Mercurial > repos > rnateam > viennarna_rnaheat

annotate test-data/Anolis_caro_chrUn_GL343207.trna3_AlaAGC_dp.ps @ 6:c7fe6d50a6ad draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
author rnateam
date Wed, 20 Dec 2017 08:30:24 -0500
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c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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1 %!PS-Adobe-3.0 EPSF-3.0
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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2 %%Title: RNA Dot Plot
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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3 %%Creator: ViennaRNA-2.2.10
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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4 %%CreationDate: Tue Dec 19 19:42:58 2017
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5 %%BoundingBox: 66 211 518 662
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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6 %%DocumentFonts: Helvetica
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7 %%Pages: 1
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8 %%EndComments
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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9
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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10 %Options:
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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11 %
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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12 %This file contains the square roots of the base pair probabilities in the form
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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13 % i j sqrt(p(i,j)) ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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15 %%BeginProlog
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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16 /DPdict 100 dict def
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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17 DPdict begin
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18 /logscale false def
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19 /lpmin 1e-05 log def
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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20
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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21 /box { %size x y box - draws box centered on x,y
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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22 2 index 0.5 mul sub % x -= 0.5
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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23 exch 2 index 0.5 mul sub exch % y -= 0.5
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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24 3 -1 roll dup rectfill
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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25 } bind def
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27 /ubox {
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28 logscale {
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29 log dup add lpmin div 1 exch sub dup 0 lt { pop 0 } if
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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30 } if
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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31 3 1 roll
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32 exch len exch sub 1 add box
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33 } bind def
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34
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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35 /lbox {
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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36 3 1 roll
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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37 len exch sub 1 add box
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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38 } bind def
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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39
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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40 /drawseq {
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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41 % print sequence along all 4 sides
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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42 [ [0.7 -0.3 0 ]
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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43 [0.7 0.7 len add 0]
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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44 [-0.3 len sub -0.4 -90]
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45 [-0.3 len sub 0.7 len add -90]
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46 ] {
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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47 gsave
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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48 aload pop rotate translate
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49 0 1 len 1 sub {
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50 dup 0 moveto
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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51 sequence exch 1 getinterval
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52 show
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53 } for
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54 grestore
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55 } forall
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56 } bind def
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58 /drawgrid{
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59 0.01 setlinewidth
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60 len log 0.9 sub cvi 10 exch exp % grid spacing
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61 dup 1 gt {
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62 dup dup 20 div dup 2 array astore exch 40 div setdash
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63 } { [0.3 0.7] 0.1 setdash } ifelse
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64 0 exch len {
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65 dup dup
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66 0 moveto
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67 len lineto
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68 dup
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69 len exch sub 0 exch moveto
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71 stroke
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72 } for
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73 [] 0 setdash
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74 0.04 setlinewidth
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75 currentdict /cutpoint known {
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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76 cutpoint 1 sub
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77 dup dup -1 moveto len 1 add lineto
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79 -1 exch moveto len 1 add exch lineto
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80 stroke
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81 } if
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82 0.5 neg dup translate
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83 } bind def
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84
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85 end
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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86 %%EndProlog
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
87 DPdict begin
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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88 %delete next line to get rid of title
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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89 270 665 moveto /Helvetica findfont 14 scalefont setfont (Anolis_caro_chrUn_GL343207.trna3_AlaAGC) show
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
90
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
91 /sequence { (\
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
92 GGGGAAUUAGCUCAAAUGGUAGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUUGAUGCCCGCAUUCUCCA\
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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93 ) } def
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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94 /len { sequence length } bind def
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
95
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
96 72 216 translate
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
97 72 6 mul len 1 add div dup scale
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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98 /Helvetica findfont 0.95 scalefont setfont
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
99
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
100 drawseq
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
101 0.5 dup translate
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
102 % draw diagonal
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
103 0.04 setlinewidth
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
104 0 len moveto len 0 lineto stroke
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
105
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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106 /min { 2 copy gt { exch } if pop } bind def
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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107
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
108 /utri{ % i j prob utri
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
109 gsave
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
110 1 min 2 div
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
111 0.85 mul 0.15 add 0.95 0.33
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
112 3 1 roll % prepare hsb color
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
113 sethsbcolor
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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114 % now produce the coordinates for lines
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
115 exch 1 sub dup len exch sub dup 4 -1 roll dup 3 1 roll dup len exch sub
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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116 moveto lineto lineto closepath fill
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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117 grestore
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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118 } bind def
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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119 /uHmotif{ % i j uHmotif
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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120 gsave
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
121 1 min 2 div
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
122 0.85 mul 0.15 add 0.95 0.99
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
123 3 1 roll % prepare hsb color
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
