : + +1== MFVVHFLVPFVIIFFCYGRLLCTV----KE------------------------------ +2== MFVVHFTIPMIVIFFCYGQLVFTV----KE------------------------------ +3== MFVIHFIIPVVVIFFSYGRLICKV----RE------------------------------ +4=p MFVCHFILPVAVIFFTYGRLVCTV----KA------------------------------ +5=p MFICHFILPVTIIFFTYGRLVCTV----KA------------------------------ +6== LFCFCFAVPFGTIVFCYGQLLITL----KL------------------------------ +7== LFIFCFIVPLSLICFSYTQLLRAL----KA------------------------------ +8=opsin, LMVTCCITPLSIIVLCYLQVWLAI----RA------------------------------ +9== LMVTCCITPLSIIVLCYLQVWLAI----RA------------------------------ +10== LMVTCCIIPLAIIMLCYLQVWLAI----RA------------------------------ +11== LMITCCFLPLFIIIVCYLQVWMAI----RA------------------------------ +12== LMVTCCFFPLAIIILCYLQVWLAI----RA------------------------------ +13== LFVTCFVLPLSLILFSYTNLLLTL----RA------------------------------ +14== IFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------------ +15== IFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------------ +16== IFFFSFVCPTLMILYYYSQIVGHVFSHEKA------------------------------ +17== IFLFSFVVPTLMILYYYSQIVGHVFNHEKA------------------------------ +18== IFVFDYFLPAAIIVFSYVFIVKAIFAHEAA------------------------------ +19== IFIFDFFLPASVIVFSYVFIVKAIFAHEAA------------------------------ +20== YSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------------ +21== YSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------------ +22== YSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------------ +23== YSLFVYYTPLFLICYSYWFIIAAVAAHEKA------------------------------ +24== YSLFVYYTPLFMICYSYWFIIATVAAHEKA------------------------------ +25== YGIWVYFVPLFLIIYSYWFIIQAVAAHEKN------------------------------ +26== YGLAVYFLPLITMIYCYFFIVHAVAEHEKQ------------------------------ +27== MYFCGFMLPIIIIAFCYFNIVMSVSNHEKE------------------------------ +28== MFILGFFGPILIIFFCYFNIVMSVSNHEKE------------------------------ +29== STAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------PGF------- +30== STAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------PGF------- +31=p STAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------------PGF------- +32== STFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------------ +33=p STFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------------ +34== STVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSD +35=p STVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTEYSVVSD +36== ATASSFYVPVLIILILYWRIYQTARKRIR------------------------------- + * : * : + +1== --------------------------AAAAQQ---------------------------- +2== --------------------------AAAQQQ---------------------------- +3== --------------------------AAAQQQ---------------------------- +4=p --------------------------AAAQQQ---------------------------- +5=p --------------------------AAAQQQ---------------------------- +6== --------------------------AAKAQA---------------------------- +7== --------------------------VAAQQQ---------------------------- +8=opsin, --------------------------VAKQQK---------------------------- +9== --------------------------VAKQQK---------------------------- +10== --------------------------VAKQQK---------------------------- +11== --------------------------VAAQQK---------------------------- +12== --------------------------VAAQQK---------------------------- +13== --------------------------AAAQQK---------------------------- +14== --------------------------LRDQAKKM----------------------NVES +15== --------------------------LRDQAKKM----------------------NVDS +16== --------------------------LREQAKKM----------------------NVES +17== --------------------------LREQAKKM----------------------NVES +18== --------------------------MRAQAKKM----------------------NVST +19== --------------------------MRAQAKKM----------------------NVTN +20== --------------------------MREQAKKM----------------------NVKS +21== --------------------------MREQAKKM----------------------NVKS +22== --------------------------MREQAKKM----------------------NVKS +23== --------------------------MREQAKKM----------------------NVKS +24== --------------------------MRDQAKKM----------------------NVKS +25== --------------------------MREQAKKM----------------------NVAS +26== --------------------------LREQAKKM----------------------NVAS +27== --------------------------MAAMAKRL----------------------NAKE +28== --------------------------MAAMAKRL----------------------NAKE +29== --------------------------PRVEPD------------------------SVIA +30== --------------------------PRVQPE------------------------SVIS +31=p --------------------------PRVQPE------------------------SVIS +32== ---------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR------- +33=p ---------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG------- +34== CNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS-------- +35=p CNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS-------- +36== --------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGIAAAVVA + + +1== ------------------------------------------------------------ +2== ------------------------------------------------------------ +3== ------------------------------------------------------------ +4=p ------------------------------------------------------------ +5=p ------------------------------------------------------------ +6== ------------------------------------------------------------ +7== ------------------------------------------------------------ +8=opsin, ------------------------------------------------------------ +9== ------------------------------------------------------------ +10== ------------------------------------------------------------ +11== ------------------------------------------------------------ +12== ------------------------------------------------------------ +13== ------------------------------------------------------------ +14== L----------------------------------------------------------- +15== L----------------------------------------------------------- +16== L----------------------------------------------------------- +17== L----------------------------------------------------------- +18== L----------------------------------------------------------- +19== L----------------------------------------------------------- +20== L----------------------------------------------------------- +21== L----------------------------------------------------------- +22== L----------------------------------------------------------- +23== L----------------------------------------------------------- +24== L----------------------------------------------------------- +25== L----------------------------------------------------------- +26== L----------------------------------------------------------- +27== L----------------------------------------------------------- +28== L----------------------------------------------------------- +29== L-----------------NGIVKLQ--------KEVEECAN------------------L +30== L-----------------NGVVKLQ--------KEVEECAN------------------L +31=p L-----------------NGVVKLQ--------KEVEECAN------------------L +32== --NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAGPTPCA-- +33=p --DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESGSNSYA-- +34== --SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS------- +35=p --SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS------- +36== VIGRPLPTISETTTTGFTNVSS----NNTS---PEKQSCANGLEADPPTTGYGAVAAAYY + + +1== --------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-HQGS-- +2== --------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-HQGS-- +3== --------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-NKGA-- +4=p --------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-NKGA-- +5=p --------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-NKGA-- +6== --------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-HRGE-- +7== --------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-NRNH-- +8=opsin, --------ESESTQK------AEKEVTRMVVVMVLAFC---------------------- +9== --------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-NPGY-- +10== --------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-NPGY-- +11== --------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-NPGY-- +12== --------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-NPGY-- +13== --------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-HKGI-- +14== -----RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-GDKT-- +15== -----RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-GDKT-- +16== -----RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-GDKS-- +17== -----RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-GDKS-- +18== -----RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-GDTS-- +19== -----RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-GNAE-- +20== -----RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-KF-E-- +21== -----RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-KF-E-- +22== -----RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-KF-E-- +23== -----RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-KI-D-- +24== -----RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-KI-D-- +25== -----RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-NL-V-- +26== -----RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-SSGT-- +27== -----R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-GPAE-- +28== -----R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-GPLE-- +29== SRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCS +30== SRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCS +31=p SRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCS +32== PASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSC- +33=p PACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSC- +34== ------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-VDPE-- +35=p ------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-VDPE-- +36== PSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-CDCE-- + * . : + +1== DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC--------GKNPLGDDE- +2== NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC--------GKNPLGDDE- +3== DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC--------GKNPFGDEDV +4=p DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC--------GKNPLGDDE- +5=p AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC--------GKNPLGDEE- +6== EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMMKMV-C--------GKN-IEEDE- +7== GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV-C--------GKA-MTDES- +8=opsin, ------------------------------------------------------------ +9== PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF----------GKK-VDDGS- +10== AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF----------GKK-VDDGS- +11== AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQLF----------GKK-VDDGS- +12== AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF----------GKK-VDDGS- +13== IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEMLCCG-----YQPQR-TGKAS- +14== LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL---------NEKAP- +15== LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI---------SEKAP- +16== LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV---------NEKSG- +17== LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV---------NEKSG- +18== GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HE-TETKS- +19== GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HE-KDPND- +20== GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-VDDGK- +21== GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-VDDGK- +22== GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-VDDGK- +23== GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GN-TDEPK- +24== GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GT-TDEPK- +25== KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------A-AEPSS- +26== RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GS-GESGS- +27== WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKE-CEDAN- +28== WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKE-TEDDK- +29== CIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR--------------- +30== CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR--------------- +31=p CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR--------------- +32== HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC--------------- +33=p HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC--------------- +34== GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR--------------- +35=p GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR--------------- +36== -VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV--------------- + + +1== -SGASTSKTEVSSVS-TSPVSPA------------------------------------- +2== -ASATASKTE------TSQVAPA------------------------------------- +3== SSTVSQSKTEVSSVS-SSQVSPA------------------------------------- +4=p SSTVSTSKTEVSS------VSPA------------------------------------- +5=p SSTVSTSKTEVSS------VSPA------------------------------------- +6== -ASTSSQVTQVSS------VAPEK------------------------------------ +7== -DTCSSQKTEVSTVS-STQVGPN------------------------------------- +8=opsin, ------------------------------------------------------------ +9== -ELSSASKTEVSSV---SSVSPA------------------------------------- +10== -ELSSASKTEVSSV---SSVSPA------------------------------------- +11== -EASTTSRTEVSSVS-NSSVAPA------------------------------------- +12== -EVST-SRTEVSSVS-NSSVSPA------------------------------------- +13== -PGTPGPHADVTAAGLRNKVMPAHPV---------------------------------- +14== -ESSAVASTSTTQEP--QQTTAA------------------------------------- +15== -ESRAAISTSTTQEQ--QQTTAA------------------------------------- +16== -EISSAQST-TTQEQ--QQTTAA------------------------------------- +17== -EASSAQST-TTQEQ-TQQTSAA------------------------------------- +18== -NDDSQSNSTVAQDK-A------------------------------------------- +19== -VEENQSSNTQTQEK-S------------------------------------------- +20== -SSDAQSQA-TASEA-ESKA---------------------------------------- +21== -SSDAQSQA-TASEA-ESKA---------------------------------------- +22== -SSEAQSQA-TTSEA-ESKA---------------------------------------- +23== -PDAPASDTETTSEA-DSKA---------------------------------------- +24== -PDAPPSDTETTSEA-ESKD---------------------------------------- +25== -DAVSTTSGTTTVTD-NEKSNA-------------------------------------- +26== -DVKSEASATTTMEE-KPKIPEA------------------------------------- +27== -DAEEEVVASER--G-GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPP +28== -DAETEIPAGESSDA-APSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPP +29== -NINRKLSAAGMHEALKLAERPERPEFVL--------QNADY------------------ +30== -NINRKLSAAGMHEALKLAERPERSEFVL--------QNSDH------------------ +31=p -NINRKLSAAGMHEALKLAERPERSEFVL--------QNSDH------------------ +32== -RQ--------------------------------------------------------- +33=p -RR--------------------------------------------------------- +34== -RGHR------------------------------------------------------- +35=p -RGHR------------------------------------------------------- +36== -RRRRA---------------PQ------------------------------------- + + +1== ---------------------------------------------------- +2== ---------------------------------------------------- +3== ---------------------------------------------------- +4=p ---------------------------------------------------- +5=p ---------------------------------------------------- +6== ---------------------------------------------------- +7== ---------------------------------------------------- +8=opsin, ---------------------------------------------------- +9== ---------------------------------------------------- +10== ---------------------------------------------------- +11== ---------------------------------------------------- +12== ---------------------------------------------------- +13== ---------------------------------------------------- +14== ---------------------------------------------------- +15== ---------------------------------------------------- +16== ---------------------------------------------------- +17== ---------------------------------------------------- +18== ---------------------------------------------------- +19== ---------------------------------------------------- +20== ---------------------------------------------------- +21== ---------------------------------------------------- +22== ---------------------------------------------------- +23== ---------------------------------------------------- +24== ---------------------------------------------------- +25== ---------------------------------------------------- +26== ---------------------------------------------------- +27== QGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA +28== QGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA +29== ---------------------------------------CRKKGHDS----- +30== ---------------------------------------CGKKGHDT----- +31=p ---------------------------------------CGKKGHDT----- +32== ---------------------------------------------------- +33=p ---------------------------------------------------- +34== ---------------------------------------------------- +35=p ---------------------------------------------------- +36== ---------------------------------------------------- +