Mercurial > repos > rnateam > rcas

diff readme.rst @ 0:aa9579837a2e draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rcas/ commit 3b9aec9beb72407e01f4a0c5b31c17ac3f92a851
author rnateam
date Thu, 13 Apr 2017 12:36:05 -0400
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+Important notes
+----------------
+
+- the dependencies of the tool are handled by the conda dependency resolver
+
+- to install the dependencies, the galaxy administrator needs to configure to ensure the conda channels - bioconda, r, conda-forge, defaults
+
+- by default, the conda installation includes hg19
+
+- to enable analysis for mm9, ce10, dm3, the administrator needs to separately install the relevant packages from the channel bioconda
+    - bioconductor-bsgenome.dmelanogaster.ucsc.dm3
+    - bioconductor-bsgenome.celegans.ucsc.ce10
+    - bioconductor-bsgenome.mmusculus.ucsc.mm9
+    - bioconductor-org.mm.eg.db
+    - bioconductor-org.ce.eg.db
+    - bioconductor-org.dm.eg.db