Mercurial > repos > saskia-hiltemann > annovar

annotate tools/tool_dependencies.xml @ 5:4600be69b96f draft

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Added databases 1000g2015aug, SPIDEX, avsnp138, avsnp142, exac03
author saskia-hiltemann
date Thu, 01 Oct 2015 04:24:45 -0400
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4600be69b96f Added databases 1000g2015aug, SPIDEX, avsnp138, avsnp142, exac03
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="cgatools" version="1.7">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://sourceforge.net/projects/cgatools/files/1.7.1/cgatools-1.7.1.5-linux_binary-x86_64.tar.gz</action>
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7 <action type="shell_command"> chmod a+x bin/cgatools</action>
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8 <action type="move_file">
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9 <source>bin/cgatools</source>
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10 <destination>$INSTALL_DIR/bin</destination>
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11 </action>
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12 <action type="set_environment">
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13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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14 <environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>
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15 </action>
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16 </actions>
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17 </install>
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18 <readme>
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19 Downloads and installs the cgatools binary.
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20 </readme>
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21 </package>
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22 </tool_dependency>
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