Mercurial > repos > s-kaufmann > synteny_mapper
view circos.conf @ 6:8a4190457eb7 draft
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author | s-kaufmann |
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date | Tue, 06 May 2014 04:23:25 -0400 |
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children | a6c5e5a41025 |
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<image> png = yes dir = /home/steffi/Software/galaxy-dist/database/job_working_directory/000/105/dataset_164_files file = /home/steffi/Software/galaxy-dist/database/files/000/dataset_164.dat.png radius = 750p background=white image_map_use = yes image_map_name = circosmap angle_offset = -90 auto_alpha_colors = yes auto_alpha_steps = 5 </image> karyotype = /home/steffi/Software/galaxy-dist/database/files/000/dataset_162.dat.karyotype chromosomes_units = 1000000 chromosomes_display_default = no <colors> <<include /home/steffi/Software/shed_tools/toolshed.g2.bx.psu.edu/repos/s-kaufmann/synteny_mapper/67eb55a9debe/synteny_mapper/circos-files/colors.synteny.conf>> <<include /home/steffi/Software/shed_tools/toolshed.g2.bx.psu.edu/repos/s-kaufmann/synteny_mapper/67eb55a9debe/synteny_mapper/circos-files/colors.mouse.conf>> </colors> chromosomes = hs44454;mm44454 <highlights> z = 5 <highlight> file = /home/steffi/Software/galaxy-dist/database/files/000/dataset_161.dat.gene-track r0 = 0.9r r1 = 0.99r stroke_thickness = 1 stroke_color = black </highlight> </highlights> <plots> <plot> type=text color=black file=/home/steffi/Software/galaxy-dist/database/files/000/dataset_161.dat.gene-track-labels r0=0.99r r1=1.5r label_size=9 label_font=condensed show_links=yes link_dims = 0p,90p,20p,10p,20p link_thickness=1 link_color=black padding =0p rpadding = 0p </plot> </plots> <links> <link> file = /home/steffi/Software/galaxy-dist/database/files/000/dataset_161.dat.links radius = 0.88r bezier_radius = 0r color = link_a4 stroke_thickness = 1 z = 10 ribbon = yes <rules> <rule> condition = var(size1) < 10 || var(size2) < 10 stroke_thickness = 5 flow = continue </rule> <rule> condition = 1 z = eval(scalar min(var(size1),var(size2))) flow = continue </rule> <rule> condition = 1 stroke_color = link flow = continue </rule> <rule> condition = 1 color = link_a4 </rule> </rules> </link> <link> file = /home/steffi/Software/galaxy-dist/database/files/000/dataset_161.dat.jumped radius = 0.88r bezier_radius = 0r color = link_jumped_a4 stroke_thickness = 1 z = 10 ribbon = yes <rules> <rule> condition = var(size1) < 10 || var(size2) < 10 stroke_thickness = 5 flow = continue </rule> <rule> condition = 1 z = eval(scalar min(var(size1),var(size2))) flow = continue </rule> <rule> condition = 1 stroke_color = link_jumped flow = continue </rule> <rule> condition = 1 color = link_jumped_a4 </rule> </rules> </link> </links> <<include /home/steffi/Software/shed_tools/toolshed.g2.bx.psu.edu/repos/s-kaufmann/synteny_mapper/67eb55a9debe/synteny_mapper/circos-files/synteny-region-default.conf>>