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comparison panama/panama.xml @ 0:2cb13deb38ad

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author saket-choudhary
date Sun, 16 Jun 2013 02:46:55 -0400
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1 <tool id="panama1" name="panama" version="1.0.0">
2 <requirements>
3 <requirement type="package">panama</requirement>
4 </requirements>
5 <description>eQTL Analysis using PANAMA(http://ml.sheffield.ac.uk/qtl/panama/)</description>
6 <command interpreter="python">
7 panama_run.py --exp_data=$expression_data --snp_data=$snp_data --output1=$output1
8 </command>
9 <inputs>
10 <param name="expression_data" type="data" format="text" label="Select Expression Data" />
11 <param name="snp_data" type="data" format="text" label="Select SNP data" />
12 </inputs>
13 <outputs>
14 <data name="output1" format="text" />
15 </outputs>
16 <tests>
17 <test>
18 <param name="expression_data" value="sim_expr.csv" />
19 <param name="snp_data" value="sim_snps.csv" />
20 <output name="output1" file="PANAMA_results.csv" />
21 </test>
22 </tests>
23
24
25 </tool>