Mercurial > repos > rnateam > mafft
diff test-data/mafft_nwns_result.aln @ 15:bf28a8cff401 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
| author | bgruening |
|---|---|
| date | Wed, 20 Mar 2024 07:34:52 +0000 |
| parents | 6f28e90db932 |
| children |
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--- a/test-data/mafft_nwns_result.aln Tue Oct 31 15:48:53 2023 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,458 +0,0 @@ -CLUSTAL format alignment by MAFFT NW-NS-2 (v7.455) - - -1== ----------------------------------------MNG----------------T -2== ----------------------------------------MNG----------------T -3== ----------------------------------------MNG----------------T -4=p ----------------------------------------MNG----------------T -5=p ----------------------------------------MNG----------------T -6== ----------------------------------------MKQ----------------V -7== ----------------------------------------MRK----------------M -8=opsin, ------------------------------------------------------------ -9== ----------------------------------------MAQQWSLQRLAGRHPQDSYE -10== ----------------------------------------MAQQWSLQRLAGRHPQDSYE -11== ----------------------------------------MTEAWNVAVFAARRSRDD-D -12== ----------------------------------------MAA-WEAAFAARRRHEE--E -13== ----------------------------------------MS-----------------S -14== ----------MESGNVSS------------SLFGNVST-ALRP----------------E -15== ----------MEYHNVSS------------VL-GNVSS-VLRP----------------D -16== ----------ME------------------PL-CNASEPPLRP----------------E -17== ----------MD------------------AL-CNASEPPLRP----------------E -18== --------------------------------MTNATGPQMAY----------------Y -19== --------------------------------MANVTGPQMAF----------------Y -20== ----------ME----SF------------AVAAAQLGPHFAP----------------L -21== ----------ME----SF------------AVAAAQLGPHFAP----------------L -22== ----------MD----SF------------AAVATQLGPQFAA----------------P -23== -----MERSHLP----ET------------PFDLAHSGPRFQA----------------Q -24== -----MERSLLP----EP------------PLAMALLGPRFEA----------------Q -25== --------------------------------MIAVSGPSYEA----------------F -26== ----------------------------------MANQLSYSS----------------L -27== ---------------------------------------MVES----------------T -28== ----------------------------------------MGR----------------D -29== ---------MMDVNSSGRPDLYGHLRSFL-LPEVGRGLPDLSPDGGA------------D -30== ------------------------------------------------------------ -31=p ------------------------------------------------------------ -32== ----------MDVLSP-------------------------------------------- -33=p ----------MDVFSF-------------------------------------------- -34== MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLV------------T -35=p MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLV------------T -36== -MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGWEPNWNV------------T - - -1== E--G--DNFYVP----FSNKTGLARSPYEYPQY-------YLAEPWK---------YSAL -2== E--G--PNFYVP----FSNITGVVRSPFEQPQY-------YLAEPWQ---------FSML -3== E--G--INFYVP----MSNKTGVVRSPFEYPQY-------YLAEPWK---------YRLV -4=p E--G--KNFYVP----MSNRTGLVRSPFEYPQY-------YLAEPWQ---------FKIL -5=p E--G--NNFYVP----LSNRTGLVRSPFEYPQY-------YLAEPWQ---------FKLL -6== PEFH--EDFYIPIPLDINNLS--AYSPFLVPQD-------HLGNQGI---------FMAM -7== S--E--EEFYL-----FKNIS--SVGPWDGPQY-------HIAPVWA---------FYLQ -8=opsin, ------------------------------------------------------------ -9== DSTQ--SSIFT-----YTNSNS-TRGPFEGPNY-------HIAPRWV---------YHLT -10== DSTQ--SSIFT-----YTNSNS-TRGPFEGPNY-------HIAPRWV---------YHLT -11== DTTR--GSVFT-----YTNTNN-TRGPFEGPNY-------HIAPRWV---------YNLV -12== DTTR--DSVFT-----YTNSNN-TRGPFEGPNY-------HIAPRWV---------YNLT -13== NSSQ--AP-----------PNG-TPGPFDGPQW------PYQAPQST---------YVGV -14== ARLS--A----------ETRLLGWNVPPEELR--------HIPEHWLTYPEPPESMNYLL -15== ARLS--A----------ESRLLGWNVPPDELR--------HIPEHWLIYPEPPESMNYLL -16== AR-S--SG---N----GDLQFLGWNVPPDQIQ--------YIPEHWLTQLEPPASMHYML -17== ARMS--SG---S----DELQFLGWNVPPDQIQ--------YIPEHWLTQLEPPASMHYML -18== GAAS--MD-FGY----PEGVSIVDFVRPEIKP--------YVHQHWYNYPPVNPMWHYLL -19== GSGA--AT-FGY----PEGMTVADFVPDRVKH--------MVLDHWYNYPPVNPMWHYLL -20== S-----------------NGSVVDKVTPDMAH--------LISPYWNQFPAMDPIWAKIL -21== S-----------------NGSVVDKVTPDMAH--------LISPYWNQFPAMDPIWAKIL -22== S-----------------NGSVVDKVTPDMAH--------LISPYWDQFPAMDPIWAKIL -23== SSG---------------NGSVLDNVLPDMAH--------LVNPYWSRFAPMDPMMSKIL -24== TGG---------------NRSVLDNVLPDMAP--------LVNPHWSRFAPMDPTMSKIL -25== SYGG--QARF-------NNQTVVDKVPPDMLH--------LIDANWYQYPPLNPMWHGIL -26== GWPY--QP----------NASVVDTMPKEMLY--------MIHEHWYAFPPMNPLWYSIL -27== TLVN--QT-WWY------NPTVD------------------IHPHWAKFDPIPDAVYYSV -28== LRDN--ET-WWY------NPSIV------------------VHPHWREFDQVPDAVYYSL -29== PVAGSWAPHLLS------EVTASPAPTWDAPPDNASGCGEQIN--------YGRVEKVVI -30== ------MPHLLS---GFLEVTASPAPTWDAPPDNVSGCGEQIN--------YGRVEKVVI -31=p ------MPHLLS---GFLEVTASPAPTWDAPPDNVSGCGEQIN--------YGRVEKVVI -32== ---------------GQGNNTTSPPAPFET-GGNTTGISDVT---------VSYQ--VIT -33=p ---------------GQGNNTTASQEPFGT-GGNVTSISDVT---------FSYQ--VIT -34== SDFN--DSYGLT---GQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLT -35=p SDFN--DSYGLT---GQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLT -36== VVPN--TTWW------------QASAPFDTPAALVRAAAK-------------------- - - -1== AAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYTSM -2== AAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYTSL -3== CCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYTAW -4=p ALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYTAI -5=p AVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYTAI -6== SVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYSFF -7== AAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVASC -8=opsin, ------------------------------------------DLAETVIA-STISIVNQV -9== SVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVNQV -10== SVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVNQV -11== SFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFNQI -12== SVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVINQI -13== AVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSNNI -14== GTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYNSF -15== GTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYNSF -16== GVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--NSF -17== GVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYNSF -18== GVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYNCF -19== GVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYNCF -20== TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY -21== TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY -22== TAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY -23== GLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFY -24== GLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFY -25== GFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVINCY -26== GVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSNCF -27== GIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTISAF -28== GIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCF -29== GSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL -30== GSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL -31=p GSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL -32== SLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQV -33=p SLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQV -34== SVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEI -35=p SVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEI -36== AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVYEV - . - -1== N-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FRFGNTHAIM -2== H-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FRFGENHAIM -3== N-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FRFSATHAMM -4=p N-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSSHAFA -5=p N-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSTHASA -6== N-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FTFKTPHAIA -7== N-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FRFSSKHALT -8=opsin, S-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIV -9== Y-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VRFDAKLAIV -10== S-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIV -11== F-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IKFDSKLAII -12== S-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IKFDGKLAVA -13== N-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQFQRRHAVS -14== H-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKAIA -15== H-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKAIA -16== H-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVI -17== H-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVI -18== SGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PKLTTGKAVV -19== SGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PKLTQGKATF -20== F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG -21== F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG -22== F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG -23== Y-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIM -24== Y-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIM -25== Y-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGALI -26== A-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-APLTHKKATL -27== M-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRAFL -28== L-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFI -29== IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK -30== IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK -31=p IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK -32== L-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA -33=p L-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA -34== S-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILL -35=p S-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILL -36== V-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRVGM - : : * : : :*: : : - -1== GVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNNESYVVYMF -2== GVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMF -3== GIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHNESYVLYMF -4=p GIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNNESYVIYMF -5=p GIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNNESYVLYMF -6== GCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNNESYVMFLF -7== VVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLF -8=opsin, GIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM -9== GIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM -10== GIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM -11== GIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGCQSFMLTLM -12== GILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVVLM -13== GCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--NSYILSLF -14== MIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIF -15== MIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIF -16== MNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIF -17== MNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIF -18== FALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNTFSYNIFIF -19== MCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNTITYNICIF -20== KM---------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIFYS -21== KIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYS -22== KIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYS -23== KILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNPRSYLITYS -24== KIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNPRSYLITYS -25== RIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLSASYLVCYG -26== LLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSSASYVVIYG -27== MIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPSTRSFILCMY -28== MIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTTRSNILCMF -29== MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST -30== MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST -31=p MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST -32== LISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIYST -33=p LISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIYST -34== MIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFST -35=p MIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFST -36== MIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV----------GYQIFAT - : - -1== VVHFLVPFVIIFFCYGRLLCTV----KEAAAAQQ-------------------------- -2== VVHFTIPMIVIFFCYGQLVFTV----KEAAAQQQ-------------------------- -3== VIHFIIPVVVIFFSYGRLICKV----REAAAQQQ-------------------------- -4=p VCHFILPVAVIFFTYGRLVCTV----KAAAAQQQ-------------------------- -5=p ICHFILPVTIIFFTYGRLVCTV----KAAAAQQQ-------------------------- -6== CFCFAVPFGTIVFCYGQLLITL----KLAAKAQA-------------------------- -7== IFCFIVPLSLICFSYTQLLRAL----KAVAAQQQ-------------------------- -8=opsin, VTCCITPLSIIVLCYLQVWLAI----RAVAKQQK-------------------------- -9== VTCCITPLSIIVLCYLQVWLAI----RAVAKQQK-------------------------- -10== VTCCIIPLAIIMLCYLQVWLAI----RAVAKQQK-------------------------- -11== ITCCFLPLFIIIVCYLQVWMAI----RAVAAQQK-------------------------- -12== VTCCFFPLAIIILCYLQVWLAI----RAVAAQQK-------------------------- -13== VTCFVLPLSLILFSYTNLLLTL----RAAAAQQK-------------------------- -14== FFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK------------------------- -15== FFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK------------------------- -16== FFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKK------------------------- -17== LFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKK------------------------- -18== VFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKK------------------------- -19== IFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKK------------------------- -20== IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK------------------------- -21== IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK------------------------- -22== IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK------------------------- -23== LFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKK------------------------- -24== LFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKK------------------------- -25== IWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKK------------------------- -26== LAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKK------------------------- -27== FCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKR------------------------- -28== ILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKR------------------------- -29== AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF---------------------- -30== AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF---------------------- -31=p AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF---------------------- -32== FGAFYIPLLLMLVLYGRIF-------RAARFRIRK------------------------- -33=p FGAFYIPLLLMLVLYGRIF-------RAARFRIRK------------------------- -34== VGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETTLVASPKTEY -35=p VGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETTLVASPKTEY -36== ASSFYVPVLIILILYWRIY-------QTARKRIR-------------------------- - * : * : - -1== ------------------------------------------------------------ -2== ------------------------------------------------------------ -3== ------------------------------------------------------------ -4=p ------------------------------------------------------------ -5=p ------------------------------------------------------------ -6== ------------------------------------------------------------ -7== ------------------------------------------------------------ -8=opsin, ------------------------------------------------------------ -9== ------------------------------------------------------------ -10== ------------------------------------------------------------ -11== ------------------------------------------------------------ -12== ------------------------------------------------------------ -13== ------------------------------------------------------------ -14== --------------------------------------------------MN-------- -15== --------------------------------------------------MN-------- -16== --------------------------------------------------MN-------- -17== --------------------------------------------------MN-------- -18== --------------------------------------------------MN-------- -19== --------------------------------------------------MN-------- -20== --------------------------------------------------MN-------- -21== --------------------------------------------------MN-------- -22== --------------------------------------------------MN-------- -23== --------------------------------------------------MN-------- -24== --------------------------------------------------MN-------- -25== --------------------------------------------------MN-------- -26== --------------------------------------------------MN-------- -27== --------------------------------------------------LN-------- -28== --------------------------------------------------LN-------- -29== ---------------------------------PGFPRV----EPDSVIALNG------- -30== ---------------------------------PGFPRV----QPESVISLNG------- -31=p ---------------------------------PGFPRV----QPESVISLNG------- -32== --------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR-- -33=p --------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG-- -34== SVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--- -35=p SVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--- -36== -------------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGIA - - -1== ------------------------------------------------------------ -2== ------------------------------------------------------------ -3== ------------------------------------------------------------ -4=p ------------------------------------------------------------ -5=p ------------------------------------------------------------ -6== ------------------------------------------------------------ -7== ------------------------------------------------------------ -8=opsin, ------------------------------------------------------------ -9== ------------------------------------------------------------ -10== ------------------------------------------------------------ -11== ------------------------------------------------------------ -12== ------------------------------------------------------------ -13== ------------------------------------------------------------ -14== --VESL------------------------------------------------------ -15== --VDSL------------------------------------------------------ -16== --VESL------------------------------------------------------ -17== --VESL------------------------------------------------------ -18== --VSTL------------------------------------------------------ -19== --VTNL------------------------------------------------------ -20== --VKSL------------------------------------------------------ -21== --VKSL------------------------------------------------------ -22== --VKSL------------------------------------------------------ -23== --VKSL------------------------------------------------------ -24== --VKSL------------------------------------------------------ -25== --VASL------------------------------------------------------ -26== --VASL------------------------------------------------------ -27== --AKEL------------------------------------------------------ -28== --AKEL------------------------------------------------------ -29== --IVKL----------------------QK---------EVEECAN-------------- -30== --VVKL----------------------QK---------EVEECAN-------------- -31=p --VVKL----------------------QK---------EVEECAN-------------- -32== -------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG-- -33=p -------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG-- -34== -------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-- -35=p -------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-- -36== AAVVAVIGRPLPTISETTTTGFTNVSS----NNTSP---EKQSCANGLEADPPTTGYGAV - - -1== -------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-H -2== -------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-H -3== -------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-N -4=p -------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-N -5=p -------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-N -6== -------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-H -7== -------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-N -8=opsin, -------------ESESTQK------AEKEVTRMVVVMVLAFC----------------- -9== -------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-N -10== -------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-N -11== -------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-N -12== -------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-N -13== -------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-H -14== ----------RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-G -15== ----------RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-G -16== ----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G -17== ----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G -18== ----------RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-G -19== ----------RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-G -20== ----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K -21== ----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K -22== ----------RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-K -23== ----------RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-K -24== ----------RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-K -25== ----------RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-N -26== ----------RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-S -27== ----------R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-G -28== ----------R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-G -29== ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC -30== ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC -31=p ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC -32== PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C -33=p SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C -34== -----------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-V -35=p -----------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-V -36== AAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-C - * . : - -1== QGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC--------GKNPL -2== QGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC--------GKNPL -3== KGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC--------GKNPF -4=p KGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC--------GKNPL -5=p KGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC--------GKNPL -6== RGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC--------GKN-I -7== RNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC--------GKA-M -8=opsin, ------------------------------------------------------------ -9== PGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF---------GKK-V -10== PGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF---------GKK-V -11== PGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF---------GKK-V -12== PGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF---------GKK-V -13== KGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY----QPQR-T -14== DKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL---------N -15== DKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI---------S -16== DKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV---------N -17== DKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV---------N -18== DTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HE-T -19== NAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HE-K -20== F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V -21== F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V -22== F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V -23== I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GN-T -24== I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GT-T -25== L-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------A-A -26== SGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GS-G -27== PAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKE-C -28== PLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKE-T -29== GTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR----NINR-- -30== GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR----NINR-- -31=p GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR----NINR-- -32== ESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC----RQ---- -33=p ESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC----RR---- -34== DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR----RGHR-- -35=p DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR----RGHR-- -36== DCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV----RRRR-- - - -1== GDDE--SGASTSKTEVSSVS-TSPVSPA-------------------------------- -2== GDDE--ASATASKTE------TSQVAPA-------------------------------- -3== GDEDVSSTVSQSKTEVSSVS-SSQVSPA-------------------------------- -4=p GDDE-SSTVSTSKTEVSS------VSPA-------------------------------- -5=p GDEE-SSTVSTSKTEVSS------VSPA-------------------------------- -6== EEDE--ASTSSQVTQVSS------VAPEK------------------------------- -7== TDES--DTCSSQKTEVSTVS-STQVGPN-------------------------------- -8=opsin, ------------------------------------------------------------ -9== DDGS--ELSSASKTEVSSV---SSVSPA-------------------------------- -10== DDGS--ELSSASKTEVSSV---SSVSPA-------------------------------- -11== DDGS--EASTTSRTEVSSVS-NSSVAPA-------------------------------- -12== DDGS--EVST-SRTEVSSVS-NSSVSPA-------------------------------- -13== GKAS--PGTPGPHADVTAAGLRNKVMPAHPV----------------------------- -14== EKAP--ESSAVASTSTTQEP--QQTTAA-------------------------------- -15== EKAP--ESRAAISTSTTQEQ--QQTTAA-------------------------------- -16== EKSG--EISSAQST-TTQEQ--QQTTAA-------------------------------- -17== EKSG--EASSAQST-TTQEQ-TQQTSAA-------------------------------- -18== ETKS--NDDSQSNSTVAQDK-A-------------------------------------- -19== DPND--VEENQSSNTQTQEK-S-------------------------------------- -20== DDGK--SSDAQSQA-TASEA-ESKA----------------------------------- -21== DDGK--SSDAQSQA-TASEA-ESKA----------------------------------- -22== DDGK--SSEAQSQA-TTSEA-ESKA----------------------------------- -23== DEPK--PDAPASDTETTSEA-DSKA----------------------------------- -24== DEPK--PDAPPSDTETTSEA-ESKD----------------------------------- -25== EPSS--DAVSTTSGTTTVTD-NEKSNA--------------------------------- -26== ESGS--DVKSEASATTTMEE-KPKIPEA-------------------------------- -27== EDAN--DAEEEVVASER--G-GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PP -28== EDDK--DAETEIPAGESSDA-APSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPP -29== ------KLSAAGMHEALKLAERPERPEF------------VLQNADY------------- -30== ------KLSAAGMHEALKLAERPERSEF------------VLQNSDH------------- -31=p ------KLSAAGMHEALKLAERPERSEF------------VLQNSDH------------- -32== ------------------------------------------------------------ -33=p ------------------------------------------------------------ -34== ------------------------------------------------------------ -35=p ------------------------------------------------------------ -36== ------A---------------PQ------------------------------------ - - -1== --------------------------------------------------------- -2== --------------------------------------------------------- -3== --------------------------------------------------------- -4=p --------------------------------------------------------- -5=p --------------------------------------------------------- -6== --------------------------------------------------------- -7== --------------------------------------------------------- -8=opsin, --------------------------------------------------------- -9== --------------------------------------------------------- -10== --------------------------------------------------------- -11== --------------------------------------------------------- -12== --------------------------------------------------------- -13== --------------------------------------------------------- -14== --------------------------------------------------------- -15== --------------------------------------------------------- -16== --------------------------------------------------------- -17== --------------------------------------------------------- -18== --------------------------------------------------------- -19== --------------------------------------------------------- -20== --------------------------------------------------------- -21== --------------------------------------------------------- -22== --------------------------------------------------------- -23== --------------------------------------------------------- -24== --------------------------------------------------------- -25== --------------------------------------------------------- -26== --------------------------------------------------------- -27== QGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA -28== QGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA -29== --------------------------------------------CRKKGHDS----- -30== --------------------------------------------CGKKGHDT----- -31=p --------------------------------------------CGKKGHDT----- -32== --------------------------------------------------------- -33=p --------------------------------------------------------- -34== --------------------------------------------------------- -35=p --------------------------------------------------------- -36== --------------------------------------------------------- -