Mercurial > repos > sarahinraauzeville > dos2unix

changeset 0:fc7c00da3eeb draft

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Uploaded xml
author sarahinraauzeville
date Tue, 12 Dec 2017 09:30:14 -0500
parents
children 836946d90d26
files sm_dos2unix.xml
diffstat 1 files changed, 16 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sm_dos2unix.xml	Tue Dec 12 09:30:14 2017 -0500
@@ -0,0 +1,16 @@
+<tool id="sm_dos2unix" name="Clean Windows files">
+  <description>in order to be used on cluster (unix)</description>
+  <command interpreter="perl">sm_dos2unix.pl 
+  $input
+  $output
+  </command>
+  <inputs>
+    <param format="fastq, fasta, txt, bam, sam, Csfasta, qual, bed, csv, xls, gff, gtf, pdf, vcf, xsq, bw, png, tabular" name="input" type="data" label="Input file"/>
+  </inputs>
+  <outputs>
+    <data format="fastq, fasta, txt, bam, sam, Csfasta, qual, bed, csv, xls, gff, gtf, pdf, vcf, xsq, bw, png, tabular" name="output" label="{$input.name}-cleaned" />
+  </outputs>
+  <help>
+This command (dos2unix) cleans files from Windows in order to be used with unix.
+  </help>
+</tool>