Mercurial > repos > rnateam > package_segemehl_0_1_6
comparison tool_dependencies.xml @ 0:7078b80ffc12 draft default tip
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| author | rnateam |
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| date | Tue, 05 Nov 2013 09:00:17 -0500 |
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| -1:000000000000 | 0:7078b80ffc12 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="segemehl" version="0.1.6"> | |
| 4 <install version="1.0"> | |
| 5 <actions> | |
| 6 <action type="download_by_url" target_filename="segemehl_0_1_6_1.tar.gz">http://www.bioinf.uni-leipzig.de/Software/segemehl/segemehl_0_1_6.tar.gz</action> | |
| 7 <action type="change_directory">segemehl</action> | |
| 8 <action type="shell_command">make</action> | |
| 9 <action type="move_file"> | |
| 10 <source>segemehl.x</source> | |
| 11 <destination>$INSTALL_DIR</destination> | |
| 12 </action> | |
| 13 <action type="set_environment"> | |
| 14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | |
| 15 </action> | |
| 16 </actions> | |
| 17 </install> | |
| 18 <readme> | |
| 19 Short read mapping with gaps. | |
| 20 To compile segemehl a C-compiler is needed, usually GCC. | |
| 21 http://www.bioinf.uni-leipzig.de/Software/segemehl/ | |
| 22 | |
| 23 Please note that segemehl loads the whole index and genome files into memory. | |
| 24 Segemehl's index is around 45GB in size, so the memory usage of that tool is huge. | |
| 25 </readme> | |
| 26 </package> | |
| 27 </tool_dependency> |