Mercurial > repos > sagun98 > micropita
changeset 2:1c5736dc85ab draft
Deleted selected files
| author | sagun98 |
|---|---|
| date | Wed, 02 Jun 2021 16:08:24 +0000 |
| parents | 3f7e66aea2ca |
| children | 8fb4630ab314 |
| files | galaxy_micropita |
| diffstat | 1 files changed, 0 insertions(+), 1756 deletions(-) [+] |
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class="js-site-search-type-field" name="type" > - <img src="https://github.githubassets.com/images/search-key-slash.svg" alt="" class="mr-2 header-search-key-slash"> - - <div class="Box position-absolute overflow-hidden d-none jump-to-suggestions js-jump-to-suggestions-container"> - -<ul class="d-none js-jump-to-suggestions-template-container"> - - -<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-suggestion" role="option"> - <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="suggestion"> - <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> - <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 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aria-label="in all of GitHub"> - All GitHub - </span> - <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> - </div> - - <div aria-hidden="true" class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> - Jump to - <span class="d-inline-block ml-1 v-align-middle">↵</span> - </div> - </a> -</li> - -</ul> - -<ul class="d-none js-jump-to-no-results-template-container"> - <li class="d-flex flex-justify-center flex-items-center f5 d-none js-jump-to-suggestion p-2"> - <span class="color-text-secondary">No suggested jump to results</span> - </li> -</ul> - -<ul id="jump-to-results" role="listbox" class="p-0 m-0 js-navigation-container jump-to-suggestions-results-container js-jump-to-suggestions-results-container"> - - -<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-scoped-search d-none" role="option"> - <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="scoped_search"> - <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> - <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path></svg> - <svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path></svg> - <svg height="16" width="16" class="octicon octicon-search flex-shrink-0 js-jump-to-octicon-search d-none" title="Search" aria-label="Search" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M11.5 7a4.499 4.499 0 11-8.998 0A4.499 4.499 0 0111.5 7zm-.82 4.74a6 6 0 111.06-1.06l3.04 3.04a.75.75 0 11-1.06 1.06l-3.04-3.04z"></path></svg> - </div> - - <img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28"> - - <div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target"> - </div> - - <div class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none js-jump-to-badge-search"> - <span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository"> - In this repository - </span> - <span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub"> - All GitHub - </span> - <span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span> - </div> - - <div aria-hidden="true" class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump"> - Jump to - <span class="d-inline-block ml-1 v-align-middle">↵</span> - </div> - </a> -</li> - - - -<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-owner-scoped-search d-none" role="option"> - <a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="owner_scoped_search"> - <div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none"> - <svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path></svg> - <svg height="16" width="16" class="octicon 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data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"notification subscription menu watch","repository_id":null,"auth_type":"LOG_IN","originating_url":"https://github.com/biobakery/galaxy_micropita","user_id":null}}" data-hydro-click-hmac="d01fea0c14fc896d0e875bbdd2f94d2397589dbca2d4ac4500dfe0b5f8aa1763" href="/login?return_to=%2Fbiobakery%2Fgalaxy_micropita"> - <svg aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-bell"> - <path d="M8 16a2 2 0 001.985-1.75c.017-.137-.097-.25-.235-.25h-3.5c-.138 0-.252.113-.235.25A2 2 0 008 16z"></path><path fill-rule="evenodd" d="M8 1.5A3.5 3.5 0 004.5 5v2.947c0 .346-.102.683-.294.97l-1.703 2.556a.018.018 0 00-.003.01l.001.006c0 .002.002.004.004.006a.017.017 0 00.006.004l.007.001h10.964l.007-.001a.016.016 0 00.006-.004.016.016 0 00.004-.006l.001-.007a.017.017 0 00-.003-.01l-1.703-2.554a1.75 1.75 0 01-.294-.97V5A3.5 3.5 0 008 1.5zM3 5a5 5 0 0110 0v2.947c0 .05.015.098.042.139l1.703 2.555A1.518 1.518 0 0113.482 13H2.518a1.518 1.518 0 01-1.263-2.36l1.703-2.554A.25.25 0 003 7.947V5z"></path> -</svg> - Notifications -</a> - </li> - - <li> - <a class="btn btn-sm btn-with-count tooltipped tooltipped-s" aria-label="You must be signed in to star a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"star button","repository_id":259785191,"auth_type":"LOG_IN","originating_url":"https://github.com/biobakery/galaxy_micropita","user_id":null}}" data-hydro-click-hmac="4deaf4487b42d9180f2c9c9188099f901045ed017c624119a37727c5062f3a7a" href="/login?return_to=%2Fbiobakery%2Fgalaxy_micropita"> - <svg aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-star v-align-text-bottom mr-1"> - <path fill-rule="evenodd" d="M8 .25a.75.75 0 01.673.418l1.882 3.815 4.21.612a.75.75 0 01.416 1.279l-3.046 2.97.719 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data-hydro-click-hmac="d7dc944fd5a8c9628bbff284db8e42da7f591e260925d228742f0e144c156bf4" href="/login?return_to=%2Fbiobakery%2Fgalaxy_micropita"> - <svg aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-repo-forked"> - <path fill-rule="evenodd" d="M5 3.25a.75.75 0 11-1.5 0 .75.75 0 011.5 0zm0 2.122a2.25 2.25 0 10-1.5 0v.878A2.25 2.25 0 005.75 8.5h1.5v2.128a2.251 2.251 0 101.5 0V8.5h1.5a2.25 2.25 0 002.25-2.25v-.878a2.25 2.25 0 10-1.5 0v.878a.75.75 0 01-.75.75h-4.5A.75.75 0 015 6.25v-.878zm3.75 7.378a.75.75 0 11-1.5 0 .75.75 0 011.5 0zm3-8.75a.75.75 0 100-1.5.75.75 0 000 1.5z"></path> -</svg> - Fork -</a> - <a href="/biobakery/galaxy_micropita/network/members" class="social-count" - aria-label="0 users forked this repository"> - 0 - </a> - </li> -</ul> - - </div> - <div class="d-block d-md-none mb-2 px-3 px-md-4 px-lg-5"> - <div class="mb-3"> - <a class="Link--secondary no-underline mr-3" 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fill-rule="evenodd" d="M5 3.25a.75.75 0 11-1.5 0 .75.75 0 011.5 0zm0 2.122a2.25 2.25 0 10-1.5 0v.878A2.25 2.25 0 005.75 8.5h1.5v2.128a2.251 2.251 0 101.5 0V8.5h1.5a2.25 2.25 0 002.25-2.25v-.878a2.25 2.25 0 10-1.5 0v.878a.75.75 0 01-.75.75h-4.5A.75.75 0 015 6.25v-.878zm3.75 7.378a.75.75 0 11-1.5 0 .75.75 0 011.5 0zm3-8.75a.75.75 0 100-1.5.75.75 0 000 1.5z"></path> -</svg> - <span class="text-bold">0</span> - forks -</a> </div> - <div class="d-flex"> - <div class="flex-1 mr-2"> - <a class="btn btn-sm btn-block tooltipped tooltipped-s" aria-label="You must be signed in to star a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"star button","repository_id":259785191,"auth_type":"LOG_IN","originating_url":"https://github.com/biobakery/galaxy_micropita","user_id":null}}" data-hydro-click-hmac="4deaf4487b42d9180f2c9c9188099f901045ed017c624119a37727c5062f3a7a" href="/login?return_to=%2Fbiobakery%2Fgalaxy_micropita"> - <svg aria-hidden="true" viewBox="0 0 16 16" version="1.1" data-view-component="true" height="16" width="16" class="octicon octicon-star v-align-text-bottom mr-1"> - <path fill-rule="evenodd" d="M8 .25a.75.75 0 01.673.418l1.882 3.815 4.21.612a.75.75 0 01.416 1.279l-3.046 2.97.719 4.192a.75.75 0 01-1.088.791L8 12.347l-3.766 1.98a.75.75 0 01-1.088-.79l.72-4.194L.818 6.374a.75.75 0 01.416-1.28l4.21-.611L7.327.668A.75.75 0 018 .25zm0 2.445L6.615 5.5a.75.75 0 01-.564.41l-3.097.45 2.24 2.184a.75.75 0 01.216.664l-.528 3.084 2.769-1.456a.75.75 0 01.698 0l2.77 1.456-.53-3.084a.75.75 0 01.216-.664l2.24-2.183-3.096-.45a.75.75 0 01-.564-.41L8 2.694v.001z"></path> -</svg> - <span data-view-component="true"> - Star -</span></a> - - </div> - <div class="flex-1"> - <a class="tooltipped tooltipped-s btn btn-sm btn-block" aria-label="You must be signed in to change notification settings" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"notification 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data-hydro-click-hmac="15743d7da1132d819302b20e08f8885359dec34a55b3b66612e961c7edd5f41a" data-ga-click="Repository, download zip, location:repo overview" data-open-app="link" href="/biobakery/galaxy_micropita/archive/refs/heads/master.zip"> - <svg class="octicon octicon-file-zip mr-3" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M3.5 1.75a.25.25 0 01.25-.25h3a.75.75 0 000 1.5h.5a.75.75 0 000-1.5h2.086a.25.25 0 01.177.073l2.914 2.914a.25.25 0 01.073.177v8.586a.25.25 0 01-.25.25h-.5a.75.75 0 000 1.5h.5A1.75 1.75 0 0014 13.25V4.664c0-.464-.184-.909-.513-1.237L10.573.513A1.75 1.75 0 009.336 0H3.75A1.75 1.75 0 002 1.75v11.5c0 .649.353 1.214.874 1.515a.75.75 0 10.752-1.298.25.25 0 01-.126-.217V1.75zM8.75 3a.75.75 0 000 1.5h.5a.75.75 0 000-1.5h-.5zM6 5.25a.75.75 0 01.75-.75h.5a.75.75 0 010 1.5h-.5A.75.75 0 016 5.25zm2 1.5A.75.75 0 018.75 6h.5a.75.75 0 010 1.5h-.5A.75.75 0 018 6.75zm-1.25.75a.75.75 0 000 1.5h.5a.75.75 0 000-1.5h-.5zM8 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data-hydro-click="{"event_type":"code_navigation.click_on_symbol","payload":{"action":"click_on_symbol","repository_id":259785191,"ref":"master","language":"Markdown","originating_url":"https://github.com/biobakery/galaxy_micropita","user_id":null}}" - data-hydro-click-hmac="f09a003019ab0cfe742a2cda57cece73c027f2f2a39a26f1200a74ad92162e68"> - <div class="Popover-message Popover-message--large Popover-message--top-left TagsearchPopover mt-1 mb-4 mx-auto Box color-shadow-large"> - <div class="TagsearchPopover-content js-tagsearch-popover-content overflow-auto" style="will-change:transform;"> - </div> - </div> -</div> - - <div data-target="readme-toc.content" class="Box-body px-5 pb-5"> - <article class="markdown-body entry-content container-lg" itemprop="text"><p>Installation instructions for micropita in a galaxy environment.</p> -<p>micropita is installed in Galaxy using the Admin tool of Galaxy.</p> -<p>In the</p> -<div class="snippet-clipboard-content position-relative" data-snippet-clipboard-copy-content="Admin tool -"><pre><code>Admin tool -</code></pre></div> -<p>select</p> -<div class="snippet-clipboard-content position-relative" data-snippet-clipboard-copy-content="Search and browse tool sheds -"><pre><code>Search and browse tool sheds -</code></pre></div> -<p>select the tool shed and enter</p> -<div class="snippet-clipboard-content position-relative" data-snippet-clipboard-copy-content="micropita -"><pre><code>micropita -</code></pre></div> -<p>select</p> -<div class="snippet-clipboard-content position-relative" data-snippet-clipboard-copy-content="preview and install -"><pre><code>preview and install -</code></pre></div> -<p>NOTE: You have to be an administrator in your Galaxy instance to install.</p> -<p>For general reference about micropita refer to:</p> -<div class="snippet-clipboard-content position-relative" data-snippet-clipboard-copy-content="https://bitbucket.org/biobakery/micropita 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