Mercurial > repos > rnateam > mafft
view test-data/mafft_fftns_result.aln @ 2:d71e007323d4 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit ef7eb622ae8ea3a2a5aa5f5d2c9eaf41367bfef9-dirty
| author | rnateam |
|---|---|
| date | Tue, 04 Aug 2015 04:01:23 -0400 |
| parents | a4e086689fae |
| children | 15974dd17515 |
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> 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91] -------------------MNGTE------------------------GDNF-------- YVP----F-SNKTGLARSPY----------------EYPQY-------YLAEPWK----- ----YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-F TVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FR FGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNN ESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE------------------------ ---------------------------------------------------AAAAQQ--- ------------------------------------------------------------ --------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT- HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC---------GKN PLGD-DE--SGASTSKTEVSSVS-TSPV-------------------------------- --------------------------------------------SPA------------- ------ > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94] -------------------MNGTE------------------------GPNF-------- YVP----F-SNITGVVRSPF----------------EQPQY-------YLAEPWQ----- ----FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-F TTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FR FGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNN ESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE------------------------ ---------------------------------------------------AAAQQQ--- ------------------------------------------------------------ --------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT- HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC---------GKN PLGD-DE--ASATASKTE------TSQV-------------------------------- --------------------------------------------APA------------- ------ > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9 -------------------MNGTE------------------------GINF-------- YVP----M-SNKTGVVRSPF----------------EYPQY-------YLAEPWK----- ----YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-F TVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FR FSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHN ESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE------------------------ ---------------------------------------------------AAAQQQ--- ------------------------------------------------------------ --------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT- NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC---------GKN PFGD-EDVSSTVSQSKTEVSSVS-SSQV-------------------------------- --------------------------------------------SPA------------- ------ > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish -------------------MNGTE------------------------GKNF-------- YVP----M-SNRTGLVRSPF----------------EYPQY-------YLAEPWQ----- ----FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-F TVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FK FSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNN ESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA------------------------ ---------------------------------------------------AAAQQQ--- ------------------------------------------------------------ --------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF- NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC---------GKN PLGD-DE-SSTVSTSKTEVSS------V-------------------------------- --------------------------------------------SPA------------- ------ > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish -------------------MNGTE------------------------GNNF-------- YVP----L-SNRTGLVRSPF----------------EYPQY-------YLAEPWQ----- ----FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-F TVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FK FSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNN ESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA------------------------ ---------------------------------------------------AAAQQQ--- ------------------------------------------------------------ --------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF- NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC---------GKN PLGD-EE-SSTVSTSKTEVSS------V-------------------------------- --------------------------------------------SPA------------- ------ > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208- -------------------MKQVPEF----------------------HEDF-------- YIPIPLDI-NNLS--AYSPF----------------LVPQD-------HLGNQGI----- ----FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-S PLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FT FKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNN ESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL------------------------ ---------------------------------------------------AAKAQA--- ------------------------------------------------------------ --------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS- HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC---------GKN -IEE-DE--ASTSSQVTQVSS------V-------------------------------- --------------------------------------------APEK------------ ------ > 7== M13299 1 human BCP <>[Science232(4747),193-202'86] -------------------MRKMS------------------------EEEF-------- YL-----F-KNIS--SVGPW----------------DGPQY-------HIAPVWA----- ----FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-V FPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FR FSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRS ESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA------------------------ ---------------------------------------------------VAAQQQ--- ------------------------------------------------------------ --------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN- NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC---------GKA -MTD-ES--DTCSSQKTEVSTVS-STQV-------------------------------- --------------------------------------------GPN------------- ------ > 8=opsin, greensensitive human (fragment) S07060 ------------------------------------------------------------ ------------------------------------------------------------ --------------------------------------------------DLAETVIA-S TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VR FDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV QSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA------------------------ ---------------------------------------------------VAKQQK--- ------------------------------------------------------------ --------------ESESTQK------AEKEVTRMVVVMVLAFC---------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------ > 9== K03494 1 human GCP <>[Science232(4747),193-202'86] -------------------MAQQWSL----------QRLAGRHPQDSYEDST-------- QSSI-FTY-TNSNS-TRGPF----------------EGPNY-------HIAPRWV----- ----YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S TISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VR FDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV QSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA------------------------ ---------------------------------------------------VAKQQK--- ------------------------------------------------------------ --------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA- NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF----------GKK -VDD-GS--ELSSASKTEVSSV---SSV-------------------------------- --------------------------------------------SPA------------- ------ > 10== Z68193 1 human Red Opsin <>[] -------------------MAQQWSL----------QRLAGRHPQDSYEDST-------- QSSI-FTY-TNSNS-TRGPF----------------EGPNY-------HIAPRWV----- ----YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VR FDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV QSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA------------------------ ---------------------------------------------------VAKQQK--- ------------------------------------------------------------ --------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA- NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF----------GKK -VDD-GS--ELSSASKTEVSSV---SSV-------------------------------- --------------------------------------------SPA------------- ------ > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92] -------------------MTEAWNV----------AVFAARRSRDD-DDTT-------- RGSV-FTY-TNTNN-TRGPF----------------EGPNY-------HIAPRWV----- ----YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-S TISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IK FDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGC QSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA------------------------ ---------------------------------------------------VAAQQK--- ------------------------------------------------------------ --------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA- NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF----------GKK -VDD-GS--EASTTSRTEVSSVS-NSSV-------------------------------- --------------------------------------------APA------------- ------ > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90] -------------------MA-AWEA----------AFAARRRHEE--EDTT-------- RDSV-FTY-TNSNN-TRGPF----------------EGPNY-------HIAPRWV----- ----YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-S TISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IK FDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGV QSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA------------------------ ---------------------------------------------------VAAQQK--- ------------------------------------------------------------ --------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA- NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF----------GKK -VDD-GS--EVST-SRTEVSSVS-NSSV-------------------------------- --------------------------------------------SPA------------- ------ > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95] -------------------MS---------------------------SNSS-------- QAP--------PNG-TPGPF----------------DGPQW------PYQAPQST----- ----YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-S SVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQ FQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN-- NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA------------------------ ---------------------------------------------------AAAQQK--- ------------------------------------------------------------ --------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT- HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY-----QPQR -TGK-AS--PGTPGPHADVTAAGLRNKV-------------------------------- --------------------------------------------MPAHP---V------- ------ > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87] ----------MESGNVSSSLFGNVST----------ALRPEARL----SA---------- -ETRLLGW--------NVPP----------------EELR--------HIPEHWLTYPEP PESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--T PIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--K MTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDT RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------ ---------------------------------------------------LRDQAKKM- --------------------------------NVESL----------------------- -----------RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF- GDKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL--------N EKAP-ES-SAVASTSTTQEP-QQ-TTAA-------------------------------- ------------------------------------------------------------ ------ > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92 ----------MEYHNVSSVL-GNVSS----------VLRPDARL----SA---------- -ESRLLGW--------NVPP----------------DELR--------HIPEHWLIYPEP PESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--T PIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--K MTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDT RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------ ---------------------------------------------------LRDQAKKM- --------------------------------NVDSL----------------------- -----------RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF- GDKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI--------S EKAP-ES-RAAISTSTTQEQ-QQ-TTAA-------------------------------- ------------------------------------------------------------ ------ > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87] ----------ME------PLCNASEP----------PLRPEAR-----SSGN-------- GDLQFLGW--------NVPP----------------DQIQ--------YIPEHWLTQLEP PASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A PIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--N MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDT RLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA------------------------ ---------------------------------------------------LREQAKKM- --------------------------------NVESL----------------------- -----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF- GDKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV--------N EKSG-EI-SSAQST-TTQEQ-QQ-TTAA-------------------------------- ------------------------------------------------------------ ------ > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92 ----------MD------ALCNASEP----------PLRPEARM----SSGS-------- DELQFLGW--------NVPP----------------DQIQ--------YIPEHWLTQLEP PASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A PIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--N MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDT RLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA------------------------ ---------------------------------------------------LREQAKKM- --------------------------------NVESL----------------------- -----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF- GDKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV--------N EKSG-EA-SSAQST-TTQEQTQQ-TSAA-------------------------------- ------------------------------------------------------------ ------ > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1 -------------------MTNATGP----------QMAYYGAA----SMD--------- -----FGYPEGVSIVDFVRP----------------EIKP--------YVHQHWYNYPPV NPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-V PFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PK LTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNT FSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA------------------------ ---------------------------------------------------MRAQAKKM- --------------------------------NVSTL----------------------- -----------RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM- GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HET ETKS-ND-DSQSNSTVAQDKA--------------------------------------- ------------------------------------------------------------ ------ > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1 -------------------MANVTGP----------QMAFYGSG----AAT--------- -----FGYPEGMTVADFVPD----------------RVKH--------MVLDHWYNYPPV NPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-F PPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PK LTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNT ITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA------------------------ ---------------------------------------------------MRAQAKKM- --------------------------------NVTNL----------------------- -----------RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL- GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HEK DPND-VE-ENQSSNTQTQEKS--------------------------------------- ------------------------------------------------------------ ------ > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85] ----------ME---SFAVAAAQLGP----------HFAPLS------------------ ----------NGSVVDKVTP----------------DMAH--------LISPYWNQFPAM DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP MTIPLALGKM---------------------------YVPEGNLTSCGIDYLE--RDWNP RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------ ---------------------------------------------------MREQAKKM- --------------------------------NVKSL----------------------- -----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF- KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV DDGK-SS-DAQSQATASEAESKA------------------------------------- ------------------------------------------------------------ ------ > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85] ----------ME---SFAVAAAQLGP----------HFAPLS------------------ ----------NGSVVDKVTP----------------DMAH--------LISPYWNQFPAM DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP MTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNP RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------ ---------------------------------------------------MREQAKKM- --------------------------------NVKSL----------------------- -----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF- KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV DDGK-SS-DAQSQATASEAESKA------------------------------------- ------------------------------------------------------------ ------ > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204' ----------MD---SFAAVATQLGP----------QFAAPS------------------ ----------NGSVVDKVTP----------------DMAH--------LISPYWDQFPAM DPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP MTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNP RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------ ---------------------------------------------------MREQAKKM- --------------------------------NVKSL----------------------- -----------RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF- KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV DDGK-SS-EAQSQATTSEAESKA------------------------------------- ------------------------------------------------------------ ------ > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86] -----MERSHLP---ETPFDLAHSGP----------RFQAQSSG---------------- ----------NGSVLDNVLP----------------DMAH--------LVNPYWSRFAPM DPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S PVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TP MTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNP RSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA------------------------ ---------------------------------------------------MREQAKKM- --------------------------------NVKSL----------------------- -----------RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF- KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GNT DEPKPDA-PASDTETTSEADSKA------------------------------------- ------------------------------------------------------------ ------ > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92 -----MERSLLP---EPPLAMALLGP----------RFEAQTGG---------------- ----------NRSVLDNVLP----------------DMAP--------LVNPHWSRFAPM DPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S PVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TP MTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNP RSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA------------------------ ---------------------------------------------------MRDQAKKM- --------------------------------NVKSL----------------------- -----------RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF- KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GTT DEPKPDA-PPSDTETTSEAESKD------------------------------------- ------------------------------------------------------------ ------ > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[] -------------------MIAVSGP----------SYEAFSYG----GQA--------- ----RF---NNQTVVDKVPP----------------DMLH--------LIDANWYQYPPL NPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-S PPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KP LSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLS ASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN------------------------ ---------------------------------------------------MREQAKKM- --------------------------------NVASL----------------------- -----------RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF- NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------AA EPSS-DA-VSTTSGTTTVTDNEK-SNA--------------------------------- ------------------------------------------------------------ ------ > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93] ---------------------MANQL----------SYSSLGWP----YQP--------- ----------NASVVDTMPK----------------EMLY--------MIHEHWYAFPPM NPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-M PTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-AP LTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSS ASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ------------------------ ---------------------------------------------------LREQAKKM- --------------------------------NVASL----------------------- -----------RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF- SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GSG ESGS-DV-KSEASATTTMEEKPK-IPEA-------------------------------- ------------------------------------------------------------ ------ > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88] ------------------------------------MVESTTLV----NQT--------- -----WWY--NPTVD----------------------------------IHPHWAKFDPI PDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGF PLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKK MSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPST RSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE------------------------ ---------------------------------------------------MAAMAKRL- --------------------------------NAKEL----------------------- -----------R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF- GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKEC EDAN-DA-EEEVVASER--GGES-RDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PP QGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQG---VDNQAYQA ------ > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93] -------------------------------------MGRDLRD----NET--------- -----WWY--NPSIV----------------------------------VHPHWREFDQV PDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGF PLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKK MSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTT RSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE------------------------ ---------------------------------------------------MAAMAKRL- --------------------------------NAKEL----------------------- -----------R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF- GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKET EDDK-DA-ETEIPAGESSDAAPS-ADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPP QGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQG---VDNQAYQA ------ > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra ---------MMD-------VNSSGRPDLYGHLRSF-LLPEVGRGLPDLSPDGGADPVAGS WAPHLLS---EVTASPAPTW----------------DAPPDNASGCGEQIN--------Y GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-M PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------- -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------------------- ----------------------------------P--------GFPR----VEPDS---- ---VIAL-----------------NGIVKLQ--------KEVEECAN------------- -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI CGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR--------- -----NINRKLSAAGMHEALKLA------------------------------------- -------------------------------------------ERPERPEFVLQNADYCR KKGHDS > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93] ------------------------------------------------------------ -MPHLLSGFLEVTASPAPTW----------------DAPPDNVSGCGEQIN--------Y GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------- -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------------------- ----------------------------------P--------GFPR----VQPES---- ---VISL-----------------NGVVKLQ--------KEVEECAN------------- -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI CGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR--------- -----NINRKLSAAGMHEALKLA------------------------------------- -------------------------------------------ERPERSEFVLQNSDHCG KKGHDT > 31=p A47425 serotonin receptor 5HT-7 - rat ------------------------------------------------------------ -MPHLLSGFLEVTASPAPTW----------------DAPPDNVSGCGEQIN--------Y GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------- -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------------------- ----------------------------------P--------GFPR----VQPES---- ---VISL-----------------NGVVKLQ--------KEVEECAN------------- -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI CGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR--------- -----NINRKLSAAGMHEALKLA------------------------------------- -------------------------------------------ERPERSEFVLQNSDHCG KKGHDT > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92] ----------MD-------VLSPG------------QGNNTTSPPAPFETGG-------- ----------NTTGISDVTV---------------------------------------- --SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK RTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH--------- -GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------ ---------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR- --------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG- -PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF- CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC--------- -----RQ----------------------------------------------------- ------------------------------------------------------------ ------ > 33=p A35181 serotonin receptor class 1A - rat ----------MD-------VFSFG------------QGNNTTASQEPFGTGG-------- ----------NVTSISDVTF---------------------------------------- --SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK RTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH--------- -GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------ ---------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG- --------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG- -SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF- CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC--------- -----RR----------------------------------------------------- ------------------------------------------------------------ ------ > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93] MANFTFGDLALD-------VARMG-----GLASTPSGLRSTGLTTPGLSPTG-------- ----------LVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRR RSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK--------- -GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTE YSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS-- --------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS- ------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF- VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR--------- -----RGHR--------------------------------------------------- ------------------------------------------------------------ ------ > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail MANFTFGDLALD-------VARMG-----GLASTPSGLRSTGLTTPGLSPTG-------- ----------LVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRR RSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK--------- -GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTE YSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS-- --------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS- ------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF- VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR--------- -----RGHR--------------------------------------------------- ------------------------------------------------------------ ------ > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi -MEGAEGQEELD-------WEAL-------YLRLP--LQNCSWNSTGWEPNW-------- ----------NVTVVPNTTW---------WQASAPFDTPAALVRAAAK------------ --------AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-M PLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHA STAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV--------- -GYQIFATASSFYVPVLIILILYWRIYQTARKRIR------------------------- --------------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGI AAAVVAVIGRPLPTISETTTTGFTNVSS----NNTS---PEKQSCANGLEADPPTTGYGA VAAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT- CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV--------- -----RRRRA-------------------------------------------------- ---------------------------------------------PQ------------- ------