Mercurial > repos > rnateam > rcas
comparison readme.rst @ 0:aa9579837a2e draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
| author | rnateam |
|---|---|
| date | Thu, 13 Apr 2017 12:36:05 -0400 |
| parents | |
| children | 7c7a2a381dfe |
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| -1:000000000000 | 0:aa9579837a2e |
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| 1 Important notes | |
| 2 ---------------- | |
| 3 | |
| 4 - the dependencies of the tool are handled by the conda dependency resolver | |
| 5 | |
| 6 - to install the dependencies, the galaxy administrator needs to configure to ensure the conda channels - bioconda, r, conda-forge, defaults | |
| 7 | |
| 8 - by default, the conda installation includes hg19 | |
| 9 | |
| 10 - to enable analysis for mm9, ce10, dm3, the administrator needs to separately install the relevant packages from the channel bioconda | |
| 11 - bioconductor-bsgenome.dmelanogaster.ucsc.dm3 | |
| 12 - bioconductor-bsgenome.celegans.ucsc.ce10 | |
| 13 - bioconductor-bsgenome.mmusculus.ucsc.mm9 | |
| 14 - bioconductor-org.mm.eg.db | |
| 15 - bioconductor-org.ce.eg.db | |
| 16 - bioconductor-org.dm.eg.db |