Mercurial > repos > rnateam > mafft
comparison test-data/mafft_nwns_result.aln @ 15:bf28a8cff401 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
| author | bgruening |
|---|---|
| date | Wed, 20 Mar 2024 07:34:52 +0000 |
| parents | 6f28e90db932 |
| children |
comparison
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| 14:6f28e90db932 | 15:bf28a8cff401 |
|---|---|
| 1 CLUSTAL format alignment by MAFFT NW-NS-2 (v7.455) | |
| 2 | |
| 3 | |
| 4 1== ----------------------------------------MNG----------------T | |
| 5 2== ----------------------------------------MNG----------------T | |
| 6 3== ----------------------------------------MNG----------------T | |
| 7 4=p ----------------------------------------MNG----------------T | |
| 8 5=p ----------------------------------------MNG----------------T | |
| 9 6== ----------------------------------------MKQ----------------V | |
| 10 7== ----------------------------------------MRK----------------M | |
| 11 8=opsin, ------------------------------------------------------------ | |
| 12 9== ----------------------------------------MAQQWSLQRLAGRHPQDSYE | |
| 13 10== ----------------------------------------MAQQWSLQRLAGRHPQDSYE | |
| 14 11== ----------------------------------------MTEAWNVAVFAARRSRDD-D | |
| 15 12== ----------------------------------------MAA-WEAAFAARRRHEE--E | |
| 16 13== ----------------------------------------MS-----------------S | |
| 17 14== ----------MESGNVSS------------SLFGNVST-ALRP----------------E | |
| 18 15== ----------MEYHNVSS------------VL-GNVSS-VLRP----------------D | |
| 19 16== ----------ME------------------PL-CNASEPPLRP----------------E | |
| 20 17== ----------MD------------------AL-CNASEPPLRP----------------E | |
| 21 18== --------------------------------MTNATGPQMAY----------------Y | |
| 22 19== --------------------------------MANVTGPQMAF----------------Y | |
| 23 20== ----------ME----SF------------AVAAAQLGPHFAP----------------L | |
| 24 21== ----------ME----SF------------AVAAAQLGPHFAP----------------L | |
| 25 22== ----------MD----SF------------AAVATQLGPQFAA----------------P | |
| 26 23== -----MERSHLP----ET------------PFDLAHSGPRFQA----------------Q | |
| 27 24== -----MERSLLP----EP------------PLAMALLGPRFEA----------------Q | |
| 28 25== --------------------------------MIAVSGPSYEA----------------F | |
| 29 26== ----------------------------------MANQLSYSS----------------L | |
| 30 27== ---------------------------------------MVES----------------T | |
| 31 28== ----------------------------------------MGR----------------D | |
| 32 29== ---------MMDVNSSGRPDLYGHLRSFL-LPEVGRGLPDLSPDGGA------------D | |
| 33 30== ------------------------------------------------------------ | |
| 34 31=p ------------------------------------------------------------ | |
| 35 32== ----------MDVLSP-------------------------------------------- | |
| 36 33=p ----------MDVFSF-------------------------------------------- | |
| 37 34== MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLV------------T | |
| 38 35=p MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLV------------T | |
| 39 36== -MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGWEPNWNV------------T | |
| 40 | |
| 41 | |
| 42 1== E--G--DNFYVP----FSNKTGLARSPYEYPQY-------YLAEPWK---------YSAL | |
| 43 2== E--G--PNFYVP----FSNITGVVRSPFEQPQY-------YLAEPWQ---------FSML | |
| 44 3== E--G--INFYVP----MSNKTGVVRSPFEYPQY-------YLAEPWK---------YRLV | |
| 45 4=p E--G--KNFYVP----MSNRTGLVRSPFEYPQY-------YLAEPWQ---------FKIL | |
| 46 5=p E--G--NNFYVP----LSNRTGLVRSPFEYPQY-------YLAEPWQ---------FKLL | |
| 47 6== PEFH--EDFYIPIPLDINNLS--AYSPFLVPQD-------HLGNQGI---------FMAM | |
| 48 7== S--E--EEFYL-----FKNIS--SVGPWDGPQY-------HIAPVWA---------FYLQ | |
| 49 8=opsin, ------------------------------------------------------------ | |
| 50 9== DSTQ--SSIFT-----YTNSNS-TRGPFEGPNY-------HIAPRWV---------YHLT | |
| 51 10== DSTQ--SSIFT-----YTNSNS-TRGPFEGPNY-------HIAPRWV---------YHLT | |
| 52 11== DTTR--GSVFT-----YTNTNN-TRGPFEGPNY-------HIAPRWV---------YNLV | |
| 53 12== DTTR--DSVFT-----YTNSNN-TRGPFEGPNY-------HIAPRWV---------YNLT | |
| 54 13== NSSQ--AP-----------PNG-TPGPFDGPQW------PYQAPQST---------YVGV | |
| 55 14== ARLS--A----------ETRLLGWNVPPEELR--------HIPEHWLTYPEPPESMNYLL | |
| 56 15== ARLS--A----------ESRLLGWNVPPDELR--------HIPEHWLIYPEPPESMNYLL | |
| 57 16== AR-S--SG---N----GDLQFLGWNVPPDQIQ--------YIPEHWLTQLEPPASMHYML | |
| 58 17== ARMS--SG---S----DELQFLGWNVPPDQIQ--------YIPEHWLTQLEPPASMHYML | |
| 59 18== GAAS--MD-FGY----PEGVSIVDFVRPEIKP--------YVHQHWYNYPPVNPMWHYLL | |
| 60 19== GSGA--AT-FGY----PEGMTVADFVPDRVKH--------MVLDHWYNYPPVNPMWHYLL | |
| 61 20== S-----------------NGSVVDKVTPDMAH--------LISPYWNQFPAMDPIWAKIL | |
| 62 21== S-----------------NGSVVDKVTPDMAH--------LISPYWNQFPAMDPIWAKIL | |
| 63 22== S-----------------NGSVVDKVTPDMAH--------LISPYWDQFPAMDPIWAKIL | |
