Mercurial > repos > rnateam > rnacommender
changeset 5:b3462a72ff76 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/rna_commander/tools/rna_tools/rna_commender commit 7ef62aa3d86abd4b911e35447646712a4628e7fe
| author | rnateam |
|---|---|
| date | Fri, 29 Jul 2016 03:27:18 -0400 |
| parents | a609d6dc8047 |
| children | |
| files | main.py rnacommender.xml |
| diffstat | 2 files changed, 10 insertions(+), 2 deletions(-) [+] |
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--- a/main.py Thu Jul 28 05:55:25 2016 -0400 +++ b/main.py Fri Jul 29 03:27:18 2016 -0400 @@ -44,5 +44,7 @@ P.predict() else: sys.stdout.write(""" - The queried protein has no domain similarity with the proteins in the training dataset. It cannot be predicted. + ######################################## + WARNING: The queried protein has no domain similarity with the proteins in the training dataset. It cannot be predicted. + ######################################## """)
--- a/rnacommender.xml Thu Jul 28 05:55:25 2016 -0400 +++ b/rnacommender.xml Fri Jul 29 03:27:18 2016 -0400 @@ -9,7 +9,13 @@ <requirement type="package" version="0.8.2">theano</requirement> <requirement type="package" version="2.10.0">requests</requirement> </requirements> - <command detect_errors="aggressive"> + <stdio> + <exit_code range="1:" /> + <exit_code range=":-1" /> + <regex match="Error:" /> + <regex match="Exception:" /> + </stdio> + <command> <![CDATA[ sh $__tool_directory__/init.sh 2> hide.txt && THEANO_FLAGS=base_compiledir=./tmp python $__tool_directory__/main.py "$infile"