Mercurial > repos > saket-choudhary > eqtl_tools
annotate panama.xml @ 3:54dddd7b44d0
Remove wrong package name
author | Saket Choudhary<saketkc@gmail.com> |
---|---|
date | Sun, 16 Jun 2013 17:06:46 +0530 |
parents | 7265ecc0f879 |
children |
rev | line source |
---|---|
1
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
1 <tool id="panama1" name="panama" version="1.0.0"> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
2 <requirements> |
3 | 3 <requirement type="package" version="0.4">panama</requirement> |
1
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
4 </requirements> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
5 <description>eQTL Analysis using PANAMA(http://ml.sheffield.ac.uk/qtl/panama/)</description> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
6 <command interpreter="python"> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
7 panama_run.py --exp_data=$expression_data --snp_data=$snp_data --output1=$output1 |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
8 </command> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
9 <inputs> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
10 <param name="expression_data" type="data" format="text" label="Select Expression Data" /> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
11 <param name="snp_data" type="data" format="text" label="Select SNP data" /> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
12 </inputs> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
13 <outputs> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
14 <data name="output1" format="text" /> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
15 </outputs> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
16 <tests> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
17 <test> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
18 <param name="expression_data" value="sim_expr.csv" /> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
19 <param name="snp_data" value="sim_snps.csv" /> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
20 <output name="output1" file="PANAMA_results.csv" /> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
21 </test> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
22 </tests> |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
23 |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
24 |
7265ecc0f879
Moving the files to proper hiererachy levels
Saket Choudhary<saketkc@gmail.com>
parents:
diff
changeset
|
25 </tool> |