| 64 23== SSG---------------NGSVLDNVLPDMAH--------LVNPYWSRFAPMDPMMSKIL | |
| 65 24== TGG---------------NRSVLDNVLPDMAP--------LVNPHWSRFAPMDPTMSKIL | |
| 66 25== SYGG--QARF-------NNQTVVDKVPPDMLH--------LIDANWYQYPPLNPMWHGIL | |
| 67 26== GWPY--QP----------NASVVDTMPKEMLY--------MIHEHWYAFPPMNPLWYSIL | |
| 68 27== TLVN--QT-WWY------NPTVD------------------IHPHWAKFDPIPDAVYYSV | |
| 69 28== LRDN--ET-WWY------NPSIV------------------VHPHWREFDQVPDAVYYSL | |
| 70 29== PVAGSWAPHLLS------EVTASPAPTWDAPPDNASGCGEQIN--------YGRVEKVVI | |
| 71 30== ------MPHLLS---GFLEVTASPAPTWDAPPDNVSGCGEQIN--------YGRVEKVVI | |
| 72 31=p ------MPHLLS---GFLEVTASPAPTWDAPPDNVSGCGEQIN--------YGRVEKVVI | |
| 73 32== ---------------GQGNNTTSPPAPFET-GGNTTGISDVT---------VSYQ--VIT | |
| 74 33=p ---------------GQGNNTTASQEPFGT-GGNVTSISDVT---------FSYQ--VIT | |
| 75 34== SDFN--DSYGLT---GQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLT | |
| 76 35=p SDFN--DSYGLT---GQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLT | |
| 77 36== VVPN--TTWW------------QASAPFDTPAALVRAAAK-------------------- | |
| 78 | |
| 79 | |
| 80 1== AAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYTSM | |
| 81 2== AAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYTSL | |
| 82 3== CCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYTAW | |
| 83 4=p ALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYTAI | |
| 84 5=p AVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYTAI | |
| 85 6== SVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYSFF | |
| 86 7== AAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVASC | |
| 87 8=opsin, ------------------------------------------DLAETVIA-STISIVNQV | |
| 88 9== SVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVNQV | |
| 89 10== SVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVNQV | |
| 90 11== SFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFNQI | |
| 91 12== SVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVINQI | |
| 92 13== AVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSNNI | |
| 93 14== GTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYNSF | |
| 94 15== GTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYNSF | |
| 95 16== GVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--NSF | |
| 96 17== GVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYNSF | |
| 97 18== GVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYNCF | |
| 98 19== GVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYNCF | |
| 99 20== TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY | |
| 100 21== TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY | |
| 101 22== TAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY | |
| 102 23== GLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFY | |
| 103 24== GLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFY | |
| 104 25== GFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVINCY | |
| 105 26== GVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSNCF | |
| 106 27== GIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTISAF | |
| 107 28== GIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCF | |
| 108 29== GSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL | |
| 109 30== GSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL | |
| 110 31=p GSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL | |
| 111 32== SLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQV | |
| 112 33=p SLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQV | |
| 113 34== SVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEI | |
| 114 35=p SVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEI | |
| 115 36== AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVYEV | |
| 116 . | |
| 117 | |
| 118 1== N-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FRFGNTHAIM | |
| 119 2== H-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FRFGENHAIM | |
| 120 3== N-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FRFSATHAMM | |
| 121 4=p N-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSSHAFA | |
| 122 5=p N-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSTHASA | |
| 123 6== N-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FTFKTPHAIA | |
| 124 7== N-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FRFSSKHALT | |
| 125 8=opsin, S-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIV | |
| 126 9== Y-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VRFDAKLAIV | |
| 127 10== S-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIV | |
| 128 11== F-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IKFDSKLAII | |
| 129 12== S-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IKFDGKLAVA | |
| 130 13== N-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQFQRRHAVS | |
| 131 14== H-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKAIA | |
| 132 15== H-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKAIA | |
| 133 16== H-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVI | |
| 134 17== H-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVI | |
| 135 18== SGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PKLTTGKAVV | |
| 136 19== SGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PKLTQGKATF | |
| 137 20== F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG | |
| 138 21== F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG | |
| 139 22== F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG | |
| 140 23== Y-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIM | |
| 141 24== Y-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIM | |
| 142 25== Y-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGALI | |
| 143 26== A-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-APLTHKKATL | |
| 144 27== M-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRAFL | |
| 145 28== L-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFI | |
| 146 29== IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK | |
| 147 30== IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK | |
| 148 31=p IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK | |
| 149 32== L-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA | |
| 150 33=p L-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA | |
| 151 34== S-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILL | |
| 152 35=p S-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILL | |
| 153 36== V-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRVGM | |
| 154 : : * : : :*: : : | |
| 155 | |
| 156 1== GVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNNESYVVYMF | |
| 157 2== GVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMF | |
| 158 3== GIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHNESYVLYMF | |
| 159 4=p GIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNNESYVIYMF | |
| 160 5=p GIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNNESYVLYMF | |
| 161 6== GCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNNESYVMFLF | |
| 162 7== VVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLF | |
| 163 8=opsin, GIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM | |
| 164 9== GIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM | |
| 165 10== GIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM | |
| 166 11== GIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGCQSFMLTLM | |
| 167 12== GILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVVLM | |
| 168 13== GCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--NSYILSLF | |
| 169 14== MIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIF | |
| 170 15== MIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIF | |
| 171 16== MNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIF | |
| 172 17== MNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIF | |
| 173 18== FALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNTFSYNIFIF | |
| 174 19== MCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNTITYNICIF | |
| 175 20== KM---------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIFYS | |
| 176 21== KIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYS | |
| 177 22== KIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYS | |
| 178 23== KILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNPRSYLITYS | |
| 179 24== KIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNPRSYLITYS | |
| 180 25== RIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLSASYLVCYG | |
| 181 26== LLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSSASYVVIYG | |
| 182 27== MIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPSTRSFILCMY | |
| 183 28== MIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTTRSNILCMF | |
| 184 29== MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST | |
| 185 30== MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST | |
| 186 31=p MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST | |
| 187 32== LISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIYST | |
| 188 33=p LISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIYST | |
| 189 34== MIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFST | |
| 190 35=p MIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFST | |
| 191 36== MIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV----------GYQIFAT | |
| 192 : | |
| 193 | |
| 194 1== VVHFLVPFVIIFFCYGRLLCTV----KEAAAAQQ-------------------------- | |
| 195 2== VVHFTIPMIVIFFCYGQLVFTV----KEAAAQQQ-------------------------- | |
| 196 3== VIHFIIPVVVIFFSYGRLICKV----REAAAQQQ-------------------------- | |
| 197 4=p VCHFILPVAVIFFTYGRLVCTV----KAAAAQQQ-------------------------- | |
| 198 5=p ICHFILPVTIIFFTYGRLVCTV----KAAAAQQQ-------------------------- | |
