--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tablemerger.xml	Fri Apr 05 05:00:40 2013 -0400
@@ -0,0 +1,89 @@
+<tool id="tablemerger" name="SNP table merger">
+
+  <description>merges any number of SNP tables into one</description>
+
+  <command interpreter="python">tablemerger.py $output 
+    #for $f in $inputs:
+    $f.in
+    #end for
+  </command>
+
+  <inputs>
+
+    <repeat name="inputs" title="Input files">
+
+      <param name="in" type="data" format="tabular" label="Input SNP table" />
+
+    </repeat>
+
+  </inputs>
+
+  <outputs>
+
+    <data name="output" format="tabular" label="${tool.name} on various SNP tables" />
+
+  </outputs>
+
+  <help>
+
+
+
+**What it does**
+
+
+
+This tool takes any number of tab-delimited SNP tables and merges them together.It puts SNPs at the same position on the same line and ignores bases that are the same in two strains.
+
+
+**Example input 1**:
+
+
+
+======== === =======
+Position Ref Strain1
+
+123      A   G
+
+125      C   T
+
+======== === =======
+
+
+
+**Example input 2**:
+
+
+
+======== === =======
+Position Ref Strain2
+
+123      A   T
+
+124      G   C
+
+125      C   T
+
+======== === ========
+
+
+
+
+**Example output**:
+
+
+
+======== === ======= =======
+
+Position Ref Strain1 Strain2
+
+123      A   G       T
+
+124      G           C
+
+125      C   T       T
+
+======== === ======= =======
+
+  </help>
+
+</tool>