Mercurial > repos > saket-choudhary > eqtl_tools

diff panama/panama.xml @ 0:2cb13deb38ad

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Uploaded first set of files
author saket-choudhary
date Sun, 16 Jun 2013 02:46:55 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/panama/panama.xml	Sun Jun 16 02:46:55 2013 -0400
@@ -0,0 +1,25 @@
+<tool id="panama1" name="panama"  version="1.0.0">
+    <requirements>
+        <requirement type="package">panama</requirement>
+    </requirements>
+    <description>eQTL Analysis using PANAMA(http://ml.sheffield.ac.uk/qtl/panama/)</description>
+    <command interpreter="python">
+        panama_run.py --exp_data=$expression_data --snp_data=$snp_data --output1=$output1
+    </command>
+    <inputs>
+        <param name="expression_data" type="data" format="text" label="Select Expression Data" />
+        <param name="snp_data" type="data" format="text" label="Select SNP data" />
+    </inputs>
+    <outputs>
+        <data name="output1" format="text" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="expression_data" value="sim_expr.csv" />
+            <param name="snp_data" value="sim_snps.csv" />
+            <output name="output1" file="PANAMA_results.csv" />
+        </test>
+    </tests>
+
+
+</tool>