| 199 6== CFCFAVPFGTIVFCYGQLLITL----KLAAKAQA-------------------------- | |
| 200 7== IFCFIVPLSLICFSYTQLLRAL----KAVAAQQQ-------------------------- | |
| 201 8=opsin, VTCCITPLSIIVLCYLQVWLAI----RAVAKQQK-------------------------- | |
| 202 9== VTCCITPLSIIVLCYLQVWLAI----RAVAKQQK-------------------------- | |
| 203 10== VTCCIIPLAIIMLCYLQVWLAI----RAVAKQQK-------------------------- | |
| 204 11== ITCCFLPLFIIIVCYLQVWMAI----RAVAAQQK-------------------------- | |
| 205 12== VTCCFFPLAIIILCYLQVWLAI----RAVAAQQK-------------------------- | |
| 206 13== VTCFVLPLSLILFSYTNLLLTL----RAAAAQQK-------------------------- | |
| 207 14== FFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK------------------------- | |
| 208 15== FFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK------------------------- | |
| 209 16== FFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKK------------------------- | |
| 210 17== LFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKK------------------------- | |
| 211 18== VFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKK------------------------- | |
| 212 19== IFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKK------------------------- | |
| 213 20== IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK------------------------- | |
| 214 21== IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK------------------------- | |
| 215 22== IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK------------------------- | |
| 216 23== LFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKK------------------------- | |
| 217 24== LFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKK------------------------- | |
| 218 25== IWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKK------------------------- | |
| 219 26== LAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKK------------------------- | |
| 220 27== FCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKR------------------------- | |
| 221 28== ILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKR------------------------- | |
| 222 29== AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF---------------------- | |
| 223 30== AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF---------------------- | |
| 224 31=p AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF---------------------- | |
| 225 32== FGAFYIPLLLMLVLYGRIF-------RAARFRIRK------------------------- | |
| 226 33=p FGAFYIPLLLMLVLYGRIF-------RAARFRIRK------------------------- | |
| 227 34== VGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETTLVASPKTEY | |
| 228 35=p VGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETTLVASPKTEY | |
| 229 36== ASSFYVPVLIILILYWRIY-------QTARKRIR-------------------------- | |
| 230 * : * : | |
| 231 | |
| 232 1== ------------------------------------------------------------ | |
| 233 2== ------------------------------------------------------------ | |
| 234 3== ------------------------------------------------------------ | |
| 235 4=p ------------------------------------------------------------ | |
| 236 5=p ------------------------------------------------------------ | |
| 237 6== ------------------------------------------------------------ | |
| 238 7== ------------------------------------------------------------ | |
| 239 8=opsin, ------------------------------------------------------------ | |
| 240 9== ------------------------------------------------------------ | |
| 241 10== ------------------------------------------------------------ | |
| 242 11== ------------------------------------------------------------ | |
| 243 12== ------------------------------------------------------------ | |
| 244 13== ------------------------------------------------------------ | |
| 245 14== --------------------------------------------------MN-------- | |
| 246 15== --------------------------------------------------MN-------- | |
| 247 16== --------------------------------------------------MN-------- | |
| 248 17== --------------------------------------------------MN-------- | |
| 249 18== --------------------------------------------------MN-------- | |
| 250 19== --------------------------------------------------MN-------- | |
| 251 20== --------------------------------------------------MN-------- | |
| 252 21== --------------------------------------------------MN-------- | |
| 253 22== --------------------------------------------------MN-------- | |
| 254 23== --------------------------------------------------MN-------- | |
| 255 24== --------------------------------------------------MN-------- | |
| 256 25== --------------------------------------------------MN-------- | |
| 257 26== --------------------------------------------------MN-------- | |
| 258 27== --------------------------------------------------LN-------- | |
| 259 28== --------------------------------------------------LN-------- | |
