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changeset 6:c5908940967d draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 1527e05bcd748a2b3cef22e0e356697066a55635
author rnateam
date Sat, 11 Nov 2017 15:06:34 -0500
parents 15974dd17515
children aaefa93c2dd2
files tool_dependencies.xml
diffstat 1 files changed, 0 insertions(+), 22 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Sep 20 09:30:47 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,22 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="mafft" version="7.221">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">https://raw.githubusercontent.com/bgruening/download_store/master/MAFFT/mafft-7.221-with-extensions-src.tgz</action>
-                <action type="change_directory">./core</action>
-                <action type="shell_command">sed -i "s|\(PREFIX = \).*$|\1$INSTALL_DIR|" Makefile</action>
-                <action type="shell_command">make clean; make; make install</action>
-                <action type="change_directory">../extensions</action>
-                <action type="shell_command">sed -i "s|\(PREFIX = \).*$|\1$INSTALL_DIR|" Makefile</action>
-                <action type="shell_command">make clean; make; make install</action>
-                <action type="set_environment">
-                    <environment_variable name="MAFFT_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-        </readme>
-    </package>
-</tool_dependency>