Mercurial > repos > sarahinraauzeville > dos2unix

changeset 2:c2682f3f470a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded README
author sarahinraauzeville
date Tue, 12 Dec 2017 09:31:09 -0500
parents 836946d90d26
children bcc062005bb2
files README_dos2unix
diffstat 1 files changed, 29 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README_dos2unix	Tue Dec 12 09:31:09 2017 -0500
@@ -0,0 +1,29 @@
+************************************************************************************
+******        Add perl and xml wrapper files in tools/ d                      ******
+************************************************************************************
+
+
+Download files with hg clone in tools/ directory, then you have these files availables (wrappers and scripts):
+sm_dos2unix.pl  sm_dos2unix.xml
+
+
+************************************************************************************
+******        tool_conf.xml file to update                                    ******
+************************************************************************************
+
+Add a tag <tool> in your section "convert formats" (for instance) in your config/tool_conf.xml file:
+        <tool file="my_tools/sm_dos2unix/sm_dos2unix.xml" />
+
+************************************************************************************
+******        Add paths in galaxy.ini configuation file                       ******
+************************************************************************************
+
+Add a my_bin/ directory in galaxy repository with symbolic links to binaries:
+[galaxy-preprod@vm-galaxy-preprod my_bin]$ pwd
+/galaxydata/galaxy-preprod/my_bin
+lrwxrwxrwx  1 galaxy-prod wbioinfo   11  3 juin   2016 dos2unix -> dos2unix3.1
+
+
+Add paths to binaries and a section [workPath], at the end of galaxy.ini file: 
+Dans geany ../../config/galaxy.ini &
+DOS=/galaxydata/galaxy-prod/my_bin/dos2unix