| 260 29== ---------------------------------PGFPRV----EPDSVIALNG------- | |
| 261 30== ---------------------------------PGFPRV----QPESVISLNG------- | |
| 262 31=p ---------------------------------PGFPRV----QPESVISLNG------- | |
| 263 32== --------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR-- | |
| 264 33=p --------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG-- | |
| 265 34== SVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--- | |
| 266 35=p SVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--- | |
| 267 36== -------------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGIA | |
| 268 | |
| 269 | |
| 270 1== ------------------------------------------------------------ | |
| 271 2== ------------------------------------------------------------ | |
| 272 3== ------------------------------------------------------------ | |
| 273 4=p ------------------------------------------------------------ | |
| 274 5=p ------------------------------------------------------------ | |
| 275 6== ------------------------------------------------------------ | |
| 276 7== ------------------------------------------------------------ | |
| 277 8=opsin, ------------------------------------------------------------ | |
| 278 9== ------------------------------------------------------------ | |
| 279 10== ------------------------------------------------------------ | |
| 280 11== ------------------------------------------------------------ | |
| 281 12== ------------------------------------------------------------ | |
| 282 13== ------------------------------------------------------------ | |
| 283 14== --VESL------------------------------------------------------ | |
| 284 15== --VDSL------------------------------------------------------ | |
| 285 16== --VESL------------------------------------------------------ | |
| 286 17== --VESL------------------------------------------------------ | |
| 287 18== --VSTL------------------------------------------------------ | |
| 288 19== --VTNL------------------------------------------------------ | |
| 289 20== --VKSL------------------------------------------------------ | |
| 290 21== --VKSL------------------------------------------------------ | |
| 291 22== --VKSL------------------------------------------------------ | |
| 292 23== --VKSL------------------------------------------------------ | |
| 293 24== --VKSL------------------------------------------------------ | |
| 294 25== --VASL------------------------------------------------------ | |
| 295 26== --VASL------------------------------------------------------ | |
| 296 27== --AKEL------------------------------------------------------ | |
| 297 28== --AKEL------------------------------------------------------ | |
| 298 29== --IVKL----------------------QK---------EVEECAN-------------- | |
| 299 30== --VVKL----------------------QK---------EVEECAN-------------- | |
| 300 31=p --VVKL----------------------QK---------EVEECAN-------------- | |
| 301 32== -------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG-- | |
| 302 33=p -------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG-- | |
| 303 34== -------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-- | |
| 304 35=p -------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-- | |
| 305 36== AAVVAVIGRPLPTISETTTTGFTNVSS----NNTSP---EKQSCANGLEADPPTTGYGAV | |
| 306 | |
| 307 | |
| 308 1== -------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-H | |
| 309 2== -------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-H | |
| 310 3== -------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-N | |
| 311 4=p -------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-N | |
| 312 5=p -------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-N | |
| 313 6== -------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-H | |
| 314 7== -------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-N | |
| 315 8=opsin, -------------ESESTQK------AEKEVTRMVVVMVLAFC----------------- | |
| 316 9== -------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-N | |
| 317 10== -------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-N | |
| 318 11== -------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-N | |
| 319 12== -------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-N | |
| 320 13== -------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-H | |
| 321 14== ----------RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-G | |
| 322 15== ----------RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-G | |
| 323 16== ----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G | |
| 324 17== ----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G | |
| 325 18== ----------RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-G | |
