Mercurial > repos > rnateam > splitfasta

diff splitfasta.xml @ 0:bc25ba9d9fcf draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit fcd6ef7e59971abd6b6a3a5401f92bcdef6ef76c
author rnateam
date Sun, 05 Jul 2015 08:37:52 -0400
parents
children 279e2625de3a
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/splitfasta.xml	Sun Jul 05 08:37:52 2015 -0400
@@ -0,0 +1,23 @@
+<tool id="rbc_splitfasta" name="SplitFasta" version="0.1.0">
+    <requirements>
+    </requirements>
+    <stdio>
+        <exit_code range="1:" />
+    </stdio>
+
+    <command interpreter="python">
+    <![CDATA[
+        splitFasta.py $inputFile; echo 'blah' > blah
+    ]]></command>
+    <inputs>
+        <param name="inputFile" type="data" format="txt" label="Fasta file to split"/>
+    </inputs>
+    <outputs>
+        <collection type="list">
+            <discover_datasets pattern="(?P&lt;designation&gt;.*)" directory="splits" visible="false"/>
+        </collection>
+    </outputs>
+    <help><![CDATA[
+        Takes an input file and writes each consecutive two lines to a separate file, in a dataset collection.
+    ]]></help>
+</tool>