Mercurial > repos > rnateam > mafft
view test-data/mafft_nwns_result.aln @ 0:a4e086689fae draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 1fc2105007248c6b9460c0f3a98e6589477d0b13
| author | rnateam |
|---|---|
| date | Thu, 18 Jun 2015 08:59:56 -0400 |
| parents | |
| children | 15974dd17515 |
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CLUSTAL format alignment by MAFFT NW-NS-2 (v7.221) 1== -------------------MNGTE------------------------GDNF-------- 2== -------------------MNGTE------------------------GPNF-------- 3== -------------------MNGTE------------------------GINF-------- 4=p -------------------MNGTE------------------------GKNF-------- 5=p -------------------MNGTE------------------------GNNF-------- 6== -------------------MKQVPEF----------------------HEDF-------- 7== -------------------MRKMS------------------------EEEF-------- 8=opsin, ------------------------------------------------------------ 9== -------------------MAQQWSL----------QRLAGRHPQDSYEDST-------- 10== -------------------MAQQWSL----------QRLAGRHPQDSYEDST-------- 11== -------------------MTEAWNV----------AVFAARRSRDD-DDTT-------- 12== -------------------MA-AWEA----------AFAARRRHEE--EDTT-------- 13== -------------------MS---------------------------SNSS-------- 14== ----------MESGNVSSSLFGNVST----------ALRPEARL----SA---------- 15== ----------MEYHNVSSVL-GNVSS----------VLRPDARL----SA---------- 16== ----------ME------PLCNASEP----------PLRPEAR-----SSGN-------- 17== ----------MD------ALCNASEP----------PLRPEARM----SSGS-------- 18== -------------------MTNATGP----------QMAYYGAA----SMD--------- 19== -------------------MANVTGP----------QMAFYGSG----AAT--------- 20== ----------ME---SFAVAAAQLGP----------HFAPLS------------------ 21== ----------ME---SFAVAAAQLGP----------HFAPLS------------------ 22== ----------MD---SFAAVATQLGP----------QFAAPS------------------ 23== -----MERSHLP---ETPFDLAHSGP----------RFQAQSSG---------------- 24== -----MERSLLP---EPPLAMALLGP----------RFEAQTGG---------------- 25== -------------------MIAVSGP----------SYEAFSYG----GQA--------- 26== ---------------------MANQL----------SYSSLGWP----YQP--------- 27== ------------------------------------MVESTTLV----NQT--------- 28== -------------------------------------MGRDLRD----NET--------- 29== ---------MMD-------VNSSGRPDLYGHLRSF-LLPEVGRGLPDLSPDGGADPVAGS 30== ------------------------------------------------------------ 31=p ------------------------------------------------------------ 32== ----------MD-------VLSPG------------QGNNTTSPPAPFETGG-------- 33=p ----------MD-------VFSFG------------QGNNTTASQEPFGTGG-------- 34== MANFTFGDLALD-------VARMG-----GLASTPSGLRSTGLTTPGLSPTG-------- 35=p MANFTFGDLALD-------VARMG-----GLASTPSGLRSTGLTTPGLSPTG-------- 36== -MEGAEGQEELD-------WEAL-------YLRLP--LQNCSWNSTGWEPNW-------- 1== YVP----F-SNKTGLARSPY----------------EYPQY-------YLAEPWK----- 2== YVP----F-SNITGVVRSPF----------------EQPQY-------YLAEPWQ----- 3== YVP----M-SNKTGVVRSPF----------------EYPQY-------YLAEPWK----- 4=p YVP----M-SNRTGLVRSPF----------------EYPQY-------YLAEPWQ----- 5=p YVP----L-SNRTGLVRSPF----------------EYPQY-------YLAEPWQ----- 6== YIPIPLDI-NNLS--AYSPF----------------LVPQD-------HLGNQGI----- 7== YL-----F-KNIS--SVGPW----------------DGPQY-------HIAPVWA----- 8=opsin, ------------------------------------------------------------ 9== QSSI-FTY-TNSNS-TRGPF----------------EGPNY-------HIAPRWV----- 10== QSSI-FTY-TNSNS-TRGPF----------------EGPNY-------HIAPRWV----- 11== RGSV-FTY-TNTNN-TRGPF----------------EGPNY-------HIAPRWV----- 12== RDSV-FTY-TNSNN-TRGPF----------------EGPNY-------HIAPRWV----- 13== QAP--------PNG-TPGPF----------------DGPQW------PYQAPQST----- 14== -ETRLLGW--------NVPP----------------EELR--------HIPEHWLTYPEP 15== -ESRLLGW--------NVPP----------------DELR--------HIPEHWLIYPEP 16== GDLQFLGW--------NVPP----------------DQIQ--------YIPEHWLTQLEP 17== DELQFLGW--------NVPP----------------DQIQ--------YIPEHWLTQLEP 18== -----FGYPEGVSIVDFVRP----------------EIKP--------YVHQHWYNYPPV 19== -----FGYPEGMTVADFVPD----------------RVKH--------MVLDHWYNYPPV 20== ----------NGSVVDKVTP----------------DMAH--------LISPYWNQFPAM 21== ----------NGSVVDKVTP----------------DMAH--------LISPYWNQFPAM 22== ----------NGSVVDKVTP----------------DMAH--------LISPYWDQFPAM 23== ----------NGSVLDNVLP----------------DMAH--------LVNPYWSRFAPM 24== ----------NRSVLDNVLP----------------DMAP--------LVNPHWSRFAPM 25== ----RF---NNQTVVDKVPP----------------DMLH--------LIDANWYQYPPL 26== ----------NASVVDTMPK----------------EMLY--------MIHEHWYAFPPM 27== -----WWY--NPTVD----------------------------------IHPHWAKFDPI 28== -----WWY--NPSIV----------------------------------VHPHWREFDQV 29== WAPHLLS---EVTASPAPTW----------------DAPPDNASGCGEQIN--------Y 30== -MPHLLSGFLEVTASPAPTW----------------DAPPDNVSGCGEQIN--------Y 31=p -MPHLLSGFLEVTASPAPTW----------------DAPPDNVSGCGEQIN--------Y 32== ----------NTTGISDVTV---------------------------------------- 33=p ----------NVTSISDVTF---------------------------------------- 34== ----------LVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY 35=p ----------LVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY 36== ----------NVTVVPNTTW---------WQASAPFDTPAALVRAAAK------------ 1== ----YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-F 2== ----FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-F 3== ----YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-F 4=p ----FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-F 5=p ----FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-F 6== ----FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-S 7== ----FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-V 8=opsin, --------------------------------------------------DLAETVIA-S 9== ----YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S 10== ----YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S 11== ----YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-S 12== ----YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-S 