| 326 19== ----------RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-G | |
| 327 20== ----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K | |
| 328 21== ----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K | |
| 329 22== ----------RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-K | |
| 330 23== ----------RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-K | |
| 331 24== ----------RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-K | |
| 332 25== ----------RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-N | |
| 333 26== ----------RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-S | |
| 334 27== ----------R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-G | |
| 335 28== ----------R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-G | |
| 336 29== ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC | |
| 337 30== ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC | |
| 338 31=p ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC | |
| 339 32== PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C | |
| 340 33=p SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C | |
| 341 34== -----------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-V | |
| 342 35=p -----------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-V | |
| 343 36== AAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-C | |
| 344 * . : | |
| 345 | |
| 346 1== QGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC--------GKNPL | |
| 347 2== QGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC--------GKNPL | |
| 348 3== KGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC--------GKNPF | |
| 349 4=p KGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC--------GKNPL | |
| 350 5=p KGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC--------GKNPL | |
| 351 6== RGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC--------GKN-I | |
| 352 7== RNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC--------GKA-M | |
| 353 8=opsin, ------------------------------------------------------------ | |
| 354 9== PGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF---------GKK-V | |
| 355 10== PGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF---------GKK-V | |
| 356 11== PGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF---------GKK-V | |
| 357 12== PGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF---------GKK-V | |
| 358 13== KGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY----QPQR-T | |
| 359 14== DKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL---------N | |
| 360 15== DKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI---------S | |
| 361 16== DKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV---------N | |
| 362 17== DKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV---------N | |
| 363 18== DTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HE-T | |
| 364 19== NAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HE-K | |
| 365 20== F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V | |
| 366 21== F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V | |
| 367 22== F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V | |
| 368 23== I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GN-T | |
| 369 24== I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GT-T | |
| 370 25== L-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------A-A | |
| 371 26== SGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GS-G | |
| 372 27== PAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKE-C | |
| 373 28== PLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKE-T | |
| 374 29== GTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR----NINR-- | |
| 375 30== GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR----NINR-- | |
| 376 31=p GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR----NINR-- | |
| 377 32== ESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC----RQ---- | |
| 378 33=p ESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC----RR---- | |
| 379 34== DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR----RGHR-- | |
| 380 35=p DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR----RGHR-- | |
| 381 36== DCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV----RRRR-- | |
| 382 | |
| 383 | |
| 384 1== GDDE--SGASTSKTEVSSVS-TSPVSPA-------------------------------- | |
| 385 2== GDDE--ASATASKTE------TSQVAPA-------------------------------- | |
| 386 3== GDEDVSSTVSQSKTEVSSVS-SSQVSPA-------------------------------- | |
| 387 4=p GDDE-SSTVSTSKTEVSS------VSPA-------------------------------- | |
| 388 5=p GDEE-SSTVSTSKTEVSS------VSPA-------------------------------- | |
| 389 6== EEDE--ASTSSQVTQVSS------VAPEK------------------------------- | |
| 390 7== TDES--DTCSSQKTEVSTVS-STQVGPN-------------------------------- | |
