Mercurial > repos > saskia-hiltemann > annovar

comparison tools/tool_dependencies.xml @ 5:4600be69b96f draft

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Added databases 1000g2015aug, SPIDEX, avsnp138, avsnp142, exac03
author saskia-hiltemann
date Thu, 01 Oct 2015 04:24:45 -0400
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4:e423536a0780 5:4600be69b96f
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="cgatools" version="1.7">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">http://sourceforge.net/projects/cgatools/files/1.7.1/cgatools-1.7.1.5-linux_binary-x86_64.tar.gz</action>
7 <action type="shell_command"> chmod a+x bin/cgatools</action>
8 <action type="move_file">
9 <source>bin/cgatools</source>
10 <destination>$INSTALL_DIR/bin</destination>
11 </action>
12 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
14 <environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>
15 </action>
16 </actions>
17 </install>
18 <readme>
19 Downloads and installs the cgatools binary.
20 </readme>
21 </package>
22 </tool_dependency>
23