Mercurial > repos > rnateam > viennarna_rnacofold

changeset 1:cb8201484ad8 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 14f0b39f64982773ef0367379b915f742eabcc1b
author rnateam
date Wed, 21 Dec 2016 17:32:46 -0500
parents f3d4656ed57c
children f3384a8b45a2
files macros.xml rnacofold.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Tue Dec 06 12:33:31 2016 -0500
+++ b/macros.xml	Wed Dec 21 17:32:46 2016 -0500
@@ -1,7 +1,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement version="2.2.10">viennarna</requirement>
+            <requirement type="package" version="2.2.10">viennarna</requirement>
         </requirements>
     </xml>
     <token name="@VERSION@">2.2.10</token>
--- a/rnacofold.xml	Tue Dec 06 12:33:31 2016 -0500
+++ b/rnacofold.xml	Wed Dec 21 17:32:46 2016 -0500
@@ -131,8 +131,8 @@
             <repeat name="concfiles" title="A file with initial concentrations for the two sequences" default="0" max="1" help="The table consits of arbitrary many lines with just two numbers (the concentration of sequence A and B). This option will automatically toggle the −c (and thus -a and --all_pf) options">
                 <param type="data" name="concfile" format="*" label="Concentrations file"/>
             </repeat>			
-            <param argument="--pfScale" type="float" value="1.07" label="Scaling factor" help="In the calculation of the pf use scale*mfe as an estimate for the ensemble free energy (used to avoid overflows). The default is 1.07, useful values are 1.0 to 1.2. Occasionally needed for long sequences." argumen="--pfScale"/>
-            <param argument="--bppmThreshold" type="float" value="1e-5" label="Threshold for base pair probabilities" help="By setting the threshold the base pair probabilities that are included in the output can be varied. By default only those exceeding 1e−5 in probability will be shown as squares in the dot plot. Changing the threshold to any other value allows for increase or decrease of data." argumen="--bppmThreshold"/>
+            <param argument="--pfScale" type="float" value="1.07" label="Scaling factor" help="In the calculation of the pf use scale*mfe as an estimate for the ensemble free energy (used to avoid overflows). The default is 1.07, useful values are 1.0 to 1.2. Occasionally needed for long sequences."/>
+            <param argument="--bppmThreshold" type="float" value="1e-5" label="Threshold for base pair probabilities" help="By setting the threshold the base pair probabilities that are included in the output can be varied. By default only those exceeding 1e−5 in probability will be shown as squares in the dot plot. Changing the threshold to any other value allows for increase or decrease of data."/>
             <param argument="--gquad" type="boolean" truevalue="--gquad" falsevalue="" checked="false" label="G Quadruplex formation" help="take into account G Quadruplex formation"/>
         </section>      
     </inputs>