Mercurial > repos > rnateam > splitfasta

annotate splitfasta.xml @ 0:bc25ba9d9fcf draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
author rnateam
date Sun, 05 Jul 2015 08:37:52 -0400
parents
children 279e2625de3a
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
1 <tool id="rbc_splitfasta" name="SplitFasta" version="0.1.0">
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
2 <requirements>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
3 </requirements>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
4 <stdio>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
5 <exit_code range="1:" />
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
6 </stdio>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
7
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
8 <command interpreter="python">
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
9 <![CDATA[
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
10 splitFasta.py $inputFile; echo 'blah' > blah
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
11 ]]></command>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
12 <inputs>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
13 <param name="inputFile" type="data" format="txt" label="Fasta file to split"/>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
14 </inputs>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
15 <outputs>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
16 <collection type="list">
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
17 <discover_datasets pattern="(?P&lt;designation&gt;.*)" directory="splits" visible="false"/>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
18 </collection>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
19 </outputs>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
20 <help><![CDATA[
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
21 Takes an input file and writes each consecutive two lines to a separate file, in a dataset collection.
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
22 ]]></help>
bc25ba9d9fcf planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
rnateam
parents:
diff changeset
23 </tool>