Mercurial > repos > rnateam > mafft
diff test-data/mafft_fftns_result.aln @ 0:a4e086689fae draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 1fc2105007248c6b9460c0f3a98e6589477d0b13
| author | rnateam |
|---|---|
| date | Thu, 18 Jun 2015 08:59:56 -0400 |
| parents | |
| children | 15974dd17515 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mafft_fftns_result.aln Thu Jun 18 08:59:56 2015 -0400 @@ -0,0 +1,504 @@ +> 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91] +-------------------MNGTE------------------------GDNF-------- +YVP----F-SNKTGLARSPY----------------EYPQY-------YLAEPWK----- +----YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-F +TVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FR +FGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNN +ESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE------------------------ +---------------------------------------------------AAAAQQ--- +------------------------------------------------------------ +--------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT- +HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC---------GKN +PLGD-DE--SGASTSKTEVSSVS-TSPV-------------------------------- +--------------------------------------------SPA------------- +------ +> 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94] +-------------------MNGTE------------------------GPNF-------- +YVP----F-SNITGVVRSPF----------------EQPQY-------YLAEPWQ----- +----FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-F +TTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FR +FGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNN +ESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE------------------------ +---------------------------------------------------AAAQQQ--- +------------------------------------------------------------ +--------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT- +HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC---------GKN +PLGD-DE--ASATASKTE------TSQV-------------------------------- +--------------------------------------------APA------------- +------ +> 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9 +-------------------MNGTE------------------------GINF-------- +YVP----M-SNKTGVVRSPF----------------EYPQY-------YLAEPWK----- +----YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-F +TVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FR +FSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHN +ESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE------------------------ +---------------------------------------------------AAAQQQ--- +------------------------------------------------------------ +--------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT- +NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC---------GKN +PFGD-EDVSSTVSQSKTEVSSVS-SSQV-------------------------------- +--------------------------------------------SPA------------- +------ +> 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish +-------------------MNGTE------------------------GKNF-------- +YVP----M-SNRTGLVRSPF----------------EYPQY-------YLAEPWQ----- +----FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-F +TVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FK +FSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNN +ESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA------------------------ +---------------------------------------------------AAAQQQ--- +------------------------------------------------------------ +--------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF- +NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC---------GKN +PLGD-DE-SSTVSTSKTEVSS------V-------------------------------- +--------------------------------------------SPA------------- +------ +> 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish +-------------------MNGTE------------------------GNNF-------- +YVP----L-SNRTGLVRSPF----------------EYPQY-------YLAEPWQ----- +----FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-F +TVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FK +FSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNN +ESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA------------------------ +---------------------------------------------------AAAQQQ--- +------------------------------------------------------------ +--------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF- +NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC---------GKN +PLGD-EE-SSTVSTSKTEVSS------V-------------------------------- +--------------------------------------------SPA------------- +------ +> 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208- +-------------------MKQVPEF----------------------HEDF-------- +YIPIPLDI-NNLS--AYSPF----------------LVPQD-------HLGNQGI----- +----FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-S +PLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FT +FKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNN +ESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL------------------------ +---------------------------------------------------AAKAQA--- +------------------------------------------------------------ +--------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS- +HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC---------GKN +-IEE-DE--ASTSSQVTQVSS------V-------------------------------- +--------------------------------------------APEK------------ +------ +> 7== M13299 1 human BCP <>[Science232(4747),193-202'86] +-------------------MRKMS------------------------EEEF-------- +YL-----F-KNIS--SVGPW----------------DGPQY-------HIAPVWA----- +----FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-V +FPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FR +FSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRS +ESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA------------------------ +---------------------------------------------------VAAQQQ--- +------------------------------------------------------------ +--------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN- +NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC---------GKA +-MTD-ES--DTCSSQKTEVSTVS-STQV-------------------------------- +--------------------------------------------GPN------------- +------ +> 8=opsin, greensensitive human (fragment) S07060 +------------------------------------------------------------ +------------------------------------------------------------ +--------------------------------------------------DLAETVIA-S +TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VR +FDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV +QSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA------------------------ +---------------------------------------------------VAKQQK--- +------------------------------------------------------------ +--------------ESESTQK------AEKEVTRMVVVMVLAFC---------------- +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------ +> 9== K03494 1 human GCP <>[Science232(4747),193-202'86] +-------------------MAQQWSL----------QRLAGRHPQDSYEDST-------- +QSSI-FTY-TNSNS-TRGPF----------------EGPNY-------HIAPRWV----- +----YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S +TISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VR +FDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV +QSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA------------------------ +---------------------------------------------------VAKQQK--- +------------------------------------------------------------ +--------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA- +NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF----------GKK +-VDD-GS--ELSSASKTEVSSV---SSV-------------------------------- +--------------------------------------------SPA------------- +------ +> 10== Z68193 1 human Red Opsin <>[] +-------------------MAQQWSL----------QRLAGRHPQDSYEDST-------- +QSSI-FTY-TNSNS-TRGPF----------------EGPNY-------HIAPRWV----- +----YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S +TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VR +FDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV +QSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA------------------------ +---------------------------------------------------VAKQQK--- +------------------------------------------------------------ +--------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA- +NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF----------GKK +-VDD-GS--ELSSASKTEVSSV---SSV-------------------------------- +--------------------------------------------SPA------------- +------ +> 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92] +-------------------MTEAWNV----------AVFAARRSRDD-DDTT-------- +RGSV-FTY-TNTNN-TRGPF----------------EGPNY-------HIAPRWV----- +----YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-S +TISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IK +FDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGC +QSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA------------------------ +---------------------------------------------------VAAQQK--- +------------------------------------------------------------ +--------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA- +NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF----------GKK +-VDD-GS--EASTTSRTEVSSVS-NSSV-------------------------------- +--------------------------------------------APA------------- +------ +> 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90] +-------------------MA-AWEA----------AFAARRRHEE--EDTT-------- +RDSV-FTY-TNSNN-TRGPF----------------EGPNY-------HIAPRWV----- +----YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-S +TISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IK +FDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGV +QSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA------------------------ +---------------------------------------------------VAAQQK--- +------------------------------------------------------------ +--------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA- +NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF----------GKK +-VDD-GS--EVST-SRTEVSSVS-NSSV-------------------------------- +--------------------------------------------SPA------------- +------ +> 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95] +-------------------MS---------------------------SNSS-------- +QAP--------PNG-TPGPF----------------DGPQW------PYQAPQST----- +----YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-S +SVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQ +FQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN-- +NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA------------------------ +---------------------------------------------------AAAQQK--- +------------------------------------------------------------ +--------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT- +HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY-----QPQR +-TGK-AS--PGTPGPHADVTAAGLRNKV-------------------------------- +--------------------------------------------MPAHP---V------- +------ +> 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87] +----------MESGNVSSSLFGNVST----------ALRPEARL----SA---------- +-ETRLLGW--------NVPP----------------EELR--------HIPEHWLTYPEP +PESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--T +PIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--K +MTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDT +RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------ +---------------------------------------------------LRDQAKKM- +--------------------------------NVESL----------------------- +-----------RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF- +GDKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL--------N +EKAP-ES-SAVASTSTTQEP-QQ-TTAA-------------------------------- +------------------------------------------------------------ +------ +> 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92 +----------MEYHNVSSVL-GNVSS----------VLRPDARL----SA---------- +-ESRLLGW--------NVPP----------------DELR--------HIPEHWLIYPEP +PESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--T +PIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--K +MTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDT +RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------ +---------------------------------------------------LRDQAKKM- +--------------------------------NVDSL----------------------- +-----------RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF- +GDKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI--------S +EKAP-ES-RAAISTSTTQEQ-QQ-TTAA-------------------------------- +------------------------------------------------------------ +------ +> 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87] +----------ME------PLCNASEP----------PLRPEAR-----SSGN-------- +GDLQFLGW--------NVPP----------------DQIQ--------YIPEHWLTQLEP +PASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A +PIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--N +MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDT +RLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA------------------------ +---------------------------------------------------LREQAKKM- +--------------------------------NVESL----------------------- +-----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF- +GDKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV--------N +EKSG-EI-SSAQST-TTQEQ-QQ-TTAA-------------------------------- +------------------------------------------------------------ +------ +> 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92 +----------MD------ALCNASEP----------PLRPEARM----SSGS-------- +DELQFLGW--------NVPP----------------DQIQ--------YIPEHWLTQLEP +PASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A +PIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--N +MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDT +RLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA------------------------ +---------------------------------------------------LREQAKKM- +--------------------------------NVESL----------------------- +-----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF- +GDKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV--------N +EKSG-EA-SSAQST-TTQEQTQQ-TSAA-------------------------------- +------------------------------------------------------------ +------ +> 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1 +-------------------MTNATGP----------QMAYYGAA----SMD--------- +-----FGYPEGVSIVDFVRP----------------EIKP--------YVHQHWYNYPPV +NPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-V +PFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PK +LTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNT +FSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA------------------------ +---------------------------------------------------MRAQAKKM- +--------------------------------NVSTL----------------------- +-----------RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM- +GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HET +ETKS-ND-DSQSNSTVAQDKA--------------------------------------- +------------------------------------------------------------ +------ +> 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1 +-------------------MANVTGP----------QMAFYGSG----AAT--------- +-----FGYPEGMTVADFVPD----------------RVKH--------MVLDHWYNYPPV +NPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-F +PPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PK +LTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNT +ITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA------------------------ +---------------------------------------------------MRAQAKKM- +--------------------------------NVTNL----------------------- +-----------RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL- +GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HEK +DPND-VE-ENQSSNTQTQEKS--------------------------------------- +------------------------------------------------------------ +------ +> 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85] +----------ME---SFAVAAAQLGP----------HFAPLS------------------ +----------NGSVVDKVTP----------------DMAH--------LISPYWNQFPAM +DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T +PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP +MTIPLALGKM---------------------------YVPEGNLTSCGIDYLE--RDWNP +RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------ +---------------------------------------------------MREQAKKM- +--------------------------------NVKSL----------------------- +-----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF- +KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV +DDGK-SS-DAQSQATASEAESKA------------------------------------- +------------------------------------------------------------ +------ +> 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85] +----------ME---SFAVAAAQLGP----------HFAPLS------------------ +----------NGSVVDKVTP----------------DMAH--------LISPYWNQFPAM +DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T +PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP +MTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNP +RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------ +---------------------------------------------------MREQAKKM- +--------------------------------NVKSL----------------------- +-----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF- +KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV +DDGK-SS-DAQSQATASEAESKA------------------------------------- +------------------------------------------------------------ +------ +> 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204' +----------MD---SFAAVATQLGP----------QFAAPS------------------ +----------NGSVVDKVTP----------------DMAH--------LISPYWDQFPAM +DPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T +PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP +MTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNP +RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------ +---------------------------------------------------MREQAKKM- +--------------------------------NVKSL----------------------- +-----------RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF- +KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV +DDGK-SS-EAQSQATTSEAESKA------------------------------------- +------------------------------------------------------------ +------ +> 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86] +-----MERSHLP---ETPFDLAHSGP----------RFQAQSSG---------------- +----------NGSVLDNVLP----------------DMAH--------LVNPYWSRFAPM +DPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S +PVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TP +MTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNP +RSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA------------------------ +---------------------------------------------------MREQAKKM- +--------------------------------NVKSL----------------------- +-----------RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF- +KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GNT +DEPKPDA-PASDTETTSEADSKA------------------------------------- +------------------------------------------------------------ +------ +> 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92 +-----MERSLLP---EPPLAMALLGP----------RFEAQTGG---------------- +----------NRSVLDNVLP----------------DMAP--------LVNPHWSRFAPM +DPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S +PVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TP +MTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNP +RSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA------------------------ +---------------------------------------------------MRDQAKKM- +--------------------------------NVKSL----------------------- +-----------RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF- +KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GTT +DEPKPDA-PPSDTETTSEAESKD------------------------------------- +------------------------------------------------------------ +------ +> 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[] +-------------------MIAVSGP----------SYEAFSYG----GQA--------- +----RF---NNQTVVDKVPP----------------DMLH--------LIDANWYQYPPL +NPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-S +PPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KP +LSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLS +ASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN------------------------ +---------------------------------------------------MREQAKKM- +--------------------------------NVASL----------------------- +-----------RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF- +NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------AA +EPSS-DA-VSTTSGTTTVTDNEK-SNA--------------------------------- +------------------------------------------------------------ +------ +> 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93] +---------------------MANQL----------SYSSLGWP----YQP--------- +----------NASVVDTMPK----------------EMLY--------MIHEHWYAFPPM +NPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-M +PTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-AP +LTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSS +ASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ------------------------ +---------------------------------------------------LREQAKKM- +--------------------------------NVASL----------------------- +-----------RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF- +SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GSG +ESGS-DV-KSEASATTTMEEKPK-IPEA-------------------------------- +------------------------------------------------------------ +------ +> 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88] +------------------------------------MVESTTLV----NQT--------- +-----WWY--NPTVD----------------------------------IHPHWAKFDPI +PDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGF +PLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKK +MSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPST +RSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE------------------------ +---------------------------------------------------MAAMAKRL- +--------------------------------NAKEL----------------------- +-----------R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF- +GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKEC +EDAN-DA-EEEVVASER--GGES-RDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PP +QGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQG---VDNQAYQA +------ +> 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93] +-------------------------------------MGRDLRD----NET--------- +-----WWY--NPSIV----------------------------------VHPHWREFDQV +PDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGF +PLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKK +MSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTT +RSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE------------------------ +---------------------------------------------------MAAMAKRL- +--------------------------------NAKEL----------------------- +-----------R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF- +GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKET +EDDK-DA-ETEIPAGESSDAAPS-ADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPP +QGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQG---VDNQAYQA +------ +> 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra +---------MMD-------VNSSGRPDLYGHLRSF-LLPEVGRGLPDLSPDGGADPVAGS +WAPHLLS---EVTASPAPTW----------------DAPPDNASGCGEQIN--------Y +GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-M +PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR +QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------- +-GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------------------- +----------------------------------P--------GFPR----VEPDS---- +---VIAL-----------------NGIVKLQ--------KEVEECAN------------- +-----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI +CGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR--------- +-----NINRKLSAAGMHEALKLA------------------------------------- +-------------------------------------------ERPERPEFVLQNADYCR +KKGHDS +> 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93] +------------------------------------------------------------ +-MPHLLSGFLEVTASPAPTW----------------DAPPDNVSGCGEQIN--------Y +GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M +PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR +QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------- +-GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------------------- +----------------------------------P--------GFPR----VQPES---- +---VISL-----------------NGVVKLQ--------KEVEECAN------------- +-----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI +CGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR--------- +-----NINRKLSAAGMHEALKLA------------------------------------- +-------------------------------------------ERPERSEFVLQNSDHCG +KKGHDT +> 31=p A47425 serotonin receptor 5HT-7 - rat +------------------------------------------------------------ +-MPHLLSGFLEVTASPAPTW----------------DAPPDNVSGCGEQIN--------Y +GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M +PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR +QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------- +-GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------------------- +----------------------------------P--------GFPR----VQPES---- +---VISL-----------------NGVVKLQ--------KEVEECAN------------- +-----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI +CGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR--------- +-----NINRKLSAAGMHEALKLA------------------------------------- +-------------------------------------------ERPERSEFVLQNSDHCG +KKGHDT +> 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92] +----------MD-------VLSPG------------QGNNTTSPPAPFETGG-------- +----------NTTGISDVTV---------------------------------------- +--SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L +PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK +RTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH--------- +-GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------ +---------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR- +--------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG- +-PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF- +CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC--------- +-----RQ----------------------------------------------------- +------------------------------------------------------------ +------ +> 33=p A35181 serotonin receptor class 1A - rat +----------MD-------VFSFG------------QGNNTTASQEPFGTGG-------- +----------NVTSISDVTF---------------------------------------- +--SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L +PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK +RTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH--------- +-GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------ +---------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG- +--------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG- +-SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF- +CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC--------- +-----RR----------------------------------------------------- +------------------------------------------------------------ +------ +> 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93] +MANFTFGDLALD-------VARMG-----GLASTPSGLRSTGLTTPGLSPTG-------- +----------LVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY +SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M +PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRR +RSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK--------- +-GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTE +YSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS-- +--------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS- +------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF- +VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR--------- +-----RGHR--------------------------------------------------- +------------------------------------------------------------ +------ +> 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail +MANFTFGDLALD-------VARMG-----GLASTPSGLRSTGLTTPGLSPTG-------- +----------LVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY +SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M +PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRR +RSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK--------- +-GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTE +YSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS-- +--------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS- +------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF- +VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR--------- +-----RGHR--------------------------------------------------- +------------------------------------------------------------ +------ +> 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi +-MEGAEGQEELD-------WEAL-------YLRLP--LQNCSWNSTGWEPNW-------- +----------NVTVVPNTTW---------WQASAPFDTPAALVRAAAK------------ +--------AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-M +PLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHA +STAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV--------- +-GYQIFATASSFYVPVLIILILYWRIYQTARKRIR------------------------- +--------------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGI +AAAVVAVIGRPLPTISETTTTGFTNVSS----NNTS---PEKQSCANGLEADPPTTGYGA +VAAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT- +CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV--------- +-----RRRRA-------------------------------------------------- +---------------------------------------------PQ------------- +------