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comparison tablemerger.xml @ 4:bd5692103d5b draft

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author rreumerman
date Fri, 05 Apr 2013 05:00:40 -0400
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3:a808647d7312 4:bd5692103d5b
1 <tool id="tablemerger" name="SNP table merger">
2
3 <description>merges any number of SNP tables into one</description>
4
5 <command interpreter="python">tablemerger.py $output
6 #for $f in $inputs:
7 $f.in
8 #end for
9 </command>
10
11 <inputs>
12
13 <repeat name="inputs" title="Input files">
14
15 <param name="in" type="data" format="tabular" label="Input SNP table" />
16
17 </repeat>
18
19 </inputs>
20
21 <outputs>
22
23 <data name="output" format="tabular" label="${tool.name} on various SNP tables" />
24
25 </outputs>
26
27 <help>
28
29
30
31 **What it does**
32
33
34
35 This tool takes any number of tab-delimited SNP tables and merges them together.It puts SNPs at the same position on the same line and ignores bases that are the same in two strains.
36
37
38 **Example input 1**:
39
40
41
42 ======== === =======
43 Position Ref Strain1
44
45 123 A G
46
47 125 C T
48
49 ======== === =======
50
51
52
53 **Example input 2**:
54
55
56
57 ======== === =======
58 Position Ref Strain2
59
60 123 A T
61
62 124 G C
63
64 125 C T
65
66 ======== === ========
67
68
69
70
71 **Example output**:
72
73
74
75 ======== === ======= =======
76
77 Position Ref Strain1 Strain2
78
79 123 A G T
80
81 124 G C
82
83 125 C T T
84
85 ======== === ======= =======
86
87 </help>
88
89 </tool>