124 sethsbcolor
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
125 % now produce the coordinates for lines
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
126 exch 1 sub dup len exch sub dup 4 -1 roll dup 3 1 roll dup len exch sub
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
127 moveto lineto lineto closepath fill
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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128 grestore
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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129 } bind def
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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130 /lHmotif{ % i j lHmotif
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
131 gsave
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
132 1 min 2 div
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
133 0.85 mul 0.15 add 0.95 0.99
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
134 3 1 roll % prepare hsb color
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
135 sethsbcolor
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
136 % now produce the coordinates for lines
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
137 dup len exch sub dup 4 -1 roll 1 sub dup 3 1 roll dup len exch sub
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
138 moveto lineto lineto closepath fill
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
139 grestore
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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140 } bind def
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
141 /uImotif{ % i j k l uImotif
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
142 gsave
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
143 1 min 2 div
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
144 0.85 mul 0.15 add 0.95 0.99
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
145 3 1 roll % prepare hsb color
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
146 sethsbcolor
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
147 % now produce the coordinates for lines
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
148 1 sub dup 5 1 roll exch len exch sub dup 5 1 roll 3 -1 roll dup
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
149 5 1 roll exch 4 1 roll 3 1 roll exch 1 sub len exch sub dup 3 1 roll
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
150 moveto lineto lineto lineto closepath fill
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
151 grestore
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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152 } bind def
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
153 /lImotif{ % i j k l lImotif
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
154 gsave
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
155 1 min 2 div
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
156 0.85 mul 0.15 add 0.95 0.99
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
157 3 1 roll % prepare hsb color
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
158 sethsbcolor
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
159 % now produce the coordinates for lines
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
160 4 -1 roll 1 sub dup 5 1 roll exch 1 sub len exch sub dup 3 -1 roll exch
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
161 5 -1 roll len exch sub dup 6 -1 roll dup 3 1 roll 7 4 roll
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
162 moveto lineto lineto lineto closepath fill
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
163 grestore
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
164 } bind def
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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165
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
166 %data starts here
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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diff changeset
167
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
168 %start of quadruplex data
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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169
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
rnateam
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diff changeset
170 %start of Hmotif data
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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171
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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172 %start of Imotif data
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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173
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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174 %draw the grid
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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175 drawgrid
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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176
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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177 %start of base pair probability data
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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178 1 71 0.011137621 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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197 6 68 0.010641824 ubox
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198 7 19 0.003963646 ubox
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199 7 22 0.016669769 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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201 7 26 0.010803708 ubox
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202 7 45 0.003325342 ubox
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203 7 46 0.008388346 ubox
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204 7 66 0.889354167 ubox
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c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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207 8 22 0.009051039 ubox
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209 8 26 0.053349931 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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210 8 44 0.006391561 ubox
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211 8 45 0.009575801 ubox
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212 8 46 0.006511628 ubox
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213 8 48 0.044296110 ubox
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214 8 66 0.051228716 ubox
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215 9 17 0.005076838 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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216 9 20 0.044973880 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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217 9 47 0.045851242 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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218 9 67 0.006907131 ubox
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219 10 20 0.031947572 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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220 10 25 0.993218795 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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221 10 47 0.003684611 ubox
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222 10 61 0.005362683 ubox
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223 11 18 0.045881626 ubox
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224 11 19 0.032788757 ubox
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226 11 24 0.996351171 ubox
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227 11 43 0.031784396 ubox
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337 51 62 0.010700667 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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338 51 63 0.999834583 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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339 52 61 0.014860342 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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340 52 62 0.999778783 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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341 52 63 0.005533111 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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342 53 61 0.998254922 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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343 53 62 0.007658167 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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344 54 59 0.156536412 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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345 55 60 0.324268739 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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346 56 60 0.024269416 ubox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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347 1 72 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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348 2 71 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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349 3 70 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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350 4 69 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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351 5 68 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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352 6 67 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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353 7 66 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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354 10 25 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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355 11 24 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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356 12 23 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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357 13 22 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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358 27 43 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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359 28 42 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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360 29 41 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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361 30 40 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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362 31 39 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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363 49 65 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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364 50 64 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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365 51 63 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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366 52 62 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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367 53 61 0.9500000 lbox
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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368 showpage
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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369 end
c7fe6d50a6ad planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
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370 %%EOF