| 391 8=opsin, ------------------------------------------------------------ | |
| 392 9== DDGS--ELSSASKTEVSSV---SSVSPA-------------------------------- | |
| 393 10== DDGS--ELSSASKTEVSSV---SSVSPA-------------------------------- | |
| 394 11== DDGS--EASTTSRTEVSSVS-NSSVAPA-------------------------------- | |
| 395 12== DDGS--EVST-SRTEVSSVS-NSSVSPA-------------------------------- | |
| 396 13== GKAS--PGTPGPHADVTAAGLRNKVMPAHPV----------------------------- | |
| 397 14== EKAP--ESSAVASTSTTQEP--QQTTAA-------------------------------- | |
| 398 15== EKAP--ESRAAISTSTTQEQ--QQTTAA-------------------------------- | |
| 399 16== EKSG--EISSAQST-TTQEQ--QQTTAA-------------------------------- | |
| 400 17== EKSG--EASSAQST-TTQEQ-TQQTSAA-------------------------------- | |
| 401 18== ETKS--NDDSQSNSTVAQDK-A-------------------------------------- | |
| 402 19== DPND--VEENQSSNTQTQEK-S-------------------------------------- | |
| 403 20== DDGK--SSDAQSQA-TASEA-ESKA----------------------------------- | |
| 404 21== DDGK--SSDAQSQA-TASEA-ESKA----------------------------------- | |
| 405 22== DDGK--SSEAQSQA-TTSEA-ESKA----------------------------------- | |
| 406 23== DEPK--PDAPASDTETTSEA-DSKA----------------------------------- | |
| 407 24== DEPK--PDAPPSDTETTSEA-ESKD----------------------------------- | |
| 408 25== EPSS--DAVSTTSGTTTVTD-NEKSNA--------------------------------- | |
| 409 26== ESGS--DVKSEASATTTMEE-KPKIPEA-------------------------------- | |
| 410 27== EDAN--DAEEEVVASER--G-GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PP | |
| 411 28== EDDK--DAETEIPAGESSDA-APSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPP | |
| 412 29== ------KLSAAGMHEALKLAERPERPEF------------VLQNADY------------- | |
| 413 30== ------KLSAAGMHEALKLAERPERSEF------------VLQNSDH------------- | |
| 414 31=p ------KLSAAGMHEALKLAERPERSEF------------VLQNSDH------------- | |
| 415 32== ------------------------------------------------------------ | |
| 416 33=p ------------------------------------------------------------ | |
| 417 34== ------------------------------------------------------------ | |
| 418 35=p ------------------------------------------------------------ | |
| 419 36== ------A---------------PQ------------------------------------ | |
| 420 | |
| 421 | |
| 422 1== --------------------------------------------------------- | |
| 423 2== --------------------------------------------------------- | |
| 424 3== --------------------------------------------------------- | |
| 425 4=p --------------------------------------------------------- | |
| 426 5=p --------------------------------------------------------- | |
| 427 6== --------------------------------------------------------- | |
| 428 7== --------------------------------------------------------- | |
| 429 8=opsin, --------------------------------------------------------- | |
| 430 9== --------------------------------------------------------- | |
| 431 10== --------------------------------------------------------- | |
| 432 11== --------------------------------------------------------- | |
| 433 12== --------------------------------------------------------- | |
| 434 13== --------------------------------------------------------- | |
| 435 14== --------------------------------------------------------- | |
| 436 15== --------------------------------------------------------- | |
| 437 16== --------------------------------------------------------- | |
| 438 17== --------------------------------------------------------- | |
| 439 18== --------------------------------------------------------- | |
| 440 19== --------------------------------------------------------- | |
| 441 20== --------------------------------------------------------- | |
| 442 21== --------------------------------------------------------- | |
| 443 22== --------------------------------------------------------- | |
| 444 23== --------------------------------------------------------- | |
| 445 24== --------------------------------------------------------- | |
| 446 25== --------------------------------------------------------- | |
| 447 26== --------------------------------------------------------- | |
| 448 27== QGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA | |
| 449 28== QGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA | |
| 450 29== --------------------------------------------CRKKGHDS----- | |
| 451 30== --------------------------------------------CGKKGHDT----- | |
| 452 31=p --------------------------------------------CGKKGHDT----- | |
| 453 32== --------------------------------------------------------- | |
| 454 33=p --------------------------------------------------------- | |
| 455 34== --------------------------------------------------------- | |
| 456 35=p --------------------------------------------------------- | |
| 457 36== --------------------------------------------------------- | |
| 458 |