13== ----YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-S 14== PESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--T 15== PESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--T 16== PASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A 17== PASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A 18== NPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-V 19== NPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-F 20== DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T 21== DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T 22== DPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T 23== DPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S 24== DPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S 25== NPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-S 26== NPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-M 27== PDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGF 28== PDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGF 29== GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-M 30== GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M 31=p GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M 32== --SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L 33=p --SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L 34== SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M 35=p SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M 36== --------AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-M . 1== TVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FR 2== TTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FR 3== TVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FR 4=p TVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FK 5=p TVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FK 6== PLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FT 7== FPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FR 8=opsin, TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VR 9== TISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VR 10== TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VR 11== TISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IK 12== TISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IK 13== SVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQ 14== PIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--K 15== PIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--K 16== PIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--N 17== PIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--N 18== PFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PK 19== PPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PK 20== PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP 21== PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP 22== PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP 23== PVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TP 24== PVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TP 25== PPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KP 26== PTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-AP 27== PLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKK 28== PLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKK 29== PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR 30== PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR 31=p PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR 32== PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK 33=p PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK 34== PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRR 35=p PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRR 36== PLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHA : : * : : :*: : : 1== FGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNN 2== FGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNN 3== FSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHN 4=p FSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNN 5=p FSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNN 6== FKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNN 7== FSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRS 8=opsin, FDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV 9== FDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV 10== FDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV 11== FDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGC 12== FDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGV 13== FQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN-- 14== MTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDT 15== MTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDT 16== MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDT 17== MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDT 18== LTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNT 19== LTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNT 20== MTIPLALGKM---------------------------YVPEGNLTSCGIDYLE--RDWNP 21== MTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNP 22== MTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNP 23== MTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNP 24== MTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNP 25== LSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLS 26== LTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSS 27== MSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPST 28== MSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTT 29== QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------- 30== QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------- 31=p QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------- 32== RTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH--------- 33=p RTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH--------- 34== RSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK--------- 35=p RSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK--------- 36== STAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV--------- : 1== ESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE------------------------ 2== ESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE------------------------ 3== ESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE------------------------ 4=p ESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA------------------------ 5=p ESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA------------------------ 6== ESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL------------------------ 7== ESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA------------------------ 8=opsin, QSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA------------------------ 9== QSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA------------------------ 10== QSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA------------------------ 11== QSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA------------------------ 12== QSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA------------------------ 13== NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA------------------------ 14== RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------ 15== RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------ 16== RLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA------------------------ 17== RLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA------------------------ 18== FSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA------------------------ 19== ITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA------------------------ 20== RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------ 21== RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------ 22== RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------ 23== RSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA------------------------ 24== RSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA------------------------ 25== ASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN------------------------ 26== ASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ------------------------ 27== RSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE------------------------ 28== RSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE------------------------ 29== -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------------------- 30== -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------------------- 31=p -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------------------- 32== -GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------ 33=p -GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------ 34== -GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTE 35=p -GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTE 36== -GYQIFATASSFYVPVLIILILYWRIYQTARKRIR------------------------- * : * : 1== ---------------------------------------------------AAAAQQ--- 2== ---------------------------------------------------AAAQQQ--- 3== ---------------------------------------------------AAAQQQ--- 4=p ---------------------------------------------------AAAQQQ--- 5=p ---------------------------------------------------AAAQQQ--- 6== ---------------------------------------------------AAKAQA--- 7== ---------------------------------------------------VAAQQQ--- 8=opsin, ---------------------------------------------------VAKQQK--- 9== ---------------------------------------------------VAKQQK--- 10== ---------------------------------------------------VAKQQK--- 11== ---------------------------------------------------VAAQQK--- 12== ---------------------------------------------------VAAQQK--- 13== ---------------------------------------------------AAAQQK--- 14== ---------------------------------------------------LRDQAKKM- 15== ---------------------------------------------------LRDQAKKM- 16== ---------------------------------------------------LREQAKKM- 17== ---------------------------------------------------LREQAKKM- 18== ---------------------------------------------------MRAQAKKM- 19== ---------------------------------------------------MRAQAKKM- 20== ---------------------------------------------------MREQAKKM- 21== ---------------------------------------------------MREQAKKM- 22== ---------------------------------------------------MREQAKKM- 23== ---------------------------------------------------MREQAKKM- 24== ---------------------------------------------------MRDQAKKM- 25== ---------------------------------------------------MREQAKKM- 26== ---------------------------------------------------LREQAKKM- 27== ---------------------------------------------------MAAMAKRL- 28== ---------------------------------------------------MAAMAKRL- 29== ----------------------------------P--------GFPR----VEPDS---- 30== ----------------------------------P--------GFPR----VQPES---- 31=p ----------------------------------P--------GFPR----VQPES---- 32== ---------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR- 33=p ---------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG- 34== YSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS-- 35=p YSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS-- 36== --------------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGI 1== ------------------------------------------------------------ 2== ------------------------------------------------------------ 3== ------------------------------------------------------------ 4=p ------------------------------------------------------------ 5=p ------------------------------------------------------------ 6== ------------------------------------------------------------ 7== ------------------------------------------------------------ 8=opsin, ------------------------------------------------------------ 9== ------------------------------------------------------------ 10== ------------------------------------------------------------ 11== ------------------------------------------------------------ 12== ------------------------------------------------------------ 13== ------------------------------------------------------------ 14== --------------------------------NVESL----------------------- 15== --------------------------------NVDSL----------------------- 16== --------------------------------NVESL----------------------- 17== --------------------------------NVESL----------------------- 18== --------------------------------NVSTL----------------------- 19== --------------------------------NVTNL----------------------- 20== --------------------------------NVKSL----------------------- 21== --------------------------------NVKSL----------------------- 22== --------------------------------NVKSL----------------------- 23== --------------------------------NVKSL----------------------- 24== --------------------------------NVKSL----------------------- 25== --------------------------------NVASL----------------------- 26== --------------------------------NVASL----------------------- 27== --------------------------------NAKEL----------------------- 28== --------------------------------NAKEL----------------------- 29== ---VIAL-----------------NGIVKLQ--------KEVEECAN------------- 30== ---VISL-----------------NGVVKLQ--------KEVEECAN------------- 31=p ---VISL-----------------NGVVKLQ--------KEVEECAN------------- 32== --------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG- 33=p --------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG- 34== --------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS- 35=p --------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS- 36== AAAVVAVIGRPLPTISETTTTGFTNVSS----NNTS---PEKQSCANGLEADPPTTGYGA 1== --------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT- 2== --------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT- 3== --------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT- 4=p --------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF- 5=p --------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF- 6== --------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS- 7== --------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN- 8=opsin, --------------ESESTQK------AEKEVTRMVVVMVLAFC---------------- 9== --------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA- 10== --------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA- 11== --------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA- 12== --------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA- 13== --------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT- 14== -----------RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF- 15== -----------RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF- 16== -----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF- 17== -----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF- 18== -----------RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM- 19== -----------RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL- 20== -----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF- 21== -----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF- 22== -----------RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF- 23== -----------RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF- 24== -----------RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF- 25== -----------RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF- 26== -----------RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF- 27== -----------R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF- 28== -----------R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF- 29== -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI 30== -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI 31=p -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI 32== -PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF- 33=p -SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF- 34== ------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF- 35=p ------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF- 36== VAAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT- * . : 1== HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC---------GKN 2== HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC---------GKN 3== NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC---------GKN 4=p NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC---------GKN 5=p NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC---------GKN 6== HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC---------GKN 7== NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC---------GKA 8=opsin, ------------------------------------------------------------ 9== NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF----------GKK 10== NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF----------GKK 11== NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF----------GKK 12== NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF----------GKK 13== HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY-----QPQR 14== GDKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL--------N 15== GDKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI--------S 16== GDKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV--------N 17== GDKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV--------N 18== GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HET 19== GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HEK 20== KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV 21== KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV 22== KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV 23== KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GNT 24== KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GTT 25== NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------AA 26== SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GSG 27== GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKEC 28== GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKET 29== CGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR--------- 30== CGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR--------- 31=p CGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR--------- 32== CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC--------- 33=p CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC--------- 34== VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR--------- 35=p VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR--------- 36== CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV--------- 1== PLGD-DE--SGASTSKTEVSSVS-TSPV-------------------------------- 2== PLGD-DE--ASATASKTE------TSQV-------------------------------- 3== PFGD-EDVSSTVSQSKTEVSSVS-SSQV-------------------------------- 4=p PLGD-DE-SSTVSTSKTEVSS------V-------------------------------- 5=p PLGD-EE-SSTVSTSKTEVSS------V-------------------------------- 6== -IEE-DE--ASTSSQVTQVSS------V-------------------------------- 7== -MTD-ES--DTCSSQKTEVSTVS-STQV-------------------------------- 8=opsin, ------------------------------------------------------------ 9== -VDD-GS--ELSSASKTEVSSV---SSV-------------------------------- 10== -VDD-GS--ELSSASKTEVSSV---SSV-------------------------------- 11== -VDD-GS--EASTTSRTEVSSVS-NSSV-------------------------------- 12== -VDD-GS--EVST-SRTEVSSVS-NSSV-------------------------------- 13== -TGK-AS--PGTPGPHADVTAAGLRNKV-------------------------------- 14== EKAP-ES-SAVASTSTTQEP-QQ-TTAA-------------------------------- 15== EKAP-ES-RAAISTSTTQEQ-QQ-TTAA-------------------------------- 16== EKSG-EI-SSAQST-TTQEQ-QQ-TTAA-------------------------------- 17== EKSG-EA-SSAQST-TTQEQTQQ-TSAA-------------------------------- 18== ETKS-ND-DSQSNSTVAQDKA--------------------------------------- 19== DPND-VE-ENQSSNTQTQEKS--------------------------------------- 20== DDGK-SS-DAQSQATASEAESKA------------------------------------- 21== DDGK-SS-DAQSQATASEAESKA------------------------------------- 22== DDGK-SS-EAQSQATTSEAESKA------------------------------------- 23== DEPKPDA-PASDTETTSEADSKA------------------------------------- 24== DEPKPDA-PPSDTETTSEAESKD------------------------------------- 25== EPSS-DA-VSTTSGTTTVTDNEK-SNA--------------------------------- 26== ESGS-DV-KSEASATTTMEEKPK-IPEA-------------------------------- 27== EDAN-DA-EEEVVASER--GGES-RDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PP 28== EDDK-DA-ETEIPAGESSDAAPS-ADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPP 29== -----NINRKLSAAGMHEALKLA------------------------------------- 30== -----NINRKLSAAGMHEALKLA------------------------------------- 31=p -----NINRKLSAAGMHEALKLA------------------------------------- 32== -----RQ----------------------------------------------------- 33=p -----RR----------------------------------------------------- 34== -----RGHR--------------------------------------------------- 35=p -----RGHR--------------------------------------------------- 36== -----RRRRA-------------------------------------------------- 1== --------------------------------------------SPA------------- 2== --------------------------------------------APA------------- 3== --------------------------------------------SPA------------- 4=p --------------------------------------------SPA------------- 5=p --------------------------------------------SPA------------- 6== --------------------------------------------APEK------------ 7== --------------------------------------------GPN------------- 8=opsin, ------------------------------------------------------------ 9== --------------------------------------------SPA------------- 10== --------------------------------------------SPA------------- 11== --------------------------------------------APA------------- 12== --------------------------------------------SPA------------- 13== --------------------------------------------MPAHP---V------- 14== ------------------------------------------------------------ 15== ------------------------------------------------------------ 16== ------------------------------------------------------------ 17== ------------------------------------------------------------ 18== ------------------------------------------------------------ 19== ------------------------------------------------------------ 20== ------------------------------------------------------------ 21== ------------------------------------------------------------ 22== ------------------------------------------------------------ 23== ------------------------------------------------------------ 24== ------------------------------------------------------------ 25== ------------------------------------------------------------ 26== ------------------------------------------------------------ 27== QGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQG---VDNQAYQA 28== QGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQG---VDNQAYQA 29== -------------------------------------------ERPERPEFVLQNADYCR 30== -------------------------------------------ERPERSEFVLQNSDHCG 31=p -------------------------------------------ERPERSEFVLQNSDHCG 32== ------------------------------------------------------------ 33=p ------------------------------------------------------------ 34== ------------------------------------------------------------ 35=p ------------------------------------------------------------ 36== ---------------------------------------------PQ------------- 1== ------ 2== ------ 3== ------ 4=p ------ 5=p ------ 6== ------ 7== ------ 8=opsin, ------ 9== ------ 10== ------ 11== ------ 12== ------ 13== ------ 14== ------ 15== ------ 16== ------ 17== ------ 18== ------ 19== ------ 20== ------ 21== ------ 22== ------ 23== ------ 24== ------ 25== ------ 26== ------ 27== ------ 28== ------ 29== KKGHDS 30== KKGHDT 31=p KKGHDT 32== ------ 33=p ------ 34== ------ 35=p ------ 36== ------