Mercurial > repos > sarahinraauzeville > rnaseq_tophat2

changeset 5:04b86e142e90 draft

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Deleted selected files
author sarahinraauzeville
date Fri, 12 Feb 2016 08:30:47 -0500
parents 03e27fba961c
children 60f0a4bd7f97
files README_tophat2_toolshed
diffstat 1 files changed, 0 insertions(+), 18 deletions(-) [+]
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--- a/README_tophat2_toolshed	Fri Feb 12 08:30:33 2016 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,18 +0,0 @@
-- Create a PATH.ini file in galaxy-dist/ repository:
-- Add these 3 lines in your PATH.ini file :
-TOPHAT2_PATH=/path/to/bin/tophat2
-FILEPATH_DEV=/path/to/database/files/workspace/
-BOWTIE2_INDEXATION_PATH=/path/to/bin/bowtie2
-
-- To know your path to tophat2 bin, you could use this command line : 
-which tophat2
-
-- Create a "workspace" directory in /database/files/  
-- chmod 777 /path/to/database/files/workspace/
-- In sm_tophat2.pl file, complete the path to PATH.ini file
-my $cfg = Config::IniFiles->new( -file => "/path/to/PATH.ini" );
-
-- In your tool_conf.xml file, add this line in your RNAseq section :
- <tool file="/path/to/sm_tophat2.xml" />  
-
-