Mercurial > repos > ryo-tas > package_macs_1_4_2

annotate tool_dependencies.xml @ 0:b1f4fd29629a

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author ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
date Tue, 23 Dec 2014 18:12:45 +0900
parents
children 58e7660968d9
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ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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1 <?xml version="1.0"?>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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2 <tool_dependency>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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3 <package name="macs14" version="1.4.2">
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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4 <install version="1.0">
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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5 <actions>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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6 <action type="download_by_url">https://github.com/downloads/taoliu/MACS/MACS-1.4.2-1.tar.gz</action>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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7 <action type="shell_command">export PYTHONPATH=$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --prefix $INSTALL_DIR --install-lib $INSTALL_DIR/lib/python</action>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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8 <action type="set_environment">
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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9 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python</environment_variable>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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10 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python/site-packages</environment_variable>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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11 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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12 </action>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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13 </actions>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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14 </install>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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15 <readme></readme>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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16 </package>
ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
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17 </tool_dependency>