Mercurial > repos > saket-choudhary > eqtl_tools

annotate panama.xml @ 5:5417d7cb27a0

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Changing version to be 1.0
author Saket Choudhary<saketkc@gmail.com>
date Thu, 20 Jun 2013 18:27:53 +0530
parents 54dddd7b44d0
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
1 <tool id="panama1" name="panama" version="1.0.0">
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
2 <requirements>
3
54dddd7b44d0 Remove wrong package name
Saket Choudhary<saketkc@gmail.com>
parents: 1
diff changeset
3 <requirement type="package" version="0.4">panama</requirement>
1
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
4 </requirements>
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
5 <description>eQTL Analysis using PANAMA(http://ml.sheffield.ac.uk/qtl/panama/)</description>
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
6 <command interpreter="python">
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
7 panama_run.py --exp_data=$expression_data --snp_data=$snp_data --output1=$output1
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
8 </command>
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
9 <inputs>
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
10 <param name="expression_data" type="data" format="text" label="Select Expression Data" />
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
11 <param name="snp_data" type="data" format="text" label="Select SNP data" />
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
12 </inputs>
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
13 <outputs>
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
14 <data name="output1" format="text" />
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
15 </outputs>
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
16 <tests>
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
17 <test>
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
18 <param name="expression_data" value="sim_expr.csv" />
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
19 <param name="snp_data" value="sim_snps.csv" />
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
20 <output name="output1" file="PANAMA_results.csv" />
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
21 </test>
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
22 </tests>
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
23
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
24
7265ecc0f879 Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff changeset